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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC36 Gene

protein-coding   GIFtS: 39
GCID: GC03P049212

Coiled-Coil Domain Containing 36

  Search for CCDC36
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 361 2
Cancer/Testis Antigen 741 2 3
CT742 3
Coiled-Coil Domain-Containing Protein 362

External Ids:    HGNC: 279451   Entrez Gene: 3398342   Ensembl: ENSG000001734217   UniProtKB: Q8IYA83   

Export aliases for CCDC36 gene to outside databases

Previous GC identifer: GC03P049084


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC36 Gene: 
CCDC36 (coiled-coil domain containing 36) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NT_022517.18  NC_018914.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CCDC36 gene promoter:
         GR   LHX3b/Lhx3b   HTF   LHX3a/Lhx3a   Gfi-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC36 promoter sequence
   Search SABiosciences Chromatin IP Primers for CCDC36

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p21.31   Ensembl cytogenetic band:  3p21.31   HGNC cytogenetic band: 3p21.31

CCDC36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC36 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P049212:  view genomic region     (about GC identifiers)

Start:
49,235,861 bp from pter      End:
49,295,537 bp from pter
Size:
59,677 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CCD36_HUMAN, Q8IYA8 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 36  
Size: 594 amino acids; 66343 Da
Sequence caution: Sequence=AAH36202.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: C9JJL0 Q05DG9 Q96LP7
Alternative splicing: 3 isoforms:  Q8IYA8-1   Q8IYA8-2   Q8IYA8-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CCDC36: NX_Q8IYA8

Explore proteomics data for CCDC36 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8IYA8

  • CCDC36 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC36 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001128669.1  NP_835467.2  

    ENSEMBL proteins: 
     ENSP00000296449   ENSP00000407837   ENSP00000403700   ENSP00000391788   ENSP00000397641  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q8IYA8


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC36 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC36

    3 Interacting proteins for CCDC36 (Q8IYA83) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ABI2Q9NYB93I2D: score=1 
    COX5BP106063I2D: score=1 
    HINFPQ9BQA53I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC36 (CCD36)

    Search CenterWatch for drugs/clinical trials and news about CCDC36 / CCD36

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC36 gene (2 alternative transcripts): 
    NM_001135197.1  NM_178173.3  

    Unigene Cluster for CCDC36:

    Coiled-coil domain containing 36
    Hs.631931  [show with all ESTs]
    Unigene Representative Sequence: NM_178173
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000296449 ENST00000452691(uc010hkt.2) ENST00000366429(uc003cwl.4)
    ENST00000493870 ENST00000438782(uc003cwk.2 uc011bck.1) ENST00000451634

    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate CCDC36:
    hsa-miR-513b hsa-miR-544b
    SwitchGear 3'UTR luciferase reporter plasmidCCDC36 3' UTR sequence
    Inhib. RNA
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC36

    Additional mRNA sequence: 

    AK057355.1 AK303033.1 BC036202.1 

    4 DOTS entries:

    DT.95072378  DT.95132422  DT.91651293  DT.91714960 

    15 AceView cDNA sequences:

    AK058049 AI093420 NM_178173 AA858032 BC015057 BC036202 CD358667 AL049149 
    CD516510 BG771713 AK057355 BE895444 AI692170 AW821078 BU727928 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC36 expression in normal human tissues (normalized intensities)      CCDC36 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ACTCCAAACA
    CCDC36 Expression
    About this image


    CCDC36 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/3 selected tissues (see all 3) fully expand
     
     Cartilage (Muscoskeletal System)
             Meckel's Cartilage
     
     Lung (Respiratory System)
     
     Testis (Reproductive System)

    See CCDC36 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC36

    SOURCE GeneReport for Unigene cluster: Hs.631931
        SABiosciences Custom PCR Arrays for CCDC36
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC36

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC36 gene from 3/8 species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc361 , 5 coiled-coil domain containing 361, 5 74.11(n)1
    57.82(a)1
      9 (59.32 cM)5
    4344381  NM_001135198.11  NP_001128670.11 
     1084036425 
    chicken
    (Gallus gallus)
    Aves CCDC366
    Uncharacterized protein
    47(a)
    1 ↔ 1
    12(11494200-11511030)
    lizard
    (Anolis carolinensis)
    Reptilia CCDC366
    Uncharacterized protein
    52(a)
    1 ↔ 1
    GL343723.1(180346-206679)


    ENSEMBL Gene Tree for CCDC36 (if available)
    TreeFam Gene Tree for CCDC36 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1025 SNPs in CCDC36 are shown (see all 1025)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1834783531,2
    --49233954(+) TCTGTC/TGCCCA 1 -- us2k10--------
    rs1855305271,2
    --49233959(+) CGCCCA/TGGCTG 1 -- us2k10--------
    rs2021072611,2
    --49234096(+) TTTTT-/ATGG  
            
    ATTGA
    1 -- us2k10--------
    rs1899916471,2
    --49234112(+) TGATTG/TATTTT 1 -- us2k10--------
    rs1824538801,2
    --49234134(+) AGTCTC/TGCTCT 1 -- us2k10--------
    rs1867727251,2
    --49234399(+) CGCCAA/GGCCAC 1 -- us2k10--------
    rs1926787061,2
    --49234455(+) GTTGCC/TCAGGC 1 -- us2k10--------
    rs1840753261,2
    --49234818(+) CAAACA/TCCTGG 1 -- us2k10--------
    rs1888617531,2
    --49234839(+) TCCTCC/TCACCT 1 -- us2k10--------
    rs2000097841,2
    C--49235326(+) AAAAAA/GAAGAA 2 -- us2k10--------

    HapMap Linkage Disequilibrium report for CCDC36 (49235861 - 49295537 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for CCDC36:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2675398CNV Deletion23128226
    nsv834686CNV Loss17160897
    nsv876764CNV Loss21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC36 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CCDC36)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 339834 HGNC: 27945 AceView: LOC339834 Ensembl:ENSG00000173421 euGenes: HUgn339834
    ECgene: CCDC36 H-InvDB: CCDC36

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC36 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC36 gene:
    Search GeneIP for patents involving CCDC36

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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     SwitchGear 3'UTR luciferase reporter plasmids for CCDC36
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     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC36
     inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC36
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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