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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC37 Gene

protein-coding   GIFtS: 46
GCID: GC03P126113

Coiled-Coil Domain Containing 37

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 371 2
Coiled-Coil Domain-Containing Protein 372

External Ids:    HGNC: 268421   Entrez Gene: 3488072   Ensembl: ENSG000001638857   UniProtKB: Q494V23   

Export aliases for CCDC37 gene to outside databases

Previous GC identifers: GC03P127597 GC03P123494


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC37 Gene: 
CCDC37 (coiled-coil domain containing 37) is a protein-coding gene. Diseases associated with CCDC37 include facial paralysis, and paralysis. An important paralog of this gene is CCDC38.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NT_005612.16  NC_018914.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CCDC37 gene promoter:
         c-Fos   AP-1   FOXF2   LCR-F1   FOXO4   ARP-1   FOXO1a   c-Jun   ZID   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC37 promoter sequence
   Search SABiosciences Chromatin IP Primers for CCDC37

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC37


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q21.3   Ensembl cytogenetic band:  3q21.3   HGNC cytogenetic band: 3q21.2

CCDC37 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC37 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P126113:  view genomic region     (about GC identifiers)

Start:
126,113,782 bp from pter      End:
126,155,399 bp from pter
Size:
41,618 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CCD37_HUMAN, Q494V2 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 37  
Size: 611 amino acids; 71117 Da
Secondary accessions: D3DNA8 Q494V1 Q494V4 Q8N838
Alternative splicing: 2 isoforms:  Q494V2-1   Q494V2-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CCDC37: NX_Q494V2

Explore proteomics data for CCDC37 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q494V2

  • CCDC37 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC37 Protein Expression
    REFSEQ proteins: NP_872434.2  
    ENSEMBL proteins: 
     ENSP00000344749   ENSP00000432494   ENSP00000423046   ENSP00000377076  

    Human Recombinant Protein Products for CCDC37: 
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    Cloud-Clone Corp. Proteins for CCDC37 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region ----

    CCDC37 for ontologies           About GeneDecksing



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    Cloud-Clone Corp. CLIAs for CCDC37


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR025252 DUF4200

    Graphical View of Domain Structure for InterPro Entry Q494V2

    ProtoNet protein and cluster: Q494V2


    CCDC37 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC37 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CCDC37

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC37 
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    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC37


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC37

    2 Interacting proteins for CCDC37 (Q494V22, 3) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NCK1P163333I2D: score=1 
    --Q9WMX22MINT-7048113
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0009405pathogenesis ----

    CCDC37 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC37 (CCD37)

    Search CenterWatch for drugs/clinical trials and news about CCDC37 / CCD37

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC37 gene: 
    NM_182628.2  

    Unigene Cluster for CCDC37:

    Coiled-coil domain containing 37
    Hs.591305  [show with all ESTs]
    Unigene Representative Sequence: NM_182628
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000508140 ENST00000352312(uc003eiu.1) ENST00000510833 ENST00000505024
    ENST00000533201 ENST00000503905 ENST00000507830 ENST00000506204 ENST00000393425(uc010hsg.1)

    miRNA
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    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate CCDC37
    SwitchGear 3'UTR luciferase reporter plasmidCCDC37 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    OriGene clones in human, mouse for CCDC37 (see all 6)
    OriGene ORF clones in mouse, rat for CCDC37
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    GenScript: all cDNA clones in your preferred vector: CCDC37 (NM_182628)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC37
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC37
    Sirion Biotech Customized lentivirus for stable overexpression of CCDC37 
                         Customized lentivirus expression plasmids for stable overexpression of CCDC37 
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC37
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC37
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC37

    Additional mRNA sequence: 

    AK097402.1 BC101366.1 BC101367.2 BC101368.1 BC101369.1 

    6 DOTS entries:

    DT.203437  DT.40263431  DT.40277761  DT.97824631  DT.91694742  DT.40295097 

    18 AceView cDNA sequences:

    AK097402 BM975600 NM_182628 AI859724 AI922395 AI138795 AW665519 AK000130 
    BM982453 AI967959 AI139623 AI910520 AI540515 AI219742 AI018336 AA995917 
    AI001797 AA913897 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC37    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9
    SP1:        -           -                             -                     
    SP2:                                                                        
    SP3:                                                                        


    ECgene alternative splicing isoforms for CCDC37

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC37 expression in normal human tissues (normalized intensities)      CCDC37 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GACAGGGAGG
    CCDC37 Expression
    About this image


    CCDC37 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Epithelium (Respiratory System)    fully expand to see all 2 entries
             bronchial epithelial cells   
     
     Pancreas (Endocrine System)
             Posterior foregut-like cells ( A scalable, suspension protocol for derivation of...

    See CCDC37 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC37

    SOURCE GeneReport for Unigene cluster: Hs.591305
        SABiosciences Custom PCR Arrays for CCDC37
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC37
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CCDC37
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC37
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC37
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC37

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC37 gene from 4/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc371 , 5 coiled-coil domain containing 371, 5 72.82(n)1
    64.89(a)1
      6 (40.16 cM)5
    2435381  NM_173775.31  NP_776136.21 
     904037365 
    chicken
    (Gallus gallus)
    Aves CCDC371 coiled-coil domain containing 37 54.43(n)
    46.52(a)
      427589  XM_425162.3  XP_425162.3 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC376
    coiled-coil domain containing 37
    49(a)
    1 ↔ 1
    2(169182843-169208953)
    zebrafish
    (Danio rerio)
    Actinopterygii ccdc371 coiled-coil domain containing 37 53.75(n)
    43.13(a)
      767793  NM_001076760.1  NP_001070228.1 


    ENSEMBL Gene Tree for CCDC37 (if available)
    TreeFam Gene Tree for CCDC37 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CCDC37 gene
    CCDC382  
    1 SIMAP similar gene for CCDC37 using alignment to 2 protein entries:     CCD37_HUMAN (see all proteins):
    CCDC38

    CCDC37 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1012 SNPs in CCDC37 are shown (see all 1012)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1455166721,2
    --126115748(+) ATTCCA/TTGGTT 1 -- int10--------
    rs773132681,2
    C,F--126115783(+) CCCCTC/TATTGT 1 -- int11Minor allele frequency- T:0.03EA 120
    rs1893450581,2
    --126115895(+) GCAAAG/TGTGTG 1 -- int10--------
    rs801644361,2
    C--126116052(+) AGAATA/GGTAAT 1 -- int10--------
    rs792558501,2
    C,F--126116179(+) GCACAC/TGCTCT 1 -- int11Minor allele frequency- T:0.13WA 118
    rs1822299091,2
    --126116187(+) TCTCTC/TGTTCT 1 -- int10--------
    rs797813721,2
    C,F--126116188(+) CTCTCG/ATTCTT 1 -- int11Minor allele frequency- A:0.12WA 118
    rs1148211111,2
    F--126116191(+) TCGTTC/ATTTTT 1 -- int11Minor allele frequency- A:0.01WA 118
    rs750090741,2
    C,F--126116192(+) CGTTCT/CTTTTT 1 -- int11Minor allele frequency- C:0.18WA 118
    rs8830521,2
    C,F,O,A,H--126116410(-) ACAGGG/TTCATA 1 -- int112Minor allele frequency- T:0.14MN NS EA NA WA 968

    HapMap Linkage Disequilibrium report for CCDC37 (126113782 - 126155399 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 6 variations for CCDC37:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv877438CNV Loss21882294
    dgv5245n71CNV Loss21882294
    nsv877432CNV Loss21882294
    nsv877439CNV Loss21882294
    nsv829717CNV Loss17160897
    nsv877436CNV Loss21882294

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing CCDC37
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    5 diseases for CCDC37:    About MalaCards
    facial paralysis    paralysis    lung squamous cell carcinoma    squamous cell carcinoma
    lung cancer

    2 diseases from the University of Copenhagen DISEASES database for CCDC37:
    Lung squamous cell carcinoma     Facial paralysis

    CCDC37 for disorders           About GeneDecksing

    Genetic Association Database (GAD): CCDC37

    Export disorders for CCDC37 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC37 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CCDC37)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. A Y2H-seq approach defines the human protein methyltransferase interactome. (PubMed id 23455924)1 Weimann M.... Stelzl U. (2013)
    4. Genome-wide analysis of DNA methylation and the gene e xpression change in lung cancer. (PubMed id 22011669)1 Kwon Y.J....Park J.H. (2012)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 348807 HGNC: 26842 AceView: FLJ40083 Ensembl:ENSG00000163885 euGenes: HUgn348807
    ECgene: CCDC37 H-InvDB: CCDC37

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC37 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC37 gene:
    Search GeneIP for patents involving CCDC37

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
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