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Aliases for CCDC60 Gene

Aliases for CCDC60 Gene

  • Coiled-Coil Domain Containing 60 2 3

External Ids for CCDC60 Gene

Previous GeneCards Identifiers for CCDC60 Gene

  • GC12P118238
  • GC12P119772
  • GC12P116780

Summaries for CCDC60 Gene

GeneCards Summary for CCDC60 Gene

CCDC60 (Coiled-Coil Domain Containing 60) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC60 Gene

Genomics for CCDC60 Gene

Regulatory Elements for CCDC60 Gene

Genomic Location for CCDC60 Gene

Start:
119,334,712 bp from pter
End:
119,541,047 bp from pter
Size:
206,336 bases
Orientation:
Plus strand

Genomic View for CCDC60 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC60 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC60 Gene

Proteins for CCDC60 Gene

  • Protein details for CCDC60 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IWA6-CCD60_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 60
    Protein Accession:
    Q8IWA6
    Secondary Accessions:

    Protein attributes for CCDC60 Gene

    Size:
    550 amino acids
    Molecular mass:
    63091 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC60 Gene

Proteomics data for CCDC60 Gene at MOPED

Post-translational modifications for CCDC60 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC60 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC60 Gene

Domains for CCDC60 Gene

Protein Domains for CCDC60 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC60 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC60: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC60 Gene

Function for CCDC60 Gene

Gene Ontology (GO) - Molecular Function for CCDC60 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC60: view

Phenotypes for CCDC60 Gene

genes like me logo Genes that share phenotypes with CCDC60: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC60 Gene

Localization for CCDC60 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC60 Gene COMPARTMENTS Subcellular localization image for CCDC60 gene
Compartment Confidence
nucleus 3
cytosol 2
cytoskeleton 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC60 Gene

Pathways for CCDC60 Gene

SuperPathways for CCDC60 Gene

No Data Available

Interacting Proteins for CCDC60 Gene

Selected Interacting proteins: Q8IWA6-CCD60_HUMAN for CCDC60 Gene via UniProtKB

Symbol External ID(s) Details
MTUS2

Gene Ontology (GO) - Biological Process for CCDC60 Gene

None

No data available for Pathways by source for CCDC60 Gene

Transcripts for CCDC60 Gene

mRNA/cDNA for CCDC60 Gene

Unigene Clusters for CCDC60 Gene

Coiled-coil domain containing 60:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC60

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CCDC60

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC60 Gene

No ASD Table

Relevant External Links for CCDC60 Gene

GeneLoc Exon Structure for
CCDC60
ECgene alternative splicing isoforms for
CCDC60

Expression for CCDC60 Gene

mRNA expression in normal human tissues for CCDC60 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCDC60 Gene

This gene is overexpressed in Testis (17.6) and Bladder (5.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC60 Gene

SOURCE GeneReport for Unigene cluster for CCDC60 Gene Hs.98188

genes like me logo Genes that share expressions with CCDC60: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for CCDC60 Gene

Orthologs for CCDC60 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC60 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC60 35
  • 99.52 (n)
  • 98.91 (a)
CCDC60 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC60 35
  • 84.65 (n)
  • 82.75 (a)
CCDC60 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC60 35
  • 83.9 (n)
  • 79.4 (a)
CCDC60 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc60 35
  • 77.76 (n)
  • 78.13 (a)
Ccdc60 16
Ccdc60 36
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC60 36
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc60 35
  • 78.34 (n)
  • 78.09 (a)
chicken
(Gallus gallus)
Aves CCDC60 35
  • 50.17 (n)
  • 36.85 (a)
CCDC60 36
  • 32 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC60 36
  • 37 (a)
OneToOne
Species with no ortholog for CCDC60:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC60 Gene

ENSEMBL:
Gene Tree for CCDC60 (if available)
TreeFam:
Gene Tree for CCDC60 (if available)

Paralogs for CCDC60 Gene

No data available for Paralogs for CCDC60 Gene

Variants for CCDC60 Gene

Sequence variations from dbSNP and Humsavar for CCDC60 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs120823 -- 119,463,619(+) GAAGC(A/G)CTAAG intron-variant
rs473100 -- 119,502,902(+) AGTGG(C/T)TTACA intron-variant
rs474748 -- 119,500,326(+) TTTGT(A/G)AATTT intron-variant
rs474932 -- 119,512,562(+) ATGGA(C/T)GGAGA intron-variant
rs475672 -- 119,506,032(+) cataa(A/C)attcg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC60 Gene

Variant ID Type Subtype PubMed ID
nsv832528 CNV Gain 17160897
nsv899552 CNV Loss 21882294
nsv899553 CNV Gain 21882294
nsv832529 CNV Loss 17160897
esv2127888 CNV Deletion 18987734
esv2674874 CNV Deletion 23128226
esv3817 CNV Deletion 18987735
dgv318e199 CNV Deletion 23128226
esv2746459 CNV Deletion 23290073
esv7481 CNV Loss 19470904

Relevant External Links for CCDC60 Gene

HapMap Linkage Disequilibrium report
CCDC60

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC60 Gene

Disorders for CCDC60 Gene

Relevant External Links for CCDC60

Genetic Association Database (GAD)
CCDC60
Human Genome Epidemiology (HuGE) Navigator
CCDC60
genes like me logo Genes that share disorders with CCDC60: view

No data available for UniProtKB/Swiss-Prot for CCDC60 Gene

Publications for CCDC60 Gene

  1. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PMID: 17903295) Lunetta K.L. … Murabito J.M. (BMC Med. Genet. 2007) 3 48
  2. A genome-wide association study in 574 schizophrenia trios using DNA pooling. (PMID: 18332876) Kirov G. … O'Donovan M.C. (Mol. Psychiatry 2009) 3 48
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for CCDC60 Gene

Sources for CCDC60 Gene

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