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Aliases for CCDC18 Gene

Aliases for CCDC18 Gene

  • Coiled-Coil Domain Containing 18 2 3 5
  • Sarcoma Antigen NY-SAR-24 3 4
  • Coiled-Coil Domain-Containing Protein 18 3
  • Sarcoma Antigen NY-SAR-41 3
  • NY-SAR-41 3

External Ids for CCDC18 Gene

Previous GeneCards Identifiers for CCDC18 Gene

  • GC01P093359
  • GC01P093418
  • GC01P093645
  • GC01P091767

Summaries for CCDC18 Gene

GeneCards Summary for CCDC18 Gene

CCDC18 (Coiled-Coil Domain Containing 18) is a Protein Coding gene. GO annotations related to this gene include nucleotide binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC18 Gene

Genomics for CCDC18 Gene

Regulatory Elements for CCDC18 Gene

Enhancers for CCDC18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F093221 0.4 ENCODE 21.1 +42.2 42225 1.1 MLX DMAP1 RAD21 ZEB1 RARA ZNF366 CREM MIXL1 THAP11 ZNF362 CCDC18 TMED5 MTF2 ENSG00000225297 LOC100130531
GH01F093124 0.4 Ensembl 11.5 -55.0 -55019 0.2 ZNF316 ZNF837 HLF BACH1 POU5F1 EMSY CCDC18 TMED5 CCDC18-AS1 GC01P093147 MTF2
GH01F093122 0.6 ENCODE 11.5 -56.5 -56544 1.6 JUND GLIS1 ZBTB33 CCDC18 TMED5 GC01P093147 MTF2
GH01F093219 0.7 Ensembl 11 +39.8 39782 0.6 TMED5 CCDC18 MTF2 FNBP1L ENSG00000225297 LOC100130531
GH01F093078 0.6 ENCODE 10.9 -99.5 -99484 4.5 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 CCDC18-AS1 SNORA66 SNORD21 RPL5 DNTTIP2 DR1 LOC100289500 ACTBP12 MTCO3P21 ENSG00000230439
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC18 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC18 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000540842 -119 4801 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF302 ZNF416

Genomic Location for CCDC18 Gene

Chromosome:
1
Start:
93,179,919 bp from pter
End:
93,279,037 bp from pter
Size:
99,119 bases
Orientation:
Plus strand

Genomic View for CCDC18 Gene

Genes around CCDC18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC18 Gene

Proteins for CCDC18 Gene

  • Protein details for CCDC18 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T9S5-CCD18_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 18
    Protein Accession:
    Q5T9S5
    Secondary Accessions:
    • Q6ZU17

    Protein attributes for CCDC18 Gene

    Size:
    1454 amino acids
    Molecular mass:
    168962 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC86410.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC18 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC18 Gene

Post-translational modifications for CCDC18 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC18 Gene

Domains & Families for CCDC18 Gene

Protein Domains for CCDC18 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC18: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC18 Gene

Function for CCDC18 Gene

genes like me logo Genes that share phenotypes with CCDC18: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC18 Gene

Localization for CCDC18 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC18 Gene COMPARTMENTS Subcellular localization image for CCDC18 gene
Compartment Confidence
cytosol 3
nucleus 3
mitochondrion 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC18 Gene

Pathways & Interactions for CCDC18 Gene

SuperPathways for CCDC18 Gene

No Data Available

Interacting Proteins for CCDC18 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000359299%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: Q5T9S5-CCD18_HUMAN ENSP00000359299 for CCDC18 Gene via IID STRING

Gene Ontology (GO) - Biological Process for CCDC18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC18 Gene

Transcripts for CCDC18 Gene

Unigene Clusters for CCDC18 Gene

Coiled-coil domain containing 18:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC18 Gene

No ASD Table

Relevant External Links for CCDC18 Gene

GeneLoc Exon Structure for
CCDC18
ECgene alternative splicing isoforms for
CCDC18

Expression for CCDC18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC18 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCDC18 Gene

This gene is overexpressed in Testis (x4.5).

Protein differential expression in normal tissues from HIPED for CCDC18 Gene

This gene is overexpressed in Brain (20.8), Plasma (20.4), and Bone marrow mesenchymal stem cell (17.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CCDC18 Gene



NURSA nuclear receptor signaling pathways regulating expression of CCDC18 Gene:

CCDC18

SOURCE GeneReport for Unigene cluster for CCDC18 Gene:

Hs.745125
genes like me logo Genes that share expression patterns with CCDC18: view

Primer Products

No data available for Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCDC18 Gene

Orthologs for CCDC18 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC18 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC18 34 35
  • 99.72 (n)
dog
(Canis familiaris)
Mammalia CCDC18 34 35
  • 91.87 (n)
cow
(Bos Taurus)
Mammalia LOC540863 34
  • 91.6 (n)
CCDC18 35
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc18 34
  • 87.13 (n)
mouse
(Mus musculus)
Mammalia Ccdc18 34 16 35
  • 86.73 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC18 35
  • 60 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC18 35
  • 31 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC18 34 35
  • 65.11 (n)
lizard
(Anolis carolinensis)
Reptilia CCDC18 35
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc18 34
  • 56.18 (n)
African clawed frog
(Xenopus laevis)
Amphibia sojo-A 34
zebrafish
(Danio rerio)
Actinopterygii si:dkeyp-1a11.3 34
  • 48.19 (n)
CCDC18 35
  • 33 (a)
OneToOne
Species where no ortholog for CCDC18 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC18 Gene

ENSEMBL:
Gene Tree for CCDC18 (if available)
TreeFam:
Gene Tree for CCDC18 (if available)

Paralogs for CCDC18 Gene

genes like me logo Genes that share paralogs with CCDC18: view

No data available for Paralogs for CCDC18 Gene

Variants for CCDC18 Gene

Sequence variations from dbSNP and Humsavar for CCDC18 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10538532 -- 93,211,276(+) CCATT(-/A)AAAAA intron-variant
rs10593167 -- 93,226,543(+) TATAT(-/A)TTTCT intron-variant, upstream-variant-2KB
rs10601381 -- 93,184,606(+) TGAAA(-/CT)CTCTT intron-variant, upstream-variant-2KB
rs10622842 -- 93,201,684(+) TTGTG(-/TTATA)GTTTT intron-variant
rs10714121 -- 93,264,113(+) GAGAC(-/A)AGAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC18 Gene

Variant ID Type Subtype PubMed ID
esv3586825 CNV loss 21293372
esv3586826 CNV loss 21293372
nsv830614 CNV loss 17160897
nsv830625 CNV loss 17160897
nsv946080 CNV duplication 23825009
nsv946082 CNV duplication 23825009

Relevant External Links for CCDC18 Gene

Human Gene Mutation Database (HGMD)
CCDC18
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC18 Gene

Disorders for CCDC18 Gene

Relevant External Links for CCDC18

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC18

No disorders were found for CCDC18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC18 Gene

Publications for CCDC18 Gene

  1. Immunomic analysis of human sarcoma. (PMID: 12601173) Lee S.-Y. … Scanlan M.J. (Proc. Natl. Acad. Sci. U.S.A. 2003) 2 3 64
  2. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  5. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3 64

Products for CCDC18 Gene

Sources for CCDC18 Gene

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