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Aliases for CCDC183-AS1 Gene

Subcategory (RNA class) for CCDC183-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC183-AS1 Gene

  • CCDC183 Antisense RNA 1 2 3 5
  • KIAA1984 Antisense RNA 1 (Non-Protein Coding) 2
  • KIAA1984 Antisense RNA 1 2
  • KIAA1984-AS1 3

External Ids for CCDC183-AS1 Gene

Previous HGNC Symbols for CCDC183-AS1 Gene

  • KIAA1984-AS1

Previous GeneCards Identifiers for CCDC183-AS1 Gene

  • GC09M139701

Summaries for CCDC183-AS1 Gene

GeneCards Summary for CCDC183-AS1 Gene

CCDC183-AS1 (CCDC183 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC183-AS1 Gene

Genomics for CCDC183-AS1 Gene

Regulatory Elements for CCDC183-AS1 Gene

Enhancers for CCDC183-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G136563 2.4 VISTA FANTOM5 Ensembl ENCODE dbSUPER 9.8 +240.3 240306 10.7 HDGF FOXA2 MLX WRNIP1 ARID4B SIN3A YBX1 ZBTB7B SLC30A9 ZNF143 NOTCH1 SNAPC4 ANAPC2 CCDC183-AS1 SEC16A FUT7 TMEM250 NACC2 MIR4674 LINC01451
GH09G136613 2 FANTOM5 Ensembl ENCODE dbSUPER 9.8 +188.0 187987 14.5 HDGF PKNOX1 FOXA2 MLX AGO1 ZFP64 SIN3A ARID4B DMAP1 YY1 DPH7 ARRDC1-AS1 SNAPC4 ANAPC2 NOTCH1 CCDC183-AS1 FUT7 EGFL7 SEC16A ABCA2
GH09G137309 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -506.9 -506934 12.7 HDGF PKNOX1 ATF1 CREB3L1 AGO1 ARID4B SIN3A ZNF48 ZBTB7B GLIS2 DPH7 NOXA1 ARRDC1-AS1 NPDC1 SNAPC4 EXD3 ANAPC2 CCDC183-AS1 NRARP PNPLA7
GH09G137166 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.8 -362.3 -362297 10.1 HDGF AGO1 SIN3A ZNF2 ZBTB7B GLIS2 KLF7 ZNF263 SP3 REST TPRN DPH7 ARRDC1-AS1 NDOR1 TMEM203 GRIN1 DPP7 MAN1B1 SNAPC4 ANAPC2
GH09G136881 1.6 Ensembl ENCODE dbSUPER 10.9 -73.8 -73815 2.7 HDGF PKNOX1 FOXA2 MLX AGO1 ARID4B SIN3A DMAP1 YY1 SLC30A9 PHPT1 MAMDC4 C9orf172 TMEM141 LCN12 PRR31 FBXW5 C8G RABL6 C9orf139
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC183-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC183-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000243093 648 2001 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 GLIS2 ELK1 ZNF143

Genomic Location for CCDC183-AS1 Gene

Chromosome:
9
Start:
136,803,927 bp from pter
End:
136,808,848 bp from pter
Size:
4,922 bases
Orientation:
Minus strand

Genomic View for CCDC183-AS1 Gene

Genes around CCDC183-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC183-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC183-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC183-AS1 Gene

Proteins for CCDC183-AS1 Gene

Post-translational modifications for CCDC183-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC183-AS1 Gene

Domains & Families for CCDC183-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC183-AS1 Gene

Function for CCDC183-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC183-AS1 Gene

Localization for CCDC183-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC183-AS1 Gene

Pathways & Interactions for CCDC183-AS1 Gene

SuperPathways for CCDC183-AS1 Gene

No Data Available

Interacting Proteins for CCDC183-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC183-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC183-AS1 Gene

Drugs & Compounds for CCDC183-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC183-AS1 Gene

mRNA/cDNA for CCDC183-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC183-AS1 Gene

No ASD Table

Relevant External Links for CCDC183-AS1 Gene

GeneLoc Exon Structure for
CCDC183-AS1
ECgene alternative splicing isoforms for
CCDC183-AS1

Expression for CCDC183-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC183-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC183-AS1 Gene

This gene is overexpressed in Testis (x5.8) and Brain - Cerebellum (x4.1).
genes like me logo Genes that share expression patterns with CCDC183-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC183-AS1 Gene

Orthologs for CCDC183-AS1 Gene

Evolution for CCDC183-AS1 Gene

ENSEMBL:
Gene Tree for CCDC183-AS1 (if available)
TreeFam:
Gene Tree for CCDC183-AS1 (if available)

No data available for Orthologs for CCDC183-AS1 Gene

Paralogs for CCDC183-AS1 Gene

No data available for Paralogs for CCDC183-AS1 Gene

Variants for CCDC183-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC183-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000274682 -- 136,807,463(+) TCCCT(C/G)GGGCA intron-variant, upstream-variant-2KB
rs1000881418 -- 136,806,278(+) CCCAG(A/T)CTCAC intron-variant, upstream-variant-2KB
rs1001210274 -- 136,803,742(+) GAGGA(A/G)GAGGT intron-variant, downstream-variant-500B
rs1001258309 -- 136,807,454(+) CTGGG(A/G)CTGTC intron-variant, upstream-variant-2KB
rs1001262729 -- 136,803,854(+) GGAGG(C/T)GGCTG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CCDC183-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1246n67 CNV gain 20364138
esv2422220 CNV deletion 17116639
esv2759720 CNV loss 17122850
esv29973 CNV loss 17803354
esv3891732 CNV loss 25118596
nsv1119616 CNV deletion 24896259
nsv469918 CNV loss 18288195
nsv524322 CNV loss 19592680
nsv818738 CNV gain 17921354
nsv951204 CNV deletion 24416366

Relevant External Links for CCDC183-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC183-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC183-AS1 Gene

Disorders for CCDC183-AS1 Gene

Relevant External Links for CCDC183-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC183-AS1

No disorders were found for CCDC183-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC183-AS1 Gene

Publications for CCDC183-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for CCDC183-AS1 Gene

Sources for CCDC183-AS1 Gene

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