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Aliases for CCDC47 Gene

Aliases for CCDC47 Gene

  • Coiled-Coil Domain Containing 47 2 3
  • Coiled-Coil Domain-Containing Protein 47 3
  • MSTP041 3
  • GK001 3

External Ids for CCDC47 Gene

Previous GeneCards Identifiers for CCDC47 Gene

  • GC17M059177
  • GC17M061822
  • GC17M057190

Summaries for CCDC47 Gene

GeneCards Summary for CCDC47 Gene

CCDC47 (Coiled-Coil Domain Containing 47) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is ENSG00000125695.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC47 Gene

Genomics for CCDC47 Gene

Regulatory Elements for CCDC47 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC47 Gene

Start:
63,745,250 bp from pter
End:
63,776,351 bp from pter
Size:
31,102 bases
Orientation:
Minus strand

Genomic View for CCDC47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC47 Gene

Proteins for CCDC47 Gene

  • Protein details for CCDC47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A33-CCD47_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 47
    Protein Accession:
    Q96A33
    Secondary Accessions:
    • B2RAS8
    • D3DU20
    • Q96D00
    • Q96JZ7
    • Q9H3E4
    • Q9NRG3

    Protein attributes for CCDC47 Gene

    Size:
    483 amino acids
    Molecular mass:
    55874 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG39292.1; Type=Frameshift; Positions=306; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC47 Gene

Proteomics data for CCDC47 Gene at MOPED

Post-translational modifications for CCDC47 Gene

Other Protein References for CCDC47 Gene

No data available for DME Specific Peptides for CCDC47 Gene

Domains for CCDC47 Gene

Protein Domains for CCDC47 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC47 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC47: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC47 Gene

Function for CCDC47 Gene

Gene Ontology (GO) - Molecular Function for CCDC47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 21903422
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with CCDC47: view

Phenotypes for CCDC47 Gene

MGI mutant phenotypes for CCDC47:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with CCDC47: view

Animal Models for CCDC47 Gene

MGI Knock Outs for CCDC47:

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for CCDC47 Gene

Localization for CCDC47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC47 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC47 Gene COMPARTMENTS Subcellular localization image for CCDC47 gene
Compartment Confidence
endoplasmic reticulum 2
cytosol 1
extracellular 1
nucleus 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CCDC47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IEA --
GO:0016020 membrane IDA 16210410
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC47: view

Pathways for CCDC47 Gene

SuperPathways for CCDC47 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001649 osteoblast differentiation IDA 16210410
GO:0006983 ER overload response IEA --
GO:0009791 post-embryonic development IEA --
GO:0055074 calcium ion homeostasis IEA --
genes like me logo Genes that share ontologies with CCDC47: view

No data available for Pathways by source for CCDC47 Gene

Transcripts for CCDC47 Gene

mRNA/cDNA for CCDC47 Gene

(10) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC47 Gene

Coiled-coil domain containing 47:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC47

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC47 Gene

No ASD Table

Relevant External Links for CCDC47 Gene

GeneLoc Exon Structure for
CCDC47
ECgene alternative splicing isoforms for
CCDC47

Expression for CCDC47 Gene

mRNA expression in normal human tissues for CCDC47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC47 Gene

SOURCE GeneReport for Unigene cluster for CCDC47 Gene Hs.202011

genes like me logo Genes that share expressions with CCDC47: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC47 Gene

Orthologs for CCDC47 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CCDC47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC47 35
  • 99.93 (n)
  • 100 (a)
CCDC47 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC47 35
  • 93.51 (n)
  • 97.93 (a)
CCDC47 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC47 35
  • 94.69 (n)
  • 98.76 (a)
CCDC47 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc47 35
  • 92.13 (n)
  • 97.93 (a)
Ccdc47 16
Ccdc47 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC47 36
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC47 36
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc47 35
  • 91.65 (n)
  • 97.93 (a)
chicken
(Gallus gallus)
Aves CCDC47 35
  • 81.84 (n)
  • 89.81 (a)
CCDC47 36
  • 90 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC47 36
  • 76 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.16389 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc47 35
  • 79.21 (n)
  • 90.32 (a)
Str.586 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.1555 35
zebrafish
(Danio rerio)
Actinopterygii ccdc47 35
  • 74.34 (n)
  • 80.86 (a)
ccdc47 36
  • 77 (a)
OneToOne
wufd13e11 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010007 35
  • 51.96 (n)
  • 46.24 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG17593 35
  • 50.95 (n)
  • 45.81 (a)
CG17593 36
  • 45 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ccdc-47 35
  • 50.36 (n)
  • 38.69 (a)
ccdc-47 36
  • 39 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G24330 35
  • 45.59 (n)
  • 34.37 (a)
rice
(Oryza sativa)
Liliopsida Os05g0432400 35
  • 44.81 (n)
  • 32.94 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1616 36
  • 47 (a)
OneToMany
Species with no ortholog for CCDC47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CCDC47 Gene

ENSEMBL:
Gene Tree for CCDC47 (if available)
TreeFam:
Gene Tree for CCDC47 (if available)

Paralogs for CCDC47 Gene

Paralogs for CCDC47 Gene

genes like me logo Genes that share paralogs with CCDC47: view

Variants for CCDC47 Gene

Sequence variations from dbSNP and Humsavar for CCDC47 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs9207 -- 63,746,539(+) TTTCA(C/T)GGTAT utr-variant-3-prime
rs14954 -- 63,746,557(+) AACAC(A/T)GAAGT utr-variant-3-prime
rs1272676 -- 63,751,512(-) TTACC(C/T)AACTA intron-variant
rs2044124 -- 63,768,065(+) AAAAC(C/T)ACCAG intron-variant
rs3744293 -- 63,764,428(-) TGTAA(A/T)ACAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC47 Gene

Variant ID Type Subtype PubMed ID
esv2266185 CNV Deletion 18987734
nsv833510 CNV Loss 17160897

Relevant External Links for CCDC47 Gene

HapMap Linkage Disequilibrium report
CCDC47
Human Gene Mutation Database (HGMD)
CCDC47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC47 Gene

Disorders for CCDC47 Gene

No disorders were found for CCDC47 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC47 Gene

Publications for CCDC47 Gene

  1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3

Products for CCDC47 Gene

Sources for CCDC47 Gene

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