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Aliases for CCDC197 Gene

Aliases for CCDC197 Gene

  • Coiled-Coil Domain Containing 197 2 3 5
  • Long Intergenic Non-Protein Coding RNA 521 2 3
  • Putative Uncharacterized Protein Encoded By LINC00521 3
  • Chromosome 14 Open Reading Frame 48 2
  • LINC00521 3
  • C14_5713 3
  • C14orf48 3

External Ids for CCDC197 Gene

Previous HGNC Symbols for CCDC197 Gene

  • LINC00521
  • C14orf48

Summaries for CCDC197 Gene

GeneCards Summary for CCDC197 Gene

CCDC197 (Coiled-Coil Domain Containing 197) is a Protein Coding gene.

Additional gene information for CCDC197 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC197 Gene

Genomics for CCDC197 Gene

Regulatory Elements for CCDC197 Gene

Enhancers for CCDC197 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H093953 2 FANTOM5 Ensembl ENCODE dbSUPER 12 -27.2 -27225 13.2 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 BTBD7 SERPINA1 CCDC197 DDX24 UBR7 IFI27L2 IFI27 RPSAP4 FAM181A-AS1 ASB2
GH14H094025 1.1 ENCODE 16.1 +40.8 40791 4.1 PKNOX1 FOXA2 ARID4B SIN3A ZNF2 ZBTB7B ZNF207 ZNF548 FOS SP3 BTBD7 DDX24 CCDC197 ASB2 IFI27L2 IFI27L1 IFI27 OTUB2 GC14M094051 GC14M094050
GH14H094020 1.1 Ensembl ENCODE 11.2 +35.0 34965 2.7 SOX13 SAP130 MLX ARID4B CEBPG DMAP1 ZIC2 RARA ZFHX2 RERE IFI27L1 CCDC197 ASB2 DDX24 SERPINA2 OTUB2 GC14M094051 GC14M094050
GH14H093902 0.9 ENCODE 10.7 -84.4 -84387 0.5 ELF3 FOXA2 MLX DNMT3B RARA CREM HMG20B PPARG TGIF2 NFIL3 ASB2 CCDC197 ENSG00000279593 FAM181A
GH14H093994 1.2 Ensembl ENCODE dbSUPER 8 +7.9 7930 1.2 SCRT1 PKNOX1 MAX USF2 ELF1 ZNF217 ZFHX2 JUND POLR2A ZNF341 CCDC197 OTUB2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC197 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC197 Gene

Genomic Locations for CCDC197 Gene
chr14:93,987,225-94,011,695
(GRCh38/hg38)
Size:
24,471 bases
Orientation:
Plus strand
chr14:94,463,616-94,478,041
(GRCh37/hg19)

Genomic View for CCDC197 Gene

Genes around CCDC197 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC197 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC197 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC197 Gene

Proteins for CCDC197 Gene

  • Protein details for CCDC197 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTQ9
    Recommended name:
    Coiled-coil domain-containing 197
    Protein Accession:
    A0A1B0GTQ9

    Protein attributes for CCDC197 Gene

    Size:
    90 amino acids
    Molecular mass:
    10096 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC197 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUF5
    Recommended name:
    Chromosome 14 open reading frame 48, isoform CRA_b
    Protein Accession:
    A0A1B0GUF5

    Protein attributes for CCDC197 Gene

    Size:
    272 amino acids
    Molecular mass:
    31886 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC197 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVF2
    Recommended name:
    Coiled-coil domain-containing 197
    Protein Accession:
    A0A1B0GVF2

    Protein attributes for CCDC197 Gene

    Size:
    143 amino acids
    Molecular mass:
    16081 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC197 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1W2PPK9
    Recommended name:
    Coiled-coil domain-containing 197
    Protein Accession:
    A0A1W2PPK9

    Protein attributes for CCDC197 Gene

    Size:
    222 amino acids
    Molecular mass:
    25903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC197 Gene

Post-translational modifications for CCDC197 Gene

No Post-translational modifications

Other Protein References for CCDC197 Gene

No data available for DME Specific Peptides for CCDC197 Gene

Domains & Families for CCDC197 Gene

Protein Domains for CCDC197 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC197: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC197 Gene

Function for CCDC197 Gene

Phenotypes From GWAS Catalog for CCDC197 Gene

Gene Ontology (GO) - Molecular Function for CCDC197 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC197: view

Phenotypes for CCDC197 Gene

genes like me logo Genes that share phenotypes with CCDC197: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC197 Gene

Localization for CCDC197 Gene

Gene Ontology (GO) - Cellular Components for CCDC197 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC197: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CCDC197 Gene

Pathways & Interactions for CCDC197 Gene

SuperPathways for CCDC197 Gene

No Data Available

Interacting Proteins for CCDC197 Gene

Gene Ontology (GO) - Biological Process for CCDC197 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC197 Gene

Drugs & Compounds for CCDC197 Gene

No Compound Related Data Available

Transcripts for CCDC197 Gene

mRNA/cDNA for CCDC197 Gene

(2) REFSEQ mRNAs :
(8) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC197 Gene

No ASD Table

Relevant External Links for CCDC197 Gene

GeneLoc Exon Structure for
CCDC197
ECgene alternative splicing isoforms for
CCDC197

Expression for CCDC197 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC197 Gene

Orthologs for CCDC197 Gene

Evolution for CCDC197 Gene

ENSEMBL:
Gene Tree for CCDC197 (if available)
TreeFam:
Gene Tree for CCDC197 (if available)

No data available for Orthologs for CCDC197 Gene

Paralogs for CCDC197 Gene

No data available for Paralogs for CCDC197 Gene

Variants for CCDC197 Gene

Sequence variations from dbSNP and Humsavar for CCDC197 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000086751 -- 94,008,862(+) ACCTG(C/T)CTGCC intron-variant, nc-transcript-variant
rs1000266733 -- 94,001,841(+) GCGTG(A/G)CATCA intron-variant, nc-transcript-variant
rs1000461381 -- 94,002,344(+) AGTAC(A/G)GTGGA intron-variant
rs1000605362 -- 94,000,585(+) GGTGG(C/T)GAGCT intron-variant
rs1000980448 -- 94,007,672(+) CCTAG(G/T)CTCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC197 Gene

Variant ID Type Subtype PubMed ID
nsv565620 CNV loss 21841781
nsv565617 CNV loss 21841781
nsv565594 CNV gain 21841781
nsv1405 CNV insertion 18451855
nsv1052048 CNV gain 25217958

Relevant External Links for CCDC197 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC197

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC197 Gene

Disorders for CCDC197 Gene

Relevant External Links for CCDC197

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC197
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC197

No disorders were found for CCDC197 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC197 Gene

Publications for CCDC197 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  2. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual JF … Vidal M (Nature 2005) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  4. Sequence organization and matrix attachment regions of the human serine protease inhibitor gene cluster at 14q32.1. (PMID: 15014966) Namciu SJ … Fournier RE (Mammalian genome : official journal of the International Mammalian Genome Society 2004) 3 60
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 60

Products for CCDC197 Gene

Sources for CCDC197 Gene

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