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CCDC47 Gene

protein-coding   GIFtS: 49
GCID: GC17M061822

Coiled-Coil Domain Containing 47

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Coiled-Coil Domain Containing 471 2
MSTP0412
Coiled-Coil Domain-Containing Protein 472

External Ids:    HGNC: 248561   Entrez Gene: 570032   Ensembl: ENSG000001085887   UniProtKB: Q96A333   

Export aliases for CCDC47 gene to outside databases

Previous GC identifers: GC17M059177 GC17M057190


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CCDC47 Gene:
CCDC47 (coiled-coil domain containing 47) is a protein-coding gene. Diseases associated with CCDC47 include malaria. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is ENSG00000125695.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000017.11  NT_010783.16  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the CCDC47 gene promoter:
         TBP   GR   Elk-1   AML1a   POU3F1   GR-beta   AREB6   GR-alpha   LyF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC47 promoter sequence
   Search Chromatin IP Primers for CCDC47

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC47


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q23.3   Ensembl cytogenetic band:  17q23.3   HGNC cytogenetic band: 17q23.3

CCDC47 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC47 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M061822:  view genomic region     (about GC identifiers)

Start:
61,822,610 bp from pter      End:
61,853,711 bp from pter
Size:
31,102 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: CCD47_HUMAN, Q96A33 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 47 precursor  
Size: 483 amino acids; 55874 Da
Sequence caution: Sequence=AAG39292.1; Type=Frameshift; Positions=306;
Secondary accessions: B2RAS8 D3DU20 Q96D00 Q96JZ7 Q9H3E4 Q9NRG3
Alternative splicing: 2 isoforms:  Q96A33-1   Q96A33-2   

Explore the universe of human proteins at neXtProt for CCDC47: NX_Q96A33

Explore proteomics data for CCDC47 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys419
  • Glycosylation2 at Asn178
  • Modification sites at PhosphoSitePlus

  • See CCDC47 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_064583.2  
    ENSEMBL proteins: 
     ENSP00000225726   ENSP00000384888   ENSP00000463577   ENSP00000462202  

    CCDC47 Human Recombinant Protein Products:

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    Cloud-Clone Corp. ELISAs for CCDC47
    Cloud-Clone Corp. CLIAs for CCDC47


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR012879 DUF1682

    Graphical View of Domain Structure for InterPro Entry Q96A33

    ProtoNet protein and cluster: Q96A33

    1 Blocks protein domain: IPB012879 Protein of unknown function DUF1682


    CCDC47 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 3 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005509calcium ion binding IEA--
    GO:0005515protein binding IPI--
    GO:0044822poly(A) RNA binding IDA--
         
    CCDC47 for ontologies           About GeneDecksing


    Phenotypes:
         2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Ccdc47):
     cellular  mortality/aging 

    CCDC47 for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Ccdc47tm1Hta for CCDC47

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CCDC47
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CCDC47

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC47
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for CCDC47

    miRNA
    Products:
        
    miRTarBase miRNAs that target CCDC47:
    hsa-mir-93-5p (MIRT048890), hsa-mir-222-3p (MIRT046635), hsa-mir-20a-5p (MIRT050615), hsa-mir-1226-3p (MIRT036426), hsa-mir-106a-5p (MIRT048350), hsa-mir-17-5p (MIRT051015), hsa-mir-215-5p (MIRT024703), hsa-mir-196a-5p (MIRT026099), hsa-mir-106b-5p (MIRT044362), hsa-mir-500a-3p (MIRT041146), hsa-mir-192-5p (MIRT026510), hsa-mir-484 (MIRT041791)

    Block miRNA regulation of human, mouse, rat CCDC47 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate CCDC47 (see all 22):
    hsa-miR-3678-3p hsa-miR-520d-5p hsa-miR-137 hsa-miR-340 hsa-miR-3908 hsa-miR-3662 hsa-miR-129-3p hsa-miR-129*
    SwitchGear 3'UTR luciferase reporter plasmidCCDC47 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CCDC47

    Gene Editing
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    Clone
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    OriGene clones in human, mouse for CCDC47 (see all 7)
    OriGene ORF clones in mouse, rat for CCDC47
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: CCDC47 (NM_020198)
    Sino Biological Human cDNA Clone for CCDC47
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC47
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC47

    Cell Line
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    GenScript Custom overexpressing Cell Line Services for CCDC47
    Browse ESI BIO Cell Lines and PureStem Progenitors for CCDC47 
    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC47


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    CCD47_HUMAN, Q96A33: Membrane; Single-pass membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    endoplasmic reticulum2
    cytosol1
    extracellular1
    nucleus1
    peroxisome1
    plasma membrane1

    Gene Ontology (GO): 3 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005783endoplasmic reticulum IEA--
    GO:0016021integral component of membrane IEA--

    CCDC47 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCDC47
    Interactions:

        Search GeneGlobe Interaction Network for CCDC47

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for CCDC47 (Q96A331, 2, 3 ENSP000002257264) via UniProtKB, MINT, STRING, and/or I2D (see all 41)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TOM1L1O756742, 3, ENSP000004089584MINT-65105 I2D: score=5 STRING: ENSP00000408958
    IRF7Q929851, 3, ENSP000003294114EBI-720151,EBI-968267 I2D: score=1 STRING: ENSP00000329411
    TIRAPP587531, 3, ENSP000003764454EBI-720151,EBI-528644 I2D: score=1 STRING: ENSP00000376445
    TMEM173Q86WV61, 3, ENSP000003312884EBI-720151,EBI-2800345 I2D: score=1 STRING: ENSP00000331288
    PRSS16Q9NQE73, ENSP000002305824I2D: score=4 STRING: ENSP00000230582
    About this table

    Gene Ontology (GO): 5 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006983ER overload response IEA--
    GO:0008150biological_process ND--
    GO:0009790embryo development IEA--
    GO:0009791post-embryonic development IEA--
    GO:0055074calcium ion homeostasis IEA--

    CCDC47 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CCDC47 (CCD47)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for CCDC47 gene: 
    NM_020198.2  

    Unigene Cluster for CCDC47:

    Coiled-coil domain containing 47
    Hs.202011  [show with all ESTs]
    Unigene Representative Sequence: NM_020198
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000225726(uc002jbs.4 uc010ddx.3) ENST00000403162 ENST00000582252(uc002jbt.2)
    ENST00000582331 ENST00000584112 ENST00000580986
    miRNA
    Products:
         
    Block miRNA regulation of human, mouse, rat CCDC47 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate CCDC47 (see all 22):
    hsa-miR-3678-3p hsa-miR-520d-5p hsa-miR-137 hsa-miR-340 hsa-miR-3908 hsa-miR-3662 hsa-miR-129-3p hsa-miR-129*
    SwitchGear 3'UTR luciferase reporter plasmidCCDC47 3' UTR sequence
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for CCDC47
    Predesigned siRNA for gene silencing in human, mouse, rat CCDC47
    Clone
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    OriGene clones in human, mouse for CCDC47 (see all 7)
    OriGene ORF clones in mouse, rat for CCDC47
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: CCDC47 (NM_020198)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC47
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC47
    Primer
    Products:
        
    OriGene qPCR primer pairs and template standards for CCDC47
    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC47
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat CCDC47
      QuantiTect SYBR Green Assays in human, mouse, rat CCDC47
      QuantiFast Probe-based Assays in human, mouse, rat CCDC47

    Additional mRNA sequence: 

    AF113221.1 AF226054.1 AK027786.1 AK027844.1 AK075387.1 AK225813.1 AK314328.1 BC001300.1 
    BC008905.2 BC013600.2 

    22 DOTS entries:

    DT.100652059  DT.99951868  DT.456416  DT.95245016  DT.100652058  DT.91941760  DT.92436934  DT.100652055 
    DT.100652056  DT.95217253  DT.92069117  DT.121007597  DT.100643301  DT.95330272  DT.121007426  DT.121007122 
    DT.121007296  DT.121007414  DT.120705145  DT.121007117  DT.121007263  DT.86996156 

    11 AceView cDNA sequences:

    AK075387 AK027786 BC013600 BC008905 BC001300 AK027844 AX810707 NM_020198 
    AF226054 AX810724 AF113221 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CCDC47 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GCAGCTAATT
    CCDC47 Expression
    About this image


    CCDC47 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 10) fully expand
     
     Brain (Nervous System)
             Cerebral Cortex
     
     Colon (Gastrointestinal Tract)
     
     Kidney (Urinary System)
     
     Thyroid (Endocrine System)
     
     Liver (Hepatobiliary System)
    CCDC47 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CCDC47 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.202011
        Custom PCR Arrays for CCDC47
    Primer
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    QuantiFast Probe-based Assays in human, mouse, rat CCDC47
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC47

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CCDC47 gene from Selected species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc471 , 5 coiled-coil domain containing 471, 5 92.13(n)1
    97.93(a)1
      11 (68.89 cM)5
    671631  NM_026009.21  NP_080285.21 
     1061974085 
    chicken
    (Gallus gallus)
    Aves CCDC471 coiled-coil domain containing 47 81.84(n)
    89.81(a)
      419958  XM_418080.4  XP_418080.2 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC476
    coiled-coil domain containing 47
    76(a)
    1 ↔ 1
    6(78524940-78547952)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.163892 Xenopus laevis transcribed sequence with moderate similarity more 74.63(n)    BX844775.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufd13e112 Danio rerio cDNA clone IMAGE3815771 78.27(n)    BC058322.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG175931 CG17593 50.95(n)
    45.81(a)
      33573  NM_134942.3  NP_608786.2 
    worm
    (Caenorhabditis elegans)
    Secernentea ccdc-471 ccdc-47 50.36(n)
    38.69(a)
      175505  NM_065387.3  NP_497788.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT4G243301 AT4G24330 45.59(n)
    34.37(a)
      828536  NM_118566.3  NP_194164.1 
    rice
    (Oryza sativa)
    Liliopsida Os05g04324001 Os05g0432400 44.81(n)
    32.94(a)
      4338884  NM_001062166.2  NP_001055631.1 


    ENSEMBL Gene Tree for CCDC47 (if available)
    TreeFam Gene Tree for CCDC47 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CCDC47 gene
    ENSG000001256952  

    CCDC47 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CCDC47 (see all 628)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1386166061,2
    C--61822177(+) TTCACA/GTTAGG 1 -- int10--------
    rs80699691,2
    C,F,A,H--61822223(+) AGTTCG/TGCTGG 1 -- int126Minor allele frequency- T:0.28NA NS EA WA CSA 2371
    rs1140674361,2
    F--61822366(+) GTCCTC/TGCATT 1 -- int11Minor allele frequency- T:0.03WA 118
    rs1127316341,2
    C--61822394(+) GTCTTAACTC/
            
    TAAGA
    1 -- int11Minor allele frequency- -:0.00CSA 2
    rs666922991,2
    C--61822395(+) TCTTA-/AACTC 
            
    AGAGG
    1 -- int10--------
    rs106328761,2
    C--61822396(+) CTTAA-/CTCAA 
            
    GAGGT
    1 -- int10--------
    rs1121433041,2
    C--61822401(+) AGAGGT/AGGAAT 1 -- int11Minor allele frequency- A:0.50NA 2
    rs1905442671,2
    --61822457(+) AATGTC/TTTTAA 1 -- int10--------
    rs1807884021,2
    --61822466(+) AAAATA/GATTGA 1 -- int10--------
    rs99048101,2
    C,F,H--61822561(+) TTCCTC/TTGAGC 1 -- int111Minor allele frequency- T:0.08NS EA NA WA 1214

    HapMap Linkage Disequilibrium report for CCDC47 (61822610 - 61853711 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for CCDC47:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2266185CNV Deletion18987734
    nsv833510CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing CCDC47
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC47

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for CCDC47:    
    About MalaCards
    malaria


    CCDC47 for disorders           About GeneDecksing


    Export disorders for CCDC47 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CCDC47 gene, integrated from 10 sources (see all 22):
    (articles sorted by number of sources associating them with CCDC47)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743)1, 2 Otsuki T....Isogai T. (DNA Res. 2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    5. Pathway Analysis of ChIP-Seq-Based NRF1 Target Genes Suggests a Logical Hypothesis of their Involvement in the Pathogenesis of Neurodegenerative Diseases. (PubMed id 24250222)1 Satoh J....Yamamoto Y. (Gene Regul Syst Bio 2013)
    6. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    8. A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells. (PubMed id 22412018)1 Roux K.J.... Burke B. (J. Cell Biol. 2012)
    9. Global landscape of HIV-human protein complexes. (PubMed id 22190034)1 JAoger S....Krogan N.J. (Nature 2012)
    10. Mapping a dynamic innate immunity protein interaction network regulating type I interferon production. (PubMed id 21903422)1 Li S.... Dorf M.E. (Immunity 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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      Query String
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 57003 HGNC: 24856 AceView: GK001 Ensembl:ENSG00000108588 euGenes: HUgn57003
    ECgene: CCDC47 H-InvDB: CCDC47

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for CCDC47 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CCDC47 gene:
    Search GeneIP for patents involving CCDC47

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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