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Aliases for CCDC183-AS1 Gene

Subcategory (RNA class) for CCDC183-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC183-AS1 Gene

  • CCDC183 Antisense RNA 1 2 3 5
  • KIAA1984 Antisense RNA 1 (Non-Protein Coding) 2
  • KIAA1984 Antisense RNA 1 2
  • KIAA1984-AS1 3

External Ids for CCDC183-AS1 Gene

Previous HGNC Symbols for CCDC183-AS1 Gene

  • KIAA1984-AS1

Previous GeneCards Identifiers for CCDC183-AS1 Gene

  • GC09M139701

Summaries for CCDC183-AS1 Gene

GeneCards Summary for CCDC183-AS1 Gene

CCDC183-AS1 (CCDC183 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC183-AS1 Gene

Genomics for CCDC183-AS1 Gene

Regulatory Elements for CCDC183-AS1 Gene

Enhancers for CCDC183-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F136784 0.9 ENCODE 11.8 +23.3 23281 1.8 TBP HDAC1 PKNOX1 ATF1 ARNT DMAP1 SIRT6 FOS JUNB USF2 LCN8 ABCA2 LCN10 CCDC183-AS1 RABL6 LCN12 PRR31 FBXW5 C8G TMEM141
GH09F136884 0.7 ENCODE 11.5 -77.4 -77427 3.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF207 ZNF143 FOS CEBPZ PHPT1 SNHG7 MAMDC4 C9orf172 C8G FBXW5 LCN12 TMEM141 PRR31 CCDC183-AS1
GH09F136925 0.8 Ensembl ENCODE 11.2 -118.5 -118503 3.7 CTCF ESRRA PKNOX1 RAD21 ZFHX2 ZNF316 POLR2A NFE2 ZNF600 MAFK LCN12 TRAF2 CCDC183 PRR31 MAMDC4 PHPT1 C9orf172 RABL6 CCDC183-AS1 ENSG00000238268
GH09F136932 1.2 FANTOM5 ENCODE 11.2 -123.5 -123456 0.2 ZNF316 MAFG NFE2 EMSY MAFK NFE2L2 TRAF2 MAMDC4 PHPT1 C9orf172 RABL6 CCDC183 CCDC183-AS1 LCNL1 NDOR1 NOTCH1
GH09F136881 0.2 ENCODE 10.9 -73.8 -73815 2.7 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 GLIS2 ELK1 PHPT1 MAMDC4 C9orf172 TMEM141 LCN12 PRR31 C8G FBXW5 RABL6 C9orf139
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC183-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC183-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001317767 448 2801 ARNT CREB3L1 SIN3A ARID4B DMAP1 ZNF2 YY1 ZNF121 GLIS2 ZNF263

Genomic Location for CCDC183-AS1 Gene

Chromosome:
9
Start:
136,803,927 bp from pter
End:
136,808,848 bp from pter
Size:
4,922 bases
Orientation:
Minus strand

Genomic View for CCDC183-AS1 Gene

Genes around CCDC183-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC183-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC183-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC183-AS1 Gene

Proteins for CCDC183-AS1 Gene

Post-translational modifications for CCDC183-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC183-AS1 Gene

Domains & Families for CCDC183-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC183-AS1 Gene

Function for CCDC183-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC183-AS1 Gene

Localization for CCDC183-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC183-AS1 Gene

Pathways & Interactions for CCDC183-AS1 Gene

SuperPathways for CCDC183-AS1 Gene

No Data Available

Interacting Proteins for CCDC183-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC183-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC183-AS1 Gene

Transcripts for CCDC183-AS1 Gene

mRNA/cDNA for CCDC183-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC183-AS1 Gene

No ASD Table

Relevant External Links for CCDC183-AS1 Gene

GeneLoc Exon Structure for
CCDC183-AS1
ECgene alternative splicing isoforms for
CCDC183-AS1

Expression for CCDC183-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC183-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC183-AS1 Gene

This gene is overexpressed in Testis (x5.8) and Brain - Cerebellum (x4.1).
genes like me logo Genes that share expression patterns with CCDC183-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCDC183-AS1 Gene

Orthologs for CCDC183-AS1 Gene

Evolution for CCDC183-AS1 Gene

ENSEMBL:
Gene Tree for CCDC183-AS1 (if available)
TreeFam:
Gene Tree for CCDC183-AS1 (if available)

No data available for Orthologs for CCDC183-AS1 Gene

Paralogs for CCDC183-AS1 Gene

No data available for Paralogs for CCDC183-AS1 Gene

Variants for CCDC183-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC183-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10710086 -- 136,808,840(+) TCGCC(-/T)TTTTT intron-variant, nc-transcript-variant
rs11145888 -- 136,803,597(+) TCCAG(A/T)AGTCC intron-variant, downstream-variant-500B
rs11145892 -- 136,804,525(+) GAGGC(A/G)TCCTT nc-transcript-variant, reference, synonymous-codon
rs112464708 -- 136,803,821(+) GAGGC(C/T)GCAGA intron-variant, downstream-variant-500B
rs113350781 -- 136,809,497(+) CCGGG(C/G)CGGGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC183-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1246n67 CNV gain 20364138
esv2422220 CNV deletion 17116639
esv2759720 CNV loss 17122850
esv29973 CNV loss 17803354
esv3891732 CNV loss 25118596
nsv1119616 CNV deletion 24896259
nsv469918 CNV loss 18288195
nsv524322 CNV loss 19592680
nsv818738 CNV gain 17921354
nsv951204 CNV deletion 24416366

Relevant External Links for CCDC183-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC183-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC183-AS1 Gene

Disorders for CCDC183-AS1 Gene

Relevant External Links for CCDC183-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC183-AS1

No disorders were found for CCDC183-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC183-AS1 Gene

Publications for CCDC183-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for CCDC183-AS1 Gene

Sources for CCDC183-AS1 Gene

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