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Aliases for CCDC27 Gene

Aliases for CCDC27 Gene

  • Coiled-Coil Domain Containing 27 2 3

External Ids for CCDC27 Gene

Summaries for CCDC27 Gene

GeneCards Summary for CCDC27 Gene

CCDC27 (Coiled-Coil Domain Containing 27) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC27 Gene

Genomics for CCDC27 Gene

Genomic Location for CCDC27 Gene

Start:
3,752,398 bp from pter
End:
3,771,645 bp from pter
Size:
19,248 bases
Orientation:
Plus strand

Genomic View for CCDC27 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC27 Gene

Regulatory Elements for CCDC27 Gene

Proteins for CCDC27 Gene

  • Protein details for CCDC27 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2M243-CCD27_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 27
    Protein Accession:
    Q2M243
    Secondary Accessions:
    • Q5TBV3
    • Q96M50

    Protein attributes for CCDC27 Gene

    Size:
    656 amino acids
    Molecular mass:
    75354 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC27 Gene

Proteomics data for CCDC27 Gene at MOPED

Post-translational modifications for CCDC27 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC27 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC27 Gene

Domains for CCDC27 Gene

Protein Domains for CCDC27 Gene

ProtoNet:
genes like me logo Genes that share domains with CCDC27: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC27 Gene

Function for CCDC27 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC27 Gene

Localization for CCDC27 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC27 Gene COMPARTMENTS Subcellular localization image for CCDC27 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for CCDC27 Gene

Pathways for CCDC27 Gene

SuperPathways for CCDC27 Gene

No Data Available

Interacting Proteins for CCDC27 Gene

Gene Ontology (GO) - Biological Process for CCDC27 Gene

None

No data available for Pathways by source for CCDC27 Gene

Transcripts for CCDC27 Gene

mRNA/cDNA for CCDC27 Gene

(5) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC27 Gene

Coiled-coil domain containing 27:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC27 Gene

No ASD Table

Relevant External Links for CCDC27 Gene

GeneLoc Exon Structure for
CCDC27
ECgene alternative splicing isoforms for
CCDC27

Expression for CCDC27 Gene

mRNA expression in normal human tissues for CCDC27 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC27 Gene

This gene is overexpressed in Testis (49.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC27 Gene

SOURCE GeneReport for Unigene cluster for CCDC27 Gene Hs.348700

genes like me logo Genes that share expressions with CCDC27: view

Orthologs for CCDC27 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC27 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC27 36
  • 94.39 (n)
  • 91.5 (a)
CCDC27 37
  • 94 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC27 36
  • 74.48 (n)
  • 62.9 (a)
CCDC27 37
  • 58 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC27 36
  • 71.84 (n)
  • 62.06 (a)
CCDC27 37
  • 54 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc27 36
  • 73.75 (n)
  • 65.64 (a)
Ccdc27 16
Ccdc27 37
  • 50 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC27 37
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC27 37
  • 53 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc27 36
  • 67.07 (n)
  • 54.55 (a)
chicken
(Gallus gallus)
Aves CCDC27 37
  • 34 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC27 37
  • 31 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 24 (a)
OneToOne
Species with no ortholog for CCDC27:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC27 Gene

ENSEMBL:
Gene Tree for CCDC27 (if available)
TreeFam:
Gene Tree for CCDC27 (if available)

Paralogs for CCDC27 Gene

No data available for Paralogs for CCDC27 Gene

Variants for CCDC27 Gene

Sequence variations from dbSNP and Humsavar for CCDC27 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs4648404 -- 3,756,667(+) TCATC(A/C/G)AAGAC intron-variant
rs2275839 -- 3,767,350(-) CTTCC(A/T)CCTCT missense, reference
rs2275838 -- 3,767,524(-) TACCT(C/T)GGTGG intron-variant
rs2275837 -- 3,769,754(-) TCATT(C/T)GCCTT intron-variant
rs1775812 -- 3,754,233(+) CATGT(C/T)CCACT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CCDC27 Gene

Variant ID Type Subtype PubMed ID
dgv96n71 CNV Loss 21882294
nsv470687 CNV Loss 18288195
dgv99n71 CNV Loss 21882294
nsv871942 CNV Loss 21882294
nsv830314 CNV Gain+Loss 17160897
nsv460061 CNV Loss 19166990
nsv870977 CNV Loss 21882294
nsv830425 CNV Gain 17160897
nsv871323 CNV Loss 21882294
esv2659590 CNV Deletion 23128226
dgv114n71 CNV Loss 21882294

Relevant External Links for CCDC27 Gene

HapMap Linkage Disequilibrium report
CCDC27

Disorders for CCDC27 Gene

Relevant External Links for CCDC27

Genetic Association Database (GAD)
CCDC27
Human Genome Epidemiology (HuGE) Navigator
CCDC27
genes like me logo Genes that share disorders with CCDC27: view

No data available for UniProtKB/Swiss-Prot for CCDC27 Gene

Publications for CCDC27 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  2. High resolution linkage and linkage disequilibrium analyses of chromosome 1p36 SNPs identify new positional candidate genes for low bone mineral density. (PMID: 18597038) Zhang H. … Devoto M. (Osteoporos Int 2009) 3 49
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for CCDC27 Gene

  • antibodies-online proteins for CCDC27
  • antibodies-online antibodies for CCDC27
  • antibodies-online kits for CCDC27

Sources for CCDC27 Gene

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