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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

CCDC36 Gene

protein-coding GIFtS: 37
GCID: GC03P049212

coiled-coil domain containing 36

Search for CCDC36
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 36¹ ²
CT74¹ ² ³
Cancer/Testis Antigen 74² ³
FLJ25320¹
Coiled-Coil Domain-Containing Protein 36²

External Ids:	HGNC: 27945¹	Entrez Gene: 339834²	Ensembl: ENSG00000173421⁷	UniProtKB: Q8IYA8³

Export aliases for CCDC36 gene to outside databases

Previous GC identifer: GC03P049084

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000003.11 NC_018914.1 NT_022517.18

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the CCDC36 gene promoter:
GR LHX3b/Lhx3b HTF LHX3a/Lhx3a Gfi-1
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: CCDC36 promoter sequence

Search SABiosciences Chromatin IP Primers for CCDC36

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC36

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p21.31 Ensembl cytogenetic band: 3p21.31 HGNC cytogenetic band: 3p21.31

CCDC36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC36 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03P049212: view genomic region (about GC identifiers)

Start:	49,235,861 bp from pter	End:	49,295,537 bp from pter
Size:	59,677 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: CCD36_HUMAN, Q8IYA8 (See protein sequence)

Recommended Name: Coiled-coil domain-containing protein 36

Size: 594 amino acids; 66343 Da

Sequence caution: Sequence=AAH36202.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

Secondary accessions: C9JJL0 Q05DG9 Q96LP7

Alternative splicing: 3 isoforms: Q8IYA8-1 Q8IYA8-2 Q8IYA8-3 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CCDC36: NX_Q8IYA8

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q8IYA8

CCDC36 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (2 alternative transcripts):

NP_001128669.1 NP_835467.2

ENSEMBL proteins:

ENSP00000296449 ENSP00000407837 ENSP00000403700 ENSP00000391788 ENSP00000397641

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q8IYA8

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat CCDC36
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		hsa-miR-513b hsa-miR-544b
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for CCDC36

3 Interacting proteins for CCDC36 (Q8IYA8³) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ABI2	Q9NYB9³	I2D: score=1
COX5B	P10606³	I2D: score=1
HINFP	Q9BQA5³	I2D: score=1

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for CCDC36
Search CenterWatch for drugs/clinical trials and news about CCDC36 / CCD36

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for CCDC36 gene (2 alternative transcripts):

NM_001135197.1 NM_178173.3

Unigene Cluster for CCDC36:

Coiled-coil domain containing 36

Hs.631931 [show with all ESTs]

Unigene Representative Sequence: NM_178173

6 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000296449 ENST00000452691(uc010hkt.2) ENST00000366429(uc003cwl.4)

ENST00000493870 ENST00000438782(uc003cwk.2 uc011bck.1) ENST00000451634

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Additional cDNA sequence:

AK057355.1 AK303033.1 BC036202.1

4 DOTS entries:

DT.95072378 DT.95132422 DT.91651293 DT.91714960

15 AceView cDNA sequences:

BC015057 AI093420 BC036202 NM_178173 AA858032 AK058049 AL049149 CD516510

BG771713 AK057355 CD358667 BE895444 AI692170 AW821078 BU727928

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CCDC36 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: ACTCCAAACA

About this image

CCDC36 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Cartilage

Meckel's Cartilage

Cartilage

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See CCDC36 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCDC36

SOURCE GeneReport for Unigene cluster: Hs.631931

SABiosciences Custom PCR Arrays for CCDC36

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CCDC36 gene from 3/8 species (see all 8) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Ccdc36^{1 , 5}	coiled-coil domain containing 36^{1, 5}	74.11(n)¹ 57.82(a)¹		9 (59.32 cM)⁵ 434438¹ NM_001135198.1¹ NP_001128670.1¹ 108403642⁵
chicken (Gallus gallus)	Aves	CCDC36⁶	Uncharacterized protein	47(a)	1 ↔ 1	12(11787552-11797627)
lizard (Anolis carolinensis)	Reptilia	CCDC36⁶	--	55(a)	1 ↔ 1	GL343723.1(186159-196595)

ENSEMBL Gene Tree for CCDC36 (if available)
TreeFam Gene Tree for CCDC36 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs183478353^1,2		--	49233954(+)	`TCTGTC/TGCCCA`	1	--	us2k¹		0	--	--	--	--
rs185530527^1,2		--	49233959(+)	`CGCCCA/TGGCTG`	1	--	us2k¹		0	--	--	--	--
rs202107261^1,2		--	49234096(+)	`TTTTT-/ATGG ATTGA`	1	--	us2k¹		0	--	--	--	--
rs189991647^1,2		--	49234112(+)	`TGATTG/TATTTT`	1	--	us2k¹		0	--	--	--	--
rs36095141^1,2	C,	--	49234113(+)	`ATTGA-/TTTTTT`	1	--	us2k¹		0	--	--	--	--
rs182453880^1,2		--	49234134(+)	`AGTCTC/TGCTCT`	1	--	us2k¹		0	--	--	--	--
rs186772725^1,2		--	49234399(+)	`CGCCAA/GGCCAC`	1	--	us2k¹		0	--	--	--	--
rs192678706^1,2		--	49234455(+)	`GTTGCC/TCAGGC`	1	--	us2k¹		0	--	--	--	--
rs184075326^1,2		--	49234818(+)	`CAAACA/TCCTGG`	1	--	us2k¹		0	--	--	--	--
rs188861753^1,2		--	49234839(+)	`TCCTCC/TCACCT`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for CCDC36 (49235861 - 49295537 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CCDC36: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for CCDC36 gene integrated from 9 sources:
(articles sorted by number of sources associating them with CCDC36)

Utopia: connect your pdf to the dynamic
world of online information

The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)² Muzny D.M....Gibbs R.A. (2006)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)² Ota T.... Sugano S. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 339834	HGNC: 27945	AceView: LOC339834	Ensembl:ENSG00000173421	euGenes: HUgn339834
ECgene: CCDC36	H-InvDB: CCDC36

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CCDC36	Pharmacogenomics, SNPs, Pathways

Intellectual Property for CCDC36 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for CCDC36 gene:
Search GeneIP for patents involving CCDC36

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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About This Section


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CCDC36 Gene

coiled-coil domain containing 36

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for CCDC36 gene

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Expression
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CCDC36 Gene

coiled-coil domain containing 36

Aliasesfor CCDC36 gene

Summariesfor CCDC36 gene

Genomic Viewsfor CCDC36 gene

Proteinsfor CCDC36 gene

Protein Domains /Familiesfor CCDC36 gene

Functionfor CCDC36 gene

Pathways & Interactionsfor CCDC36 gene

Drugs & Compoundsfor CCDC36 gene

Transcriptsfor CCDC36 gene

Expression for CCDC36 gene

Orthologsfor CCDC36 gene

Paralogsfor CCDC36 gene

Genomic Variantsfor CCDC36 gene

Disorders / Diseasesfor CCDC36 gene

Publicationsfor CCDC36 gene

External Searches for CCDC36 gene

Genome Databases showing CCDC36 gene

Other Databases showing CCDC36 gene

Specialized Databases showing CCDC36 gene

Intellectual Propertyfor CCDC36 gene

Productsfor CCDC36 gene

View Random Gene

Aliases
for CCDC36 gene

Summaries
for CCDC36 gene

Genomic Views
for CCDC36 gene

Proteins
for CCDC36 gene

Protein Domains /
Families
for CCDC36 gene

Function
for CCDC36 gene

Pathways & Interactions
for CCDC36 gene

Drugs & Compounds
for CCDC36 gene

Transcripts
for CCDC36 gene

Expression
for CCDC36 gene

Orthologs
for CCDC36 gene

Paralogs
for CCDC36 gene

Genomic Variants
for CCDC36 gene

Disorders / Diseases
for CCDC36 gene

Publications
for CCDC36 gene

Intellectual Property
for CCDC36 gene

Products
for CCDC36 gene