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Aliases for CCDC187 Gene

Aliases for CCDC187 Gene

  • Coiled-Coil Domain Containing 187 2 3 5

External Ids for CCDC187 Gene

Previous GeneCards Identifiers for CCDC187 Gene

  • GC09M136266

Summaries for CCDC187 Gene

GeneCards Summary for CCDC187 Gene

CCDC187 (Coiled-Coil Domain Containing 187) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC187 Gene

Genomics for CCDC187 Gene

Regulatory Elements for CCDC187 Gene

Enhancers for CCDC187 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G136266 1.5 Ensembl ENCODE dbSUPER 0.3 +39.0 38952 2.3 HDGF PKNOX1 ARNT ARID4B GLI4 ZNF121 GTF3C2 ZNF207 ZNF143 KLF7 ANAPC2 GPSM1 SNHG7 LHX3 NDOR1 LOC101928722 CCDC187
GH09G136297 0.2 Ensembl 0.4 +9.5 9544 0.7 CCDC187 LOC101928722
GH09G136311 0.2 Ensembl 0.4 -5.2 -5165 1.7 CCDC187 DKFZP434A062
GH09G136283 0.2 Ensembl 0.3 +22.8 22777 2.0 LOC101928722 CCDC187
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC187 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC187 Gene

Chromosome:
9
Start:
136,249,971 bp from pter
End:
136,306,901 bp from pter
Size:
56,931 bases
Orientation:
Minus strand

Genomic View for CCDC187 Gene

Genes around CCDC187 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC187 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC187 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC187 Gene

Proteins for CCDC187 Gene

  • Protein details for CCDC187 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A096LP49-CC187_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 187
    Protein Accession:
    A0A096LP49
    Secondary Accessions:
    • Q8N5P7

    Protein attributes for CCDC187 Gene

    Size:
    1063 amino acids
    Molecular mass:
    114856 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH31926.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC187 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC187 Gene

Post-translational modifications for CCDC187 Gene

Other Protein References for CCDC187 Gene

No data available for DME Specific Peptides for CCDC187 Gene

Domains & Families for CCDC187 Gene

Protein Domains for CCDC187 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC187: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC187 Gene

Function for CCDC187 Gene

Gene Ontology (GO) - Molecular Function for CCDC187 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008017 microtubule binding IEA --
genes like me logo Genes that share ontologies with CCDC187: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC187 Gene

Localization for CCDC187 Gene

Gene Ontology (GO) - Cellular Components for CCDC187 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005813 centrosome IBA --
genes like me logo Genes that share ontologies with CCDC187: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CCDC187 Gene

Pathways & Interactions for CCDC187 Gene

SuperPathways for CCDC187 Gene

No Data Available

Interacting Proteins for CCDC187 Gene

Gene Ontology (GO) - Biological Process for CCDC187 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0034453 microtubule anchoring IEA --
genes like me logo Genes that share ontologies with CCDC187: view

No data available for Pathways by source and SIGNOR curated interactions for CCDC187 Gene

Drugs & Compounds for CCDC187 Gene

No Compound Related Data Available

Transcripts for CCDC187 Gene

mRNA/cDNA for CCDC187 Gene

(5) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC187 Gene

No ASD Table

Relevant External Links for CCDC187 Gene

GeneLoc Exon Structure for
CCDC187
ECgene alternative splicing isoforms for
CCDC187

Expression for CCDC187 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC187 Gene:

CCDC187
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC187 Gene

Orthologs for CCDC187 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CCDC187 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC464855 34
  • 98.23 (n)
dog
(Canis familiaris)
Mammalia LOC491253 34
  • 73.34 (n)
cow
(Bos Taurus)
Mammalia LOC787891 34
  • 70.99 (n)
mouse
(Mus musculus)
Mammalia 4932418E24Rik 34
  • 67.8 (n)
Ccdc187 16
rat
(Rattus norvegicus)
Mammalia RGD1565512 34
  • 65.55 (n)
Species where no ortholog for CCDC187 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC187 Gene

ENSEMBL:
Gene Tree for CCDC187 (if available)
TreeFam:
Gene Tree for CCDC187 (if available)

Paralogs for CCDC187 Gene

No data available for Paralogs for CCDC187 Gene

Variants for CCDC187 Gene

Sequence variations from dbSNP and Humsavar for CCDC187 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000064550 -- 136,293,615(+) ATGCA(C/T)GCCAA intron-variant
rs1000197548 -- 136,284,095(+) ACCTC(A/G)GGCCA intron-variant
rs1000272464 -- 136,289,925(+) CCCGC(A/C)CGGCA intron-variant
rs1000362362 -- 136,281,688(+) GTGTG(A/G)CAGGG intron-variant
rs1000390748 -- 136,273,977(+) TGCTG(A/G)CACAC intron-variant

Relevant External Links for CCDC187 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC187

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC187 Gene

Disorders for CCDC187 Gene

No disorders were found for CCDC187 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CCDC187 Gene

Publications for CCDC187 Gene

  1. Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. (PMID: 25751143) Clark M.B. … Dinger M.E. (Nat. Methods 2015) 2 3 64
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CCDC187 Gene

Sources for CCDC187 Gene

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