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Aliases for CCDC30 Gene

Aliases for CCDC30 Gene

  • Coiled-Coil Domain Containing 30 2 3
  • Prefoldin Subunit 6-Like Protein 3 4
  • PFDN6L 3 4
  • Coiled-Coil Domain-Containing Protein 30 3
  • Prefoldin 6-Like 2
  • PFD6L 3

External Ids for CCDC30 Gene

Summaries for CCDC30 Gene

GeneCards Summary for CCDC30 Gene

CCDC30 (Coiled-Coil Domain Containing 30) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC30 Gene

Genomics for CCDC30 Gene

Genomic Location for CCDC30 Gene

Start:
42,463,330 bp from pter
End:
42,654,664 bp from pter
Size:
191,335 bases
Orientation:
Plus strand

Genomic View for CCDC30 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC30 Gene

No data available for Regulatory Elements for CCDC30 Gene

Proteins for CCDC30 Gene

  • Protein details for CCDC30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VVM6-CCD30_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 30
    Protein Accession:
    Q5VVM6
    Secondary Accessions:
    • Q14F06
    • Q5VVM5

    Protein attributes for CCDC30 Gene

    Size:
    783 amino acids
    Molecular mass:
    91333 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC30 Gene

Proteomics data for CCDC30 Gene at MOPED

Post-translational modifications for CCDC30 Gene

No Post-translational modifications

Other Protein References for CCDC30 Gene

No data available for DME Specific Peptides for CCDC30 Gene

Domains for CCDC30 Gene

Protein Domains for CCDC30 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC30 Gene

Graphical View of Domain Structure for InterPro Entry

Q5VVM6

UniProtKB/Swiss-Prot:

CCD30_HUMAN
Family:
  • Belongs to the prefoldin subunit beta family.:
    • Q5VVM6
genes like me logo Genes that share domains with CCDC30: view

No data available for Gene Families for CCDC30 Gene

Function for CCDC30 Gene

Phenotypes for CCDC30 Gene

GenomeRNAi human phenotypes for CCDC30:
genes like me logo Genes that share phenotypes with CCDC30: view

miRNA for CCDC30 Gene

miRTarBase miRNAs that target CCDC30

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC30 Gene

Localization for CCDC30 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC30 Gene COMPARTMENTS Subcellular localization image for CCDC30 gene
Compartment Confidence
nucleus 3
cytosol 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for CCDC30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with CCDC30: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCDC30 Gene

Pathways for CCDC30 Gene

SuperPathways for CCDC30 Gene

No Data Available

Interacting Proteins for CCDC30 Gene

Gene Ontology (GO) - Biological Process for CCDC30 Gene

None

No data available for Pathways by source for CCDC30 Gene

Transcripts for CCDC30 Gene

mRNA/cDNA for CCDC30 Gene

(7) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(14) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC30 Gene

Coiled-coil domain containing 30:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC30 Gene

No ASD Table

Relevant External Links for CCDC30 Gene

GeneLoc Exon Structure for
CCDC30
ECgene alternative splicing isoforms for
CCDC30

Expression for CCDC30 Gene

mRNA expression in normal human tissues for CCDC30 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC30 Gene

SOURCE GeneReport for Unigene cluster for CCDC30 Gene Hs.729640

mRNA Expression by UniProt/SwissProt for CCDC30 Gene

Q5VVM6-CCD30_HUMAN
Tissue specificity: Expressed in brain, kidney, pancreas, placenta, liver, thymus and prostate.
genes like me logo Genes that share expressions with CCDC30: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for CCDC30 Gene

Orthologs for CCDC30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC30 35
  • 99.49 (n)
  • 98.98 (a)
CCDC30 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC30 35
  • 82.33 (n)
  • 69.28 (a)
CCDC30 36
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC30 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc30 16
Ccdc30 36
  • 54 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC30 36
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC30 36
  • 28 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC30 35
  • 56.42 (n)
  • 39.97 (a)
CCDC30 36
  • 30 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CCDC30 36
  • 16 (a)
OneToOne
Species with no ortholog for CCDC30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC30 Gene

ENSEMBL:
Gene Tree for CCDC30 (if available)
TreeFam:
Gene Tree for CCDC30 (if available)

Paralogs for CCDC30 Gene

Selected SIMAP similar genes for CCDC30 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CCDC30: view

No data available for Paralogs for CCDC30 Gene

Variants for CCDC30 Gene

Sequence variations from dbSNP and Humsavar for CCDC30 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs988783 -- 42,652,510(-) TTTTT(A/C)AAATT intron-variant
rs1016544 -- 42,580,086(+) TTCCC(C/T)TTCTT intron-variant
rs1016545 -- 42,581,045(-) CTGGG(A/C)AACAT intron-variant
rs1079495 -- 42,624,922(-) GAGAA(C/G)GAAAT intron-variant
rs1324336 -- 42,586,515(+) GCTCA(A/G)GTTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC30 Gene

Variant ID Type Subtype PubMed ID
nsv870704 CNV Gain 21882294
esv2480910 CNV Insertion 19546169
esv1025473 CNV Insertion 17803354
esv2747541 CNV Deletion 23290073
nsv829682 CNV Loss 17160897
nsv822453 CNV Loss 20364138
esv2520511 CNV Deletion 19546169

Relevant External Links for CCDC30 Gene

HapMap Linkage Disequilibrium report
CCDC30
Human Gene Mutation Database (HGMD)
CCDC30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC30 Gene

Disorders for CCDC30 Gene

No disorders were found for CCDC30 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC30 Gene

Publications for CCDC30 Gene

  1. Cloning and characterization of a novel human prefoldin and SPEC domain protein gene (PFD6L) from the fetal brain. (PMID: 16710767) Zhang J. … Mao Y. (Biochem. Genet. 2006) 2 3 4
  2. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. (PMID: 23376485) Prunotto M. … Moll S. (J Proteomics 2013) 3
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for CCDC30 Gene

Sources for CCDC30 Gene

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