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Aliases for CCDC25 Gene

Aliases for CCDC25 Gene

  • Coiled-Coil Domain Containing 25 2 3

External Ids for CCDC25 Gene

Summaries for CCDC25 Gene

GeneCards Summary for CCDC25 Gene

CCDC25 (Coiled-Coil Domain Containing 25) is a Protein Coding gene.

Gene Wiki entry for CCDC25 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC25 Gene

Genomics for CCDC25 Gene

Genomic Location for CCDC25 Gene

Start:
27,733,311 bp from pter
End:
27,772,653 bp from pter
Size:
39,343 bases
Orientation:
Minus strand

Genomic View for CCDC25 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC25 Gene

Regulatory Elements for CCDC25 Gene

Proteins for CCDC25 Gene

  • Protein details for CCDC25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86WR0-CCD25_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 25
    Protein Accession:
    Q86WR0
    Secondary Accessions:
    • Q0P663
    • Q96SI2
    • Q9NV98

    Protein attributes for CCDC25 Gene

    Size:
    208 amino acids
    Molecular mass:
    24479 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA91857.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC25 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC25 Gene

Proteomics data for CCDC25 Gene at MOPED

Post-translational modifications for CCDC25 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC25 Gene

Domains for CCDC25 Gene

Protein Domains for CCDC25 Gene

InterPro:
Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q86WR0

UniProtKB/Swiss-Prot:

CCD25_HUMAN
Family:
  • Belongs to the CCDC25 family.:
    • Q86WR0
genes like me logo Genes that share domains with CCDC25: view

No data available for Gene Families for CCDC25 Gene

Function for CCDC25 Gene

Gene Ontology (GO) - Molecular Function for CCDC25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC25: view

Phenotypes for CCDC25 Gene

GenomeRNAi human phenotypes for CCDC25:
genes like me logo Genes that share phenotypes with CCDC25: view

miRNA for CCDC25 Gene

miRTarBase miRNAs that target CCDC25

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC25 Gene

Localization for CCDC25 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC25 Gene COMPARTMENTS Subcellular localization image for CCDC25 gene
Compartment Confidence
cytosol 2
nucleus 2
golgi apparatus 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for CCDC25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with CCDC25: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCDC25 Gene

Pathways for CCDC25 Gene

SuperPathways for CCDC25 Gene

No Data Available

Interacting Proteins for CCDC25 Gene

Gene Ontology (GO) - Biological Process for CCDC25 Gene

None

No data available for Pathways by source for CCDC25 Gene

Transcripts for CCDC25 Gene

Unigene Clusters for CCDC25 Gene

Coiled-coil domain containing 25:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC25 Gene

ExUns: 1 ^ 2a · 2b · 2c · 2d · 2e ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c · 11d · 11e ^ 12 ^ 13a · 13b · 13c · 13d
SP1: - - - - -
SP2: - - - - - -
SP3: - - -
SP4: - - -
SP5: - - - - - - - - - -
SP6: - - -
SP7: - - - - - - - - - - -
SP8: - - - - - -
SP9: - - - - -
SP10: - -
SP11: - - - - - - -
SP12: - - - - - - -
SP13:

Relevant External Links for CCDC25 Gene

GeneLoc Exon Structure for
CCDC25
ECgene alternative splicing isoforms for
CCDC25

Expression for CCDC25 Gene

mRNA expression in normal human tissues for CCDC25 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC25 Gene

SOURCE GeneReport for Unigene cluster for CCDC25 Gene Hs.445512

genes like me logo Genes that share expressions with CCDC25: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC25 Gene

Orthologs for CCDC25 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CCDC25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC25 35
  • 100 (n)
  • 100 (a)
CCDC25 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC25 35
  • 91.83 (n)
  • 97.12 (a)
CCDC25 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC25 35
  • 93.27 (n)
  • 98.08 (a)
CCDC25 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc25 35
  • 91.99 (n)
  • 95.67 (a)
Ccdc25 16
Ccdc25 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC25 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 92 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ccdc25 35
  • 91.35 (n)
  • 95.19 (a)
chicken
(Gallus gallus)
Aves CCDC25 35
  • 82.93 (n)
  • 89.86 (a)
CCDC25 36
  • 82 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC25 36
  • 88 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia 2o545-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc25 35
  • 77.99 (n)
  • 85.92 (a)
Str.2958 35
zebrafish
(Danio rerio)
Actinopterygii ccdc25 35
  • 76.33 (n)
  • 80.19 (a)
ccdc25 36
  • 79 (a)
OneToOne
zgc64173 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP003621 35
  • 61.51 (n)
  • 61.35 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4593 35
  • 58.94 (n)
  • 57 (a)
CG4593 36
  • 56 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea CELE_Y54G11A.2 35
  • 57 (n)
  • 55.56 (a)
F43C1.7 36
  • 49 (a)
OneToMany
Y54G11A.2 36
  • 54 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes JLP2 36
  • 36 (a)
OneToOne
JLP2 38
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.6664 35
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G11500 35
  • 64.81 (n)
  • 62.12 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.728 35
rice
(Oryza sativa)
Liliopsida Os01g0750500 35
  • 60.44 (n)
  • 60.61 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU06750 35
  • 55.44 (n)
  • 48.24 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.11963 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6097 36
  • 65 (a)
OneToOne
Species with no ortholog for CCDC25:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CCDC25 Gene

ENSEMBL:
Gene Tree for CCDC25 (if available)
TreeFam:
Gene Tree for CCDC25 (if available)

Paralogs for CCDC25 Gene

Pseudogenes.org Pseudogenes for CCDC25 Gene

genes like me logo Genes that share paralogs with CCDC25: view

No data available for Paralogs for CCDC25 Gene

Variants for CCDC25 Gene

Sequence variations from dbSNP and Humsavar for CCDC25 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs1832 -- 27,757,379(-) ATTGT(A/G)ACCCA intron-variant
rs7109 -- 27,733,647(-) ATTTT(A/G)AAGCA utr-variant-3-prime
rs7465 -- 27,735,311(-) ATGAC(C/T)TCCTG utr-variant-3-prime
rs8445 -- 27,733,744(+) CACGC(C/G)TCAAT utr-variant-3-prime
rs9797 -- 27,734,332(-) AGTCA(C/T)TTTGC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CCDC25 Gene

Variant ID Type Subtype PubMed ID
nsv890699 CNV Gain 21882294
nsv397387 CNV Loss 16902084
nsv507451 CNV Insertion 20534489
nsv528584 CNV Gain 19592680

Relevant External Links for CCDC25 Gene

HapMap Linkage Disequilibrium report
CCDC25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC25 Gene

Disorders for CCDC25 Gene

Relevant External Links for CCDC25

Genetic Association Database (GAD)
CCDC25
Human Genome Epidemiology (HuGE) Navigator
CCDC25
genes like me logo Genes that share disorders with CCDC25: view

No data available for UniProtKB/Swiss-Prot for CCDC25 Gene

Publications for CCDC25 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4

Products for CCDC25 Gene

Sources for CCDC25 Gene

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