Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC47 Gene

protein-coding   GIFtS: 45
GCID: GC17M061822

Coiled-Coil Domain Containing 47

  Search for CCDC47
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 471 2
MSTP0412
Coiled-Coil Domain-Containing Protein 472

External Ids:    HGNC: 248561   Entrez Gene: 570032   Ensembl: ENSG000001085887   UniProtKB: Q96A333   

Export aliases for CCDC47 gene to outside databases

Previous GC identifers: GC17M059177 GC17M057190


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC47 Gene: 
CCDC47 (coiled-coil domain containing 47) is a protein-coding gene. GO annotations related to this gene include protein binding and calcium ion binding. An important paralog of this gene is ENSG00000125695.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NT_010783.15  NC_018928.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CCDC47 gene promoter:
         TBP   GR   Elk-1   AML1a   POU3F1   GR-beta   AREB6   GR-alpha   LyF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC47 promoter sequence
   Search SABiosciences Chromatin IP Primers for CCDC47

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC47


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q23.3   Ensembl cytogenetic band:  17q23.3   HGNC cytogenetic band: 17q23.3

CCDC47 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC47 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M061822:  view genomic region     (about GC identifiers)

Start:
61,822,610 bp from pter      End:
61,853,711 bp from pter
Size:
31,102 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CCD47_HUMAN, Q96A33 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 47 precursor  
Size: 483 amino acids; 55874 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)
Sequence caution: Sequence=AAG39292.1; Type=Frameshift; Positions=306;
Secondary accessions: B2RAS8 D3DU20 Q96D00 Q96JZ7 Q9H3E4 Q9NRG3
Alternative splicing: 2 isoforms:  Q96A33-1   Q96A33-2   

Explore the universe of human proteins at neXtProt for CCDC47: NX_Q96A33

Explore proteomics data for CCDC47 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96A33

  • CCDC47 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC47 Protein Expression
    REFSEQ proteins: NP_064583.2  
    ENSEMBL proteins: 
     ENSP00000225726   ENSP00000384888   ENSP00000463577   ENSP00000462202  

    Human Recombinant Protein Products for CCDC47: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom MassSpec 
    OriGene Custom Protein Services for CCDC47
    GenScript Custom Purified and Recombinant Proteins Services for CCDC47
    Sino Biological Recombinant Protein for CCDC47
    Sino Biological Cell Lysate for CCDC47 
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for CCDC47 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005783endoplasmic reticulum IEA--
    GO:0016021integral to membrane IEA--

    CCDC47 for ontologies           About GeneDecksing



    CCDC47 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    OriGene Antibodies for CCDC47
    OriGene Custom Antibody Services for CCDC47
    GenScript Custom Superior Antibodies Services for CCDC47
    Novus Biologicals CCDC47 Antibody
    Abcam antibodies for CCDC47
    Cloud-Clone Corp. Antibodies for CCDC47 
    ThermoFisher Antibodies for CCDC47
    LSBio Antibodies in human, mouse, rat for CCDC47 

    Assay Products for CCDC47: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Assay Services for CCDC47
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for CCDC47
    Browse Enzo Life Sciences for kits & assays
    Cloud-Clone Corp. ELISAs for CCDC47 
    Cloud-Clone Corp. CLIAs for CCDC47


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR012879 DUF1682

    Graphical View of Domain Structure for InterPro Entry Q96A33

    ProtoNet protein and cluster: Q96A33

    1 Blocks protein domain: IPB012879 Protein of unknown function DUF1682


    CCDC47 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IEA--
    GO:0005515protein binding IPI--
         
    CCDC47 for ontologies           About GeneDecksing


    Phenotypes:
         2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Ccdc47):
     cellular  mortality/aging 

    CCDC47 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Ccdc47tm1Hta for CCDC47

       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC47 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CCDC47

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC47 
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for CCDC47 

    miRNA
    Products:
        
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCDC47
    8/22 QIAGEN miScript miRNA Assays for microRNAs that regulate CCDC47 (see all 22):
    hsa-miR-3678-3p hsa-miR-520d-5p hsa-miR-137 hsa-miR-340 hsa-miR-3908 hsa-miR-3662 hsa-miR-129-3p hsa-miR-129*
    SwitchGear 3'UTR luciferase reporter plasmidCCDC47 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for CCDC47
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC47

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for CCDC47
    Sirion Biotech Customized adenovirus for overexpression of CCDC47

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene clones in human, mouse for CCDC47 (see all 5)
    OriGene ORF clones in mouse, rat for CCDC47
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: CCDC47 (NM_020198)
    Sino Biological Human cDNA Clone for CCDC47
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC47
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC47
    Sirion Biotech Customized lentivirus for stable overexpression of CCDC47 
                         Customized lentivirus expression plasmids for stable overexpression of CCDC47 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for CCDC47
    Search LifeMap BioReagents cell lines for CCDC47
    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC47


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC47

    STRING Interaction Network Preview (showing 5 interactants - click image to see 16)

    5/29 Interacting proteins for CCDC47 (Q96A331, 2, 3 ENSP000002257264) via UniProtKB, MINT, STRING, and/or I2D (see all 29)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TOM1L1O756742, 3, ENSP000004089584MINT-65105 I2D: score=5 STRING: ENSP00000408958
    IRF7Q929851, 3, ENSP000003294114EBI-720151,EBI-968267 I2D: score=1 STRING: ENSP00000329411
    TIRAPP587531, 3, ENSP000003764454EBI-720151,EBI-528644 I2D: score=1 STRING: ENSP00000376445
    TMEM173Q86WV61, 3, ENSP000003312884EBI-720151,EBI-2800345 I2D: score=1 STRING: ENSP00000331288
    PHLDA3Q9Y5J53, ENSP000003562784I2D: score=2 STRING: ENSP00000356278
    About this table

    Gene Ontology (GO): 5 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006983ER overload response IEA--
    GO:0008150biological_process ND--
    GO:0009790embryo development IEA--
    GO:0009791post-embryonic development IEA--
    GO:0055074calcium ion homeostasis IEA--

    CCDC47 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC47 (CCD47)

    Search CenterWatch for drugs/clinical trials and news about CCDC47 / CCD47

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC47 gene: 
    NM_020198.2  

    Unigene Cluster for CCDC47:

    Coiled-coil domain containing 47
    Hs.202011  [show with all ESTs]
    Unigene Representative Sequence: NM_020198
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000225726(uc002jbs.4 uc010ddx.3) ENST00000403162 ENST00000582252(uc002jbt.2)
    ENST00000582331 ENST00000584112 ENST00000580986
    miRNA
    Products:
         
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCDC47
    8/22 QIAGEN miScript miRNA Assays for microRNAs that regulate CCDC47 (see all 22):
    hsa-miR-3678-3p hsa-miR-520d-5p hsa-miR-137 hsa-miR-340 hsa-miR-3908 hsa-miR-3662 hsa-miR-129-3p hsa-miR-129*
    SwitchGear 3'UTR luciferase reporter plasmidCCDC47 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for CCDC47
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC47
    Clone
    Products:
         
    OriGene clones in human, mouse for CCDC47 (see all 5)
    OriGene ORF clones in mouse, rat for CCDC47
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: CCDC47 (NM_020198)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC47
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC47
    Sirion Biotech Customized lentivirus for stable overexpression of CCDC47 
                         Customized lentivirus expression plasmids for stable overexpression of CCDC47 
    Primer
    Products:
        
    OriGene qPCR primer pairs and template standards for CCDC47
    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC47
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CCDC47
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC47
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC47

    Additional mRNA sequence: 

    AF113221.1 AF226054.1 AK027786.1 AK027844.1 AK075387.1 AK225813.1 AK314328.1 BC001300.1 
    BC008905.2 BC013600.2 

    22 DOTS entries:

    DT.100652059  DT.99951868  DT.456416  DT.95245016  DT.100652058  DT.91941760  DT.92436934  DT.100652055 
    DT.100652056  DT.95217253  DT.92069117  DT.121007597  DT.100643301  DT.95330272  DT.121007426  DT.121007122 
    DT.121007296  DT.121007414  DT.120705145  DT.121007117  DT.121007263  DT.86996156 

    11 AceView cDNA sequences:

    AK075387 BC001300 BC008905 AK027786 BC013600 AK027844 AF113221 AF226054 
    AX810724 NM_020198 AX810707 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC47 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGCTAATT
    CCDC47 Expression
    About this image


    See CCDC47 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC47

    SOURCE GeneReport for Unigene cluster: Hs.202011
        SABiosciences Custom PCR Arrays for CCDC47
    Primer
    Products:
    OriGene qPCR primer pairs and template standards for CCDC47
    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC47
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CCDC47
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC47
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC47
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC47

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CCDC47 gene from 9/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc471 , 5 coiled-coil domain containing 471, 5 92.13(n)1
    97.93(a)1
      11 (68.89 cM)5
    671631  NM_026009.21  NP_080285.21 
     1061974085 
    chicken
    (Gallus gallus)
    Aves CCDC471 coiled-coil domain containing 47 81.84(n)
    89.81(a)
      419958  XM_418080.3  XP_418080.1 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC476
    Uncharacterized protein
    76(a)
    1 ↔ 1
    6(78524940-78547952)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.163892 Xenopus laevis transcribed sequence with moderate similarity more 74.63(n)    BX844775.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufd13e112 Danio rerio cDNA clone IMAGE3815771 78.27(n)    BC058322.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG175931 CG17593 50.46(n)
    45.18(a)
      33573  NM_134942.2  NP_608786.2 
    worm
    (Caenorhabditis elegans)
    Secernentea ccdc-471 Protein CCDC-47 50.43(n)
    39.48(a)
      175505  NM_065387.2  NP_497788.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT4G243301 hypothetical protein 43.99(n)
    32.42(a)
      828536  NM_118566.3  NP_194164.1 
    rice
    (Oryza sativa)
    Liliopsida Os05g04324001 hypothetical protein 43.07(n)
    31.05(a)
      4338884  NM_001062166.2  NP_001055631.1 


    ENSEMBL Gene Tree for CCDC47 (if available)
    TreeFam Gene Tree for CCDC47 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CCDC47 gene
    ENSG000001256952  

    CCDC47 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/628 SNPs in CCDC47 are shown (see all 628)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1386166061,2
    C--61822177(+) TTCACA/GTTAGG 1 -- int10--------
    rs80699691,2
    C,F,A,H--61822223(+) AGTTCG/TGCTGG 1 -- int126Minor allele frequency- T:0.28NA NS EA WA CSA 2371
    rs1140674361,2
    F--61822366(+) GTCCTC/TGCATT 1 -- int11Minor allele frequency- T:0.03WA 118
    rs1127316341,2
    C--61822394(+) GTCTTAACTC/
            
    TAAGA
    1 -- int11Minor allele frequency- -:0.00CSA 2
    rs666922991,2
    C--61822395(+) TCTTA-/AACTC 
            
    AGAGG
    1 -- int10--------
    rs106328761,2
    C--61822396(+) CTTAA-/CTCAA 
            
    GAGGT
    1 -- int10--------
    rs1121433041,2
    C--61822401(+) AGAGGT/AGGAAT 1 -- int11Minor allele frequency- A:0.50NA 2
    rs1905442671,2
    --61822457(+) AATGTC/TTTTAA 1 -- int10--------
    rs1807884021,2
    --61822466(+) AAAATA/GATTGA 1 -- int10--------
    rs99048101,2
    C,F,H--61822561(+) TTCCTC/TTGAGC 1 -- int111Minor allele frequency- T:0.08NS EA NA WA 1214

    HapMap Linkage Disequilibrium report for CCDC47 (61822610 - 61853711 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for CCDC47:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2266185CNV Deletion18987734
    nsv833510CNV Loss17160897

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing CCDC47
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC47

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC47 gene, integrated from 9 sources (see all 21):
    (articles sorted by number of sources associating them with CCDC47)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743)1, 2 Otsuki T....Isogai T. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    5. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    6. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    7. A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells. (PubMed id 22412018)1 Roux K.J.... Burke B. (2012)
    8. Global landscape of HIV-human protein complexes. (PubMed id 22190034)1 Jager S....Krogan N.J. (2012)
    9. Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PubMed id 21903422)1 Li S....Dorf M.E. (2011)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 57003 HGNC: 24856 AceView: GK001 Ensembl:ENSG00000108588 euGenes: HUgn57003
    ECgene: CCDC47 H-InvDB: CCDC47

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC47 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC47 gene:
    Search GeneIP for patents involving CCDC47

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Protease Activity Assays and Reagents   Browse Recombinant/Natural Proteins  
     Browse Stem Cell Products   Browse Tocris Biochemicals & Compounds  
     Browse cDNA Clones   Browse Proteome Profiler Antibody Arrays  
     OriGene Antibodies for CCDC47   OriGene RNAi products in human, mouse, rat for CCDC47  
     OriGene qPCR primer pairs and template standards for CCDC47   Browse OriGene Protein Over-expression Lysates  
     OriGene Custom Mass Spec   OriGene clones in human, mouse for CCDC47  
     OriGene qSTAR qPCR primer pairs in human, mouse for CCDC47   Browse OriGene full length recombinant human proteins expressed in human HEK293 cells  
     OriGene ORF clones in mouse, rat for CCDC47   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for CCDC47   OriGene Custom Protein Services for CCDC47  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CCDC47
     QIAGEN SeqTarget long-range PCR primers for resequencing CCDC47
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC47
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC47
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC47
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC47
     GenScript Custom Purified and Recombinant Proteins Services for CCDC47 GenScript cDNA clones with any tag delivered in your preferred vector for CCDC47
     GenScript Custom Assay Services for CCDC47 GenScript Custom Superior Antibodies Services for CCDC47
     GenScript Custom overexpressing Cell Line Services for CCDC47 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in CCDC47 promoter
     Search Chromatin IP Primers for CCDC47
     RT2 qPCR Primer Assay in human, mouse, rat CCDC47
     Search GNC Networks for CCDC47
     SABiosciences Custom PCR Arrays for CCDC47
     Search Tocris compounds for CCDC47 (CCD47)
     Proteins and Antibodies for CCDC47
     Cell Lysates for CCDC47
     cDNA Clones for CCDC47
     4000+ Proteins
     Search Sino Biological for antibodies, proteins & pathways
     Protein Production Services
     Transfection Reagents
     Protein A/G/L resins
     Isotyping reagents
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     CCDC47 antibodies
     Antibodies for CCDC47
     See all of Abcam's Antibodies, Kits and Proteins for CCDC47
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     Proteins for CCDC47
     Antibodies for CCDC47
     ELISAs for CCDC47
     CLIAs for CCDC47
     Search LifeMap BioReagents cell lines for CCDC47
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC47
     SwitchGear 3'UTR luciferase reporter plasmids for CCDC47
     SwitchGear Promoter luciferase reporter plasmids for CCDC47
     ThermoFisher Antibodies for CCDC47
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC47
     inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC47
     inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CCDC47
    Customized:
     lentivirus for stable overexpression of CCDC47
     lentivirus expression plasmids for stable overexpression of CCDC47
     adenovirus for overexpression of CCDC47
     LSBio Antibodies in human, mouse, rat for CCDC47
    Customized transgenic rodents for:
     Humanization
     Biomarker expression
     Off-target effect monitoring
     Translational medicine
     Tissue-specific gene expresssion
     Time-controlled gene expresssion
           
    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

    View Random Gene

    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      CCDC47 gene at Home site.
    hostname: 356980-web2.xennexinc.com index build: 106 solr: 1.4