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Aliases for CCDC38 Gene

Aliases for CCDC38 Gene

  • Coiled-Coil Domain Containing 38 2 3

External Ids for CCDC38 Gene

Summaries for CCDC38 Gene

GeneCards Summary for CCDC38 Gene

CCDC38 (Coiled-Coil Domain Containing 38) is a Protein Coding gene. An important paralog of this gene is CCDC37.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC38 Gene

Genomics for CCDC38 Gene

Genomic Location for CCDC38 Gene

Start:
95,867,048 bp from pter
End:
95,942,974 bp from pter
Size:
75,927 bases
Orientation:
Minus strand

Genomic View for CCDC38 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC38 Gene

Regulatory Elements for CCDC38 Gene

Proteins for CCDC38 Gene

  • Protein details for CCDC38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q502W7-CCD38_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 38
    Protein Accession:
    Q502W7
    Secondary Accessions:
    • Q8N835

    Protein attributes for CCDC38 Gene

    Size:
    563 amino acids
    Molecular mass:
    65315 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC38 Gene

Proteomics data for CCDC38 Gene at MOPED

Post-translational modifications for CCDC38 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC38 Gene

No data available for DME Specific Peptides for CCDC38 Gene

Domains for CCDC38 Gene

Protein Domains for CCDC38 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with CCDC38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC38 Gene

Function for CCDC38 Gene

Phenotypes for CCDC38 Gene

GenomeRNAi human phenotypes for CCDC38:
genes like me logo Genes that share phenotypes with CCDC38: view

miRNA for CCDC38 Gene

miRTarBase miRNAs that target CCDC38

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC38 Gene

Localization for CCDC38 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC38 Gene COMPARTMENTS Subcellular localization image for CCDC38 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for CCDC38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005813 centrosome IDA 25074808
genes like me logo Genes that share ontologies with CCDC38: view

Pathways for CCDC38 Gene

SuperPathways for CCDC38 Gene

No Data Available

Interacting Proteins for CCDC38 Gene

Gene Ontology (GO) - Biological Process for CCDC38 Gene

None

No data available for Pathways by source for CCDC38 Gene

Transcripts for CCDC38 Gene

mRNA/cDNA for CCDC38 Gene

Unigene Clusters for CCDC38 Gene

Coiled-coil domain containing 38:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC38 Gene

No ASD Table

Relevant External Links for CCDC38 Gene

GeneLoc Exon Structure for
CCDC38
ECgene alternative splicing isoforms for
CCDC38

Expression for CCDC38 Gene

mRNA expression in normal human tissues for CCDC38 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC38 Gene

This gene is overexpressed in Testis (35.5) and Liver (6.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC38 Gene

SOURCE GeneReport for Unigene cluster for CCDC38 Gene Hs.210377

genes like me logo Genes that share expressions with CCDC38: view

Orthologs for CCDC38 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC38 36
  • 98.99 (n)
  • 98.05 (a)
CCDC38 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC38 36
  • 81.84 (n)
  • 73.12 (a)
CCDC38 37
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC38 36
  • 83.18 (n)
  • 73.35 (a)
CCDC38 37
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc38 36
  • 75.91 (n)
  • 69.77 (a)
Ccdc38 16
Ccdc38 37
  • 69 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC38 37
  • 49 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 42 (a)
OneToMany
-- 37
  • 38 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ccdc38 36
  • 76.74 (n)
  • 69.77 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 26 (a)
OneToOne
Species with no ortholog for CCDC38:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC38 Gene

ENSEMBL:
Gene Tree for CCDC38 (if available)
TreeFam:
Gene Tree for CCDC38 (if available)

Paralogs for CCDC38 Gene

Paralogs for CCDC38 Gene

Selected SIMAP similar genes for CCDC38 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with CCDC38: view

Variants for CCDC38 Gene

Sequence variations from dbSNP and Humsavar for CCDC38 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs726869 -- 95,939,757(-) CATGG(G/T)GTTCA intron-variant
rs879845 -- 95,877,828(+) CAGTG(C/T)TGAGT intron-variant, downstream-variant-500B
rs879846 -- 95,877,880(+) CTCCT(G/T)GAATT intron-variant, downstream-variant-500B
rs964127 -- 95,896,955(-) ATAGA(A/T)TATTT intron-variant
rs990573 -- 95,895,219(-) AATTT(C/T)ATAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC38 Gene

Variant ID Type Subtype PubMed ID
nsv7234 OTHER Inversion 18451855
nsv455693 CNV Loss 19166990
nsv455694 CNV Loss 19166990
nsv834 CNV Loss 18451855

Relevant External Links for CCDC38 Gene

HapMap Linkage Disequilibrium report
CCDC38

Disorders for CCDC38 Gene

Relevant External Links for CCDC38

Genetic Association Database (GAD)
CCDC38
Human Genome Epidemiology (HuGE) Navigator
CCDC38
genes like me logo Genes that share disorders with CCDC38: view

No data available for UniProtKB/Swiss-Prot for CCDC38 Gene

Publications for CCDC38 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. (PMID: 21946350) Soler Artigas M. … Tobin M.D. (Nat. Genet. 2011) 3 49
  5. Proteomic analysis of mammalian sperm cells identifies new components of the centrosome. (PMID: 25074808) Firat-Karalar E.N. … Stearns T. (J. Cell Sci. 2014) 2 3

Products for CCDC38 Gene

Sources for CCDC38 Gene

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