Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC192 Gene

Aliases for CCDC192 Gene

  • Coiled-Coil Domain Containing 192 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1183 2 3
  • LINC01183 3 4
  • Coiled-Coil Domain-Containing Protein 192 3
  • Coiled-Coil Domain Containing 2

External Ids for CCDC192 Gene

Previous HGNC Symbols for CCDC192 Gene

  • LINC01183

Summaries for CCDC192 Gene

GeneCards Summary for CCDC192 Gene

CCDC192 (Coiled-Coil Domain Containing 192) is a Protein Coding gene.

Additional gene information for CCDC192 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC192 Gene

Genomics for CCDC192 Gene

Regulatory Elements for CCDC192 Gene

Enhancers for CCDC192 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H126759 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -940.5 -940534 3 HDGF PKNOX1 TBL1XR1 INSM2 BMI1 BATF ZNF366 ATF7 ETV6 RUNX3 CCDC192 PRRC1 PHAX ALDH7A1 RNU6-752P LMNB1
GH05H127028 1.4 ENCODE dbSUPER 13.1 -671.9 -671909 3 PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 SLC30A9 CCDC192 MARCH3 C5orf63 GC05P127033 PIR49999 GC05M127022
GH05H127705 1.1 Ensembl ENCODE 10.8 +3.2 3220 0 ZBTB21 JUN ZNF140 ZNF266 BMI1 ZNF697 ZNF664 ZNF791 ZNF138 ZNF354C PRRC1 CTXN3 CCDC192 GC05M127785
GH05H128536 1 ENCODE 9.8 +835.6 835553 3 SIN3A FEZF1 GLI4 ZNF2 GLIS2 ZNF302 ZNF202 SP3 YY2 ZNF610 FBN2 CCDC192 LINC01184 LOC105379168 ENSG00000207290 GC05M128372
GH05H126875 0.9 ENCODE 10 -826.6 -826630 0 HDAC1 PKNOX1 ARNT INSM2 SIN3A FEZF1 ZNF2 ZNF302 ZNF366 KLF7 MARCH3 CCDC192 GC05M126868 GC05M127022
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC192 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC192 Gene

Chromosome:
5
Start:
127,702,216 bp from pter
End:
128,000,995 bp from pter
Size:
298,780 bases
Orientation:
Plus strand

Genomic View for CCDC192 Gene

Genes around CCDC192 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC192 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC192 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC192 Gene

Proteins for CCDC192 Gene

  • Protein details for CCDC192 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DO97-CC192_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 192
    Protein Accession:
    P0DO97

    Protein attributes for CCDC192 Gene

    Size:
    292 amino acids
    Molecular mass:
    32479 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC192 Gene

Post-translational modifications for CCDC192 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC192 Gene

Domains & Families for CCDC192 Gene

Protein Domains for CCDC192 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC192: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC192 Gene

Function for CCDC192 Gene

Phenotypes From GWAS Catalog for CCDC192 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC192 Gene

Localization for CCDC192 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC192 Gene

Pathways & Interactions for CCDC192 Gene

SuperPathways for CCDC192 Gene

No Data Available

Interacting Proteins for CCDC192 Gene

Gene Ontology (GO) - Biological Process for CCDC192 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC192 Gene

Drugs & Compounds for CCDC192 Gene

No Compound Related Data Available

Transcripts for CCDC192 Gene

mRNA/cDNA for CCDC192 Gene

(10) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC192 Gene

No ASD Table

Relevant External Links for CCDC192 Gene

GeneLoc Exon Structure for
CCDC192
ECgene alternative splicing isoforms for
CCDC192

Expression for CCDC192 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC192 Gene:

CCDC192
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC192 Gene

Orthologs for CCDC192 Gene

Evolution for CCDC192 Gene

ENSEMBL:
Gene Tree for CCDC192 (if available)
TreeFam:
Gene Tree for CCDC192 (if available)

No data available for Orthologs for CCDC192 Gene

Paralogs for CCDC192 Gene

No data available for Paralogs for CCDC192 Gene

Variants for CCDC192 Gene

Sequence variations from dbSNP and Humsavar for CCDC192 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000025180 -- 127,714,847(+) TCTTA(C/T)TGTGG intron-variant
rs1000050726 -- 127,737,458(+) GTGCA(A/G)AGCTG intron-variant
rs1000061862 -- 127,826,084(+) CTCAA(A/G)CTGCA intron-variant
rs1000068541 -- 127,753,656(+) GCACT(C/T)GGCCT intron-variant
rs1000087199 -- 127,730,833(+) TAAAA(A/C)CTCTC intron-variant

Relevant External Links for CCDC192 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC192

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC192 Gene

Disorders for CCDC192 Gene

Relevant External Links for CCDC192

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC192

No disorders were found for CCDC192 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC192 Gene

Publications for CCDC192 Gene

  1. Genome-wide association study of inattention and hyperactivity-impulsivity measured as quantitative traits. (PMID: 23527680) Ebejer JL … Medland SE (Twin research and human genetics : the official journal of the International Society for Twin Studies 2013) 3 60
  2. Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1. (PMID: 22959728) Ahmeti KB … ALSGEN Consortium (Neurobiology of aging 2013) 3 60
  3. A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype. (PMID: 19023125) Potkin SG … FBIRN (Schizophrenia bulletin 2009) 3 60
  4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J … Rubin EM (Nature 2004) 4 60
  5. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for CCDC192 Gene

Sources for CCDC192 Gene

Content
Loading form....