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CCDC36 Gene

protein-coding   GIFtS: 39
GCID: GC03P049235

Coiled-Coil Domain Containing 36

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Coiled-Coil Domain Containing 361 2
Cancer/Testis Antigen 741 2 3
CT742 3
Coiled-Coil Domain-Containing Protein 362

External Ids:    HGNC: 279451   Entrez Gene: 3398342   Ensembl: ENSG000001734217   UniProtKB: Q8IYA83   

Export aliases for CCDC36 gene to outside databases

Previous GC identifers: GC03P049212 GC03P049084


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CCDC36 Gene:
CCDC36 (coiled-coil domain containing 36) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000003.11  NT_022517.19  NC_018914.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the CCDC36 gene promoter:
         GR   LHX3b/Lhx3b   HTF   LHX3a/Lhx3a   Gfi-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC36 promoter sequence
   Search Chromatin IP Primers for CCDC36

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC36


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p21.31   Ensembl cytogenetic band:  3p21.31   HGNC cytogenetic band: 3p21.31

CCDC36 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC36 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P049235:  view genomic region     (about GC identifiers)

Start:
49,235,861 bp from pter      End:
49,295,537 bp from pter
Size:
59,677 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CCD36_HUMAN, Q8IYA8 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 36  
Size: 594 amino acids; 66343 Da
Sequence caution: Sequence=AAH36202.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: C9JJL0 Q05DG9 Q96LP7
Alternative splicing: 3 isoforms:  Q8IYA8-1   Q8IYA8-2   Q8IYA8-3   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CCDC36: NX_Q8IYA8

Explore proteomics data for CCDC36 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CCDC36 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001128669.1  NP_835467.2  

    ENSEMBL proteins: 
     ENSP00000296449   ENSP00000407837   ENSP00000403700   ENSP00000391788   ENSP00000397641  

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    Search eBioscience for ELISAs for CCDC36 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: Q8IYA8


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CCDC36
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    SwitchGear 3'UTR luciferase reporter plasmidCCDC36 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    peroxisome1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCDC36
    Interactions:

        Search GeneGlobe Interaction Network for CCDC36

    3 Interacting proteins for CCDC36 (Q8IYA83) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ABI2Q9NYB93I2D: score=1 
    COX5BP106063I2D: score=1 
    HINFPQ9BQA53I2D: score=1 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CCDC36 (CCD36)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CCDC36 gene (2 alternative transcripts): 
    NM_001135197.1  NM_178173.3  

    Unigene Cluster for CCDC36:

    Coiled-coil domain containing 36
    Hs.631931  [show with all ESTs]
    Unigene Representative Sequence: NM_178173
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000296449 ENST00000452691(uc010hkt.2) ENST00000366429(uc003cwl.4)
    ENST00000493870 ENST00000438782(uc003cwk.2 uc011bck.1) ENST00000451634

    miRNA
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    2 qRT-PCR Assays for microRNAs that regulate CCDC36:
    hsa-miR-513b hsa-miR-544b
    SwitchGear 3'UTR luciferase reporter plasmidCCDC36 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat CCDC36

    Additional mRNA sequence: 

    AK057355.1 AK303033.1 BC036202.1 

    4 DOTS entries:

    DT.95072378  DT.95132422  DT.91651293  DT.91714960 

    15 AceView cDNA sequences:

    BC015057 BC036202 AI093420 NM_178173 AA858032 AK058049 BG771713 CD516510 
    CD358667 AK057355 AL049149 BE895444 AW821078 AI692170 BU727928 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CCDC36 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ACTCCAAACA
    CCDC36 Expression
    About this image


    CCDC36 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Cartilage (Muscoskeletal System)
             Meckel's Cartilage
     
     Lung (Respiratory System)
     
     Testis (Reproductive System)
    CCDC36 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CCDC36 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.631931
        Custom PCR Arrays for CCDC36
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC36

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC36 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc361 , 5 coiled-coil domain containing 361, 5 74.11(n)1
    57.82(a)1
      9 (59.32 cM)5
    4344381  NM_001135198.11  NP_001128670.11 
     1084036425 
    chicken
    (Gallus gallus)
    Aves CCDC366
    coiled-coil domain containing 36
    47(a)
    1 ↔ 1
    12(11494200-11511030)
    lizard
    (Anolis carolinensis)
    Reptilia CCDC366
    coiled-coil domain containing 36
    53(a)
    1 ↔ 1
    GL343723.1(180346-206679)
    zebrafish
    (Danio rerio)
    Actinopterygii CCDC366
    coiled-coil domain containing 36
    29(a)
    1 ↔ 1
    6(40645675-40647912) ENSDARG00000097704


    ENSEMBL Gene Tree for CCDC36 (if available)
    TreeFam Gene Tree for CCDC36 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CCDC36 (see all 1025)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1834783531,2
    --49233954(+) TCTGTC/TGCCCA 1 -- us2k10--------
    rs1855305271,2
    --49233959(+) CGCCCA/TGGCTG 1 -- us2k10--------
    rs2021072611,2
    --49234096(+) TTTTT-/ATGG  
            
    ATTGA
    1 -- us2k10--------
    rs1899916471,2
    --49234112(+) TGATTG/TATTTT 1 -- us2k10--------
    rs1824538801,2
    --49234134(+) AGTCTC/TGCTCT 1 -- us2k10--------
    rs1867727251,2
    --49234399(+) CGCCAA/GGCCAC 1 -- us2k10--------
    rs1926787061,2
    --49234455(+) GTTGCC/TCAGGC 1 -- us2k10--------
    rs1840753261,2
    --49234818(+) CAAACA/TCCTGG 1 -- us2k10--------
    rs1888617531,2
    --49234839(+) TCCTCC/TCACCT 1 -- us2k10--------
    rs2000097841,2
    C--49235326(+) AAAAAA/GAAGAA 2 -- us2k10--------

    HapMap Linkage Disequilibrium report for CCDC36 (49235861 - 49295537 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for CCDC36:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2675398CNV Deletion23128226
    nsv834686CNV Loss17160897
    nsv876764CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC36

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CCDC36 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with CCDC36)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997)2 Muzny D.M....Gibbs R.A. (Nature 2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 339834 HGNC: 27945 AceView: LOC339834 Ensembl:ENSG00000173421 euGenes: HUgn339834
    ECgene: CCDC36 H-InvDB: CCDC36

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CCDC36 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CCDC36 gene:
    Search GeneIP for patents involving CCDC36

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     SwitchGear 3'UTR luciferase reporter plasmids for CCDC36
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     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC36
     inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CCDC36
     inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for CCDC36
     LSBio Antibodies in human, mouse, rat for CCDC36
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     Search Addgene for plasmids for CCDC36
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