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Aliases for CCDC61 Gene

Aliases for CCDC61 Gene

  • Coiled-Coil Domain Containing 61 2 3 5

External Ids for CCDC61 Gene

Previous GeneCards Identifiers for CCDC61 Gene

  • GC19P051191
  • GC19P046498
  • GC19P042926

Summaries for CCDC61 Gene

GeneCards Summary for CCDC61 Gene

CCDC61 (Coiled-Coil Domain Containing 61) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC61 Gene

Genomics for CCDC61 Gene

Regulatory Elements for CCDC61 Gene

Promoters for CCDC61 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CCDC61 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC61 Gene

Chromosome:
19
Start:
45,995,451 bp from pter
End:
46,021,318 bp from pter
Size:
25,868 bases
Orientation:
Plus strand

Genomic View for CCDC61 Gene

Genes around CCDC61 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC61 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC61 Gene

Proteins for CCDC61 Gene

  • Protein details for CCDC61 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y6R9-CCD61_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 61
    Protein Accession:
    Q9Y6R9
    Secondary Accessions:
    • C8CAP4
    • Q9HDB6

    Protein attributes for CCDC61 Gene

    Size:
    512 amino acids
    Molecular mass:
    57368 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAD38244.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=AAD38244.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAF98366.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC61 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC61 Gene

Proteomics data for CCDC61 Gene at MOPED

Post-translational modifications for CCDC61 Gene

  • Ubiquitination at Lys 364 and Lys 480
  • Modification sites at PhosphoSitePlus

Other Protein References for CCDC61 Gene

No data available for DME Specific Peptides for CCDC61 Gene

Domains & Families for CCDC61 Gene

Protein Domains for CCDC61 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC61 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC61: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC61 Gene

Function for CCDC61 Gene

genes like me logo Genes that share phenotypes with CCDC61: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC61 Gene

Localization for CCDC61 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC61 Gene COMPARTMENTS Subcellular localization image for CCDC61 gene
Compartment Confidence
cytoskeleton 5
nucleus 4
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC61 Gene

Pathways & Interactions for CCDC61 Gene

SuperPathways for CCDC61 Gene

No Data Available

Interacting Proteins for CCDC61 Gene

Gene Ontology (GO) - Biological Process for CCDC61 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC61 Gene

Drugs & Compounds for CCDC61 Gene

No Compound Related Data Available

Transcripts for CCDC61 Gene

mRNA/cDNA for CCDC61 Gene

(5) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC61 Gene

Coiled-coil domain containing 61:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC61 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1:
SP2:
SP3: -

Relevant External Links for CCDC61 Gene

GeneLoc Exon Structure for
CCDC61
ECgene alternative splicing isoforms for
CCDC61

Expression for CCDC61 Gene

mRNA expression in normal human tissues for CCDC61 Gene

Protein differential expression in normal tissues from HIPED for CCDC61 Gene

This gene is overexpressed in Adrenal (53.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for CCDC61 Gene



SOURCE GeneReport for Unigene cluster for CCDC61 Gene Hs.515479

genes like me logo Genes that share expression patterns with CCDC61: view

Protein tissue co-expression partners for CCDC61 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC61 Gene

Orthologs for CCDC61 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC61 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CCDC61 35
  • 89.22 (n)
  • 89.8 (a)
CCDC61 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC61 35
  • 87.61 (n)
  • 90.02 (a)
CCDC61 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc61 35
  • 84.38 (n)
  • 86.02 (a)
Ccdc61 16
Ccdc61 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CCDC61 35
  • 99.46 (n)
  • 99.46 (a)
CCDC61 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc61 35
  • 83.53 (n)
  • 84.78 (a)
oppossum
(Monodelphis domestica)
Mammalia CCDC61 36
  • 47 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC61 36
  • 44 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 74 (a)
OneToMany
-- 36
  • 42 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100486261 35
  • 51.69 (n)
  • 48.94 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc61 35
  • 50.75 (n)
  • 45.9 (a)
ccdc61 36
  • 41 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 65 (a)
OneToOne
Species with no ortholog for CCDC61:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC61 Gene

ENSEMBL:
Gene Tree for CCDC61 (if available)
TreeFam:
Gene Tree for CCDC61 (if available)

Paralogs for CCDC61 Gene

No data available for Paralogs for CCDC61 Gene

Variants for CCDC61 Gene

Sequence variations from dbSNP and Humsavar for CCDC61 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs7271 -- 46,015,424(-) ACCCC(A/C/G/T)TCTTG reference, missense
rs7895 -- 46,015,393(-) CAGCG(C/T)CTTCA reference, missense
rs746401 -- 45,995,569(-) AGAAG(C/T)CCCTT intron-variant, upstream-variant-2KB
rs749818 -- 45,993,535(+) CATAG(A/C)TACTT upstream-variant-2KB
rs892217 -- 45,995,095(+) CACAC(C/G)CGGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC61 Gene

Variant ID Type Subtype PubMed ID
nsv912175 CNV Loss 21882294
esv25420 CNV Loss 19812545
nsv912176 CNV Gain 21882294

Variation tolerance for CCDC61 Gene

Residual Variation Intolerance Score: 88.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.84; 83.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC61 Gene

HapMap Linkage Disequilibrium report
CCDC61

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC61 Gene

Disorders for CCDC61 Gene

Relevant External Links for CCDC61

Genetic Association Database (GAD)
CCDC61
Human Genome Epidemiology (HuGE) Navigator
CCDC61
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC61

No disorders were found for CCDC61 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC61 Gene

Publications for CCDC61 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 48 67
  2. Novel asymmetrically localizing components of human centrosomes identified by complementary proteomics methods. (PMID: 21399614) Jakobsen L. … Andersen J.S. (EMBO J. 2011) 3
  3. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3
  4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3
  5. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3

Products for CCDC61 Gene

Sources for CCDC61 Gene

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