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Aliases for CCDC24 Gene

Aliases for CCDC24 Gene

  • Coiled-Coil Domain Containing 24 2 3 5

External Ids for CCDC24 Gene

Previous GeneCards Identifiers for CCDC24 Gene

  • GC01P044127
  • GC01P044229
  • GC01P044457
  • GC01P042572

Summaries for CCDC24 Gene

GeneCards Summary for CCDC24 Gene

CCDC24 (Coiled-Coil Domain Containing 24) is a Protein Coding gene.

Additional gene information for CCDC24 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC24 Gene

Genomics for CCDC24 Gene

Regulatory Elements for CCDC24 Gene

Enhancers for CCDC24 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H043990 1.3 ENCODE dbSUPER 28.3 +0.5 453 2 ATF1 MLX ARID4B SIN3A YY1 ETS1 SLC30A9 GLIS2 ELK1 KLF7 CCDC24 SLC6A9 ARTN ENSG00000230615
GH01H043945 1.4 ENCODE dbSUPER 17.7 -44.3 -44321 2 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 DMAP1 SZT2 ATP6V0B CCDC24 ARTN LOC101929609 HYI RNF220 LOC101929592 IPO13
GH01H043928 1.4 Ensembl ENCODE dbSUPER 17.2 -61.3 -61263 2 PKNOX1 ZNF2 RAD21 ZEB1 GLIS2 EGR1 ZSCAN5C SCRT2 ZNF143 RCOR1 ATP6V0B ARTN CCDC24 ST3GAL3 GC01M043857
GH01H044212 1.2 ENCODE 19.4 +222.1 222124 2 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 SP3 NFYC SZT2 DMAP1 KDM4A-AS1 HYI ARTN LOC101929609 PTCH2 MED8 CCDC24 HECTD3
GH01H043932 1.2 ENCODE dbSUPER 19.1 -56.7 -56697 4 HDGF ARNT ARID4B DMAP1 GLI4 ZNF2 ZNF121 GLIS2 ZNF143 FOS CCDC24 ARTN ATP6V0B ST3GAL3 GC01M043936
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC24 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC24 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005685 541 1001 ATF1 MLX ARID4B SIN3A YY1 ETS1 SLC30A9 GLIS2 ELK1 KLF7

Genomic Location for CCDC24 Gene

Chromosome:
1
Start:
43,991,359 bp from pter
End:
43,996,528 bp from pter
Size:
5,170 bases
Orientation:
Plus strand

Genomic View for CCDC24 Gene

Genes around CCDC24 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC24 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC24 Gene

Proteins for CCDC24 Gene

  • Protein details for CCDC24 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N4L8-CCD24_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 24
    Protein Accession:
    Q8N4L8
    Secondary Accessions:
    • Q6RWT2

    Protein attributes for CCDC24 Gene

    Size:
    307 amino acids
    Molecular mass:
    34322 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC24 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC24 Gene

Post-translational modifications for CCDC24 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC24 Gene

Domains & Families for CCDC24 Gene

Gene Families for CCDC24 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC24 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC24 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC24: view

No data available for UniProtKB/Swiss-Prot for CCDC24 Gene

Function for CCDC24 Gene

Gene Ontology (GO) - Molecular Function for CCDC24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC24: view
genes like me logo Genes that share phenotypes with CCDC24: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC24
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC24 Gene

Localization for CCDC24 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC24 gene
Compartment Confidence
cytosol 4
plasma membrane 3
nucleus 3
extracellular 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (4)
  • Plasma membrane (4)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC24 Gene

Pathways & Interactions for CCDC24 Gene

SuperPathways for CCDC24 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC24 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC24 Gene

Drugs & Compounds for CCDC24 Gene

No Compound Related Data Available

Transcripts for CCDC24 Gene

Unigene Clusters for CCDC24 Gene

Coiled-coil domain containing 24:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC24
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC24 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c · 11d
SP1: - - - - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - - - - - - - - - - -
SP5: - - - - - - - - -
SP6: - - - - - - - -
SP7: - - -
SP8:
SP9:
SP10: - - -
SP11: - - - - - -
SP12: - - - - - - -

Relevant External Links for CCDC24 Gene

GeneLoc Exon Structure for
CCDC24
ECgene alternative splicing isoforms for
CCDC24

Expression for CCDC24 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC24 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC24 Gene

This gene is overexpressed in Pituitary (x4.1).

Protein differential expression in normal tissues from HIPED for CCDC24 Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC24 Gene



Protein tissue co-expression partners for CCDC24 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCDC24 Gene:

CCDC24

SOURCE GeneReport for Unigene cluster for CCDC24 Gene:

Hs.632394
genes like me logo Genes that share expression patterns with CCDC24: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC24 Gene

Orthologs for CCDC24 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC24 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC24 33 34
  • 83.28 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc24 33
  • 79.53 (n)
dog
(Canis familiaris)
Mammalia CCDC24 33
  • 77.86 (n)
mouse
(Mus musculus)
Mammalia Ccdc24 34
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC24 34
  • 50 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC24 34
  • 45 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC24 34
  • 30 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc24 33
  • 54.02 (n)
zebrafish
(Danio rerio)
Actinopterygii ccdc24 33 34
  • 47.07 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 25 (a)
OneToOne
Species where no ortholog for CCDC24 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC24 Gene

ENSEMBL:
Gene Tree for CCDC24 (if available)
TreeFam:
Gene Tree for CCDC24 (if available)

Paralogs for CCDC24 Gene

No data available for Paralogs for CCDC24 Gene

Variants for CCDC24 Gene

Sequence variations from dbSNP and Humsavar for CCDC24 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000535126 -- 43,995,182(+) TGGGC(C/G)CTCCC intron-variant
rs1000661808 -- 43,989,698(+) GCTGG(C/T)TAGAA intron-variant, upstream-variant-2KB
rs1000913421 -- 43,992,898(+) GGGAG(A/T)TGAAA intron-variant
rs1001245835 -- 43,992,963(+) GTTCC(C/T)CTGGC intron-variant
rs1001475089 -- 43,994,563(+) AGCCT(C/G)CCGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC24 Gene

Variant ID Type Subtype PubMed ID
nsv546142 CNV loss 21841781
nsv732 CNV insertion 18451855

Variation tolerance for CCDC24 Gene

Residual Variation Intolerance Score: 69.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.50; 55.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC24 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC24

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC24 Gene

Disorders for CCDC24 Gene

Relevant External Links for CCDC24

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC24

No disorders were found for CCDC24 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC24 Gene

Publications for CCDC24 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  5. Disrupted in Schizophrenia 1 Interactome: evidence for the close connectivity of risk genes and a potential synaptic basis for schizophrenia. (PMID: 17043677) Camargo LM … Brandon NJ (Molecular psychiatry 2007) 3 60

Products for CCDC24 Gene

Sources for CCDC24 Gene

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