Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC18-AS1 Gene

Subcategory (RNA class) for CCDC18-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC18-AS1 Gene

  • CCDC18 Antisense RNA 1 2 3 5
  • ENST00000440778.1 3

External Ids for CCDC18-AS1 Gene

Summaries for CCDC18-AS1 Gene

GeneCards Summary for CCDC18-AS1 Gene

CCDC18-AS1 (CCDC18 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC18-AS1 Gene

Genomics for CCDC18-AS1 Gene

Regulatory Elements for CCDC18-AS1 Gene

Enhancers for CCDC18-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G093177 1.4 ENCODE dbSUPER 96.6 +166.0 166002 4.7 CREB3L1 FEZF1 DMAP1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC CCDC18-AS1 SNORA66 SNORD21 RPL5 DNTTIP2 DR1 CCDC18 ENSG00000230439 FNBP1L TMED5
GH01G093078 1.2 ENCODE 102 +265.6 265590 4.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 CCDC18-AS1 SNORA66 SNORD21 TRR-TCT1-1 RPL5 KIAA1107 DNTTIP2 CCDC18 TMED5 RPAP2
GH01G093344 1.4 ENCODE dbSUPER 71 -1.5 -1519 5.9 MLX CREB3L1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC CCDC18-AS1 DR1 SNORD21 SNORA66 CCDC18 EVI5 FNBP1L GC01M093359
GH01G093324 1.2 Ensembl ENCODE dbSUPER 73.9 +20.9 20851 1.9 TBP JUN ZNF133 MAX FEZF1 ZBTB40 YY1 GATA3 RCOR1 FOS CCDC18-AS1 DR1 CCDC18 FAM69A FNBP1L GC01P093330 GC01P093285
GH01G093337 1.3 Ensembl ENCODE dbSUPER 60.4 +7.2 7207 1.7 GTF2F1 TBP MXI1 JUN MAX RAD21 BRCA1 RFX5 FOSL1 HIC1 CCDC18-AS1 GC01P093330 DR1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC18-AS1 Gene

Chromosome:
1
Start:
93,262,186 bp from pter
End:
93,346,025 bp from pter
Size:
83,840 bases
Orientation:
Minus strand

Genomic View for CCDC18-AS1 Gene

Genes around CCDC18-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC18-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC18-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC18-AS1 Gene

Proteins for CCDC18-AS1 Gene

Post-translational modifications for CCDC18-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC18-AS1 Gene

Domains & Families for CCDC18-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC18-AS1 Gene

Function for CCDC18-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC18-AS1 Gene

Localization for CCDC18-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC18-AS1 Gene

Pathways & Interactions for CCDC18-AS1 Gene

SuperPathways for CCDC18-AS1 Gene

No Data Available

Interacting Proteins for CCDC18-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC18-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC18-AS1 Gene

Drugs & Compounds for CCDC18-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC18-AS1 Gene

mRNA/cDNA for CCDC18-AS1 Gene

(24) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC18-AS1 Gene

No ASD Table

Relevant External Links for CCDC18-AS1 Gene

GeneLoc Exon Structure for
CCDC18-AS1
ECgene alternative splicing isoforms for
CCDC18-AS1

Expression for CCDC18-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC18-AS1 Gene

Orthologs for CCDC18-AS1 Gene

Evolution for CCDC18-AS1 Gene

ENSEMBL:
Gene Tree for CCDC18-AS1 (if available)
TreeFam:
Gene Tree for CCDC18-AS1 (if available)

No data available for Orthologs for CCDC18-AS1 Gene

Paralogs for CCDC18-AS1 Gene

No data available for Paralogs for CCDC18-AS1 Gene

Variants for CCDC18-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC18-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000023515 -- 93,310,933(+) AGAAT(C/T)GCTTG nc-transcript-variant
rs1000093620 -- 93,314,928(+) CATTT(G/T)TTGTA intron-variant
rs1000181023 -- 93,334,074(+) TTTTC(G/T)GAGAC intron-variant
rs1000255309 -- 93,325,092(+) ATAGT(G/T)GAGTA intron-variant
rs1000309153 -- 93,325,344(+) ATTTC(A/T)TACTG intron-variant

Relevant External Links for CCDC18-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC18-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC18-AS1 Gene

Disorders for CCDC18-AS1 Gene

Relevant External Links for CCDC18-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC18-AS1

No disorders were found for CCDC18-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC18-AS1 Gene

Publications for CCDC18-AS1 Gene

  1. Expression Signatures of Long Noncoding RNAs in Adolescent Idiopathic Scoliosis. (PMID: 26421281) Liu X.Y. … Wang Y.P. (Biomed Res Int 2015) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CCDC18-AS1 Gene

Sources for CCDC18-AS1 Gene

Content
Loading form....