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Aliases for CCDC196 Gene

Aliases for CCDC196 Gene

  • Coiled-Coil Domain Containing 196 2 3 5
  • Long Intergenic Non-Protein Coding RNA 238 2 3
  • Chromosome 14 Open Reading Frame 53 2
  • Non-Protein Coding RNA 238 2
  • NCRNA00238 3
  • LINC00238 3
  • C14orf53 3

External Ids for CCDC196 Gene

Previous HGNC Symbols for CCDC196 Gene

  • C14orf53
  • NCRNA00238
  • LINC00238

Summaries for CCDC196 Gene

GeneCards Summary for CCDC196 Gene

CCDC196 (Coiled-Coil Domain Containing 196) is a Protein Coding gene.

Additional gene information for CCDC196 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC196 Gene

Genomics for CCDC196 Gene

Regulatory Elements for CCDC196 Gene

Enhancers for CCDC196 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H066395 0.5 ENCODE 0.4 -16.2 -16217 0 CTCF SMC3 ELF1 RUNX3 RAD21 GPHN CCDC196 GC14P066230
GH14H066379 0.5 ENCODE 0.3 -32.4 -32447 0 JUND ATF3 HNF4A ATP6V1D CCDC196 GC14P066230
GH14H066359 0.7 ENCODE 0.2 -52.1 -52087 0 CTCF ZNF654 ZNF362 NFIB ZNF384 RAD21 POLR2A ZNF143 SMC3 RUNX3 CCDC196 GC14P066230
GH14H066495 0.7 ENCODE 0.2 +84.0 83974 0 CTCF TAF1 ARID4B RAD21 YY1 ZNF316 SMC3 ZNF143 MAZ ZNF654 GPHN CCDC196
GH14H066483 0.7 ENCODE 0.2 +71.9 71854 0 FOXA2 NFIA HLF CEBPB MAX REST RAD21 FOXA1 NR2F2 GABPA ATP6V1D GPHN CCDC196
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC196 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC196 Gene

Chromosome:
14
Start:
66,411,704 bp from pter
End:
66,498,677 bp from pter
Size:
86,974 bases
Orientation:
Plus strand

Genomic View for CCDC196 Gene

Genes around CCDC196 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC196 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC196 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC196 Gene

Proteins for CCDC196 Gene

  • Protein details for CCDC196 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTP3
    Recommended name:
    Coiled-coil domain-containing 196
    Protein Accession:
    A0A1B0GTP3

    Protein attributes for CCDC196 Gene

    Size:
    162 amino acids
    Molecular mass:
    18866 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC196 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTZ2
    Recommended name:
    Coiled-coil domain-containing 196
    Protein Accession:
    A0A1B0GTZ2

    Protein attributes for CCDC196 Gene

    Size:
    297 amino acids
    Molecular mass:
    34479 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC196 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GV15
    Recommended name:
    Coiled-coil domain-containing 196
    Protein Accession:
    A0A1B0GV15

    Protein attributes for CCDC196 Gene

    Size:
    193 amino acids
    Molecular mass:
    22171 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC196 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVV6
    Recommended name:
    Coiled-coil domain-containing 196
    Protein Accession:
    A0A1B0GVV6

    Protein attributes for CCDC196 Gene

    Size:
    86 amino acids
    Molecular mass:
    10299 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC196 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GW51
    Recommended name:
    Coiled-coil domain-containing 196
    Protein Accession:
    A0A1B0GW51

    Protein attributes for CCDC196 Gene

    Size:
    165 amino acids
    Molecular mass:
    19002 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC196 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GWI1
    Recommended name:
    Coiled-coil domain-containing 196
    Protein Accession:
    A0A1B0GWI1

    Protein attributes for CCDC196 Gene

    Size:
    215 amino acids
    Molecular mass:
    25304 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC196 Gene

Post-translational modifications for CCDC196 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC196 Gene

Domains & Families for CCDC196 Gene

Protein Domains for CCDC196 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC196: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC196 Gene

Function for CCDC196 Gene

Phenotypes for CCDC196 Gene

genes like me logo Genes that share phenotypes with CCDC196: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC196
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC196 Gene

Localization for CCDC196 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC196 Gene

Pathways & Interactions for CCDC196 Gene

SuperPathways for CCDC196 Gene

No Data Available

Interacting Proteins for CCDC196 Gene

Gene Ontology (GO) - Biological Process for CCDC196 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC196 Gene

Drugs & Compounds for CCDC196 Gene

No Compound Related Data Available

Transcripts for CCDC196 Gene

mRNA/cDNA for CCDC196 Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC196
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC196 Gene

No ASD Table

Relevant External Links for CCDC196 Gene

GeneLoc Exon Structure for
CCDC196
ECgene alternative splicing isoforms for
CCDC196

Expression for CCDC196 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC196 Gene:

CCDC196
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC196 Gene

Orthologs for CCDC196 Gene

Evolution for CCDC196 Gene

ENSEMBL:
Gene Tree for CCDC196 (if available)
TreeFam:
Gene Tree for CCDC196 (if available)

No data available for Orthologs for CCDC196 Gene

Paralogs for CCDC196 Gene

No data available for Paralogs for CCDC196 Gene

Variants for CCDC196 Gene

Sequence variations from dbSNP and Humsavar for CCDC196 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000119037 -- 66,487,827(+) TTATA(A/T)AGGGG intron-variant
rs1000156180 -- 66,488,480(+) TAAAA(A/C)CTTTT intron-variant
rs1000364766 -- 66,491,945(+) AGACT(A/G)AGCAT intron-variant
rs1000648865 -- 66,493,823(+) AGCAG(C/T)ATTAA intron-variant
rs1000793940 -- 66,484,661(+) TAATC(C/G)AAGCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC196 Gene

Variant ID Type Subtype PubMed ID
esv2748779 CNV deletion 23290073
nsv525460 CNV loss 19592680
nsv564953 CNV gain 21841781

Relevant External Links for CCDC196 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC196

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC196 Gene

Disorders for CCDC196 Gene

Relevant External Links for CCDC196

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC196
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC196

No disorders were found for CCDC196 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC196 Gene

Publications for CCDC196 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CCDC196 Gene

Sources for CCDC196 Gene

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