Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC39-AS1 Gene

Subcategory (RNA class) for CCDC39-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CCDC39-AS1 Gene

  • CCDC39 Antisense RNA 1 2 3 5
  • CCDC39 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CCDC39-AS1 Gene

Previous GeneCards Identifiers for CCDC39-AS1 Gene

  • GC00U933332
  • GC03P180400

Summaries for CCDC39-AS1 Gene

GeneCards Summary for CCDC39-AS1 Gene

CCDC39-AS1 (CCDC39 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC39-AS1 Gene

Genomics for CCDC39-AS1 Gene

Regulatory Elements for CCDC39-AS1 Gene

Enhancers for CCDC39-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G180718 1.7 VISTA 10.7 +39.3 39321 1.5 MAFF MAFK CCDC39-AS1 CCDC39 LOC647253 RN7SL229P
GH03G180708 0.4 ENCODE 11 +28.0 28044 0.2 CHD7 MAFK CCDC39-AS1 CCDC39 RN7SL229P
GH03G180706 0.4 FANTOM5 11 +26.1 26146 0.3 NR2F2 CCDC39-AS1 CCDC39 RN7SL229P
GH03G180678 0.9 ENCODE 0.7 -0.5 -487 1.3 ELF3 ARID4B SIN3A BMI1 ZNF2 ZNF48 RAD21 ZBTB40 GLIS2 ELK1 CCDC39-AS1 GC03M180608
GH03G180633 0.5 FANTOM5 0.2 -46.2 -46224 0.3 CTCF MLLT1 RAD21 GC03M180608 CCDC39-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC39-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC39-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000162638 -383 1399 ELF3 ARID4B SIN3A BMI1 ZNF2 ZNF48 RAD21 ZBTB40 ELK1 ZNF366

Genomic Location for CCDC39-AS1 Gene

180,680,084 bp from pter
180,700,449 bp from pter
20,366 bases
Plus strand

Genomic View for CCDC39-AS1 Gene

Genes around CCDC39-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC39-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC39-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CCDC39-AS1 Gene

Proteins for CCDC39-AS1 Gene

Post-translational modifications for CCDC39-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC39-AS1 Gene

Domains & Families for CCDC39-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC39-AS1 Gene

Function for CCDC39-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC39-AS1 Gene

Localization for CCDC39-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC39-AS1 Gene

Pathways & Interactions for CCDC39-AS1 Gene

SuperPathways for CCDC39-AS1 Gene

No Data Available

Interacting Proteins for CCDC39-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC39-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC39-AS1 Gene

Drugs & Compounds for CCDC39-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC39-AS1 Gene

mRNA/cDNA for CCDC39-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC39-AS1 Gene

No ASD Table

Relevant External Links for CCDC39-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC39-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC39-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC39-AS1 Gene

This gene is overexpressed in Testis (x9.0) and Ovary (x6.3).
genes like me logo Genes that share expression patterns with CCDC39-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC39-AS1 Gene

Orthologs for CCDC39-AS1 Gene

Evolution for CCDC39-AS1 Gene

Gene Tree for CCDC39-AS1 (if available)
Gene Tree for CCDC39-AS1 (if available)

No data available for Orthologs for CCDC39-AS1 Gene

Paralogs for CCDC39-AS1 Gene

No data available for Paralogs for CCDC39-AS1 Gene

Variants for CCDC39-AS1 Gene

Relevant External Links for CCDC39-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC39-AS1 Gene

Disorders for CCDC39-AS1 Gene

No disorders were found for CCDC39-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC39-AS1 Gene

Publications for CCDC39-AS1 Gene

No publications were found for CCDC39-AS1 Gene.

Products for CCDC39-AS1 Gene

Sources for CCDC39-AS1 Gene

Loading form....