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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC176 Gene

protein-coding   GIFtS: 32
GCID: GC14P074487

Coiled-Coil Domain Containing 176

(Previous name: chromosome 14 open reading frame 45)
(Previous symbol: C14orf45)
  Search for CCDC176
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 1761 2
C14orf451 2 3
Chromosome 14 Open Reading Frame 451
Coiled-Coil Domain-Containing Protein 1762

External Ids:    HGNC: 198551   Entrez Gene: 801272   Ensembl: ENSG000001196367   UniProtKB: Q8ND073   

Export aliases for CCDC176 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC176 Gene: 
CCDC176 (coiled-coil domain containing 176) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NT_026437.12  NC_018925.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for CCDC176
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for CCDC176

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC176


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q24.3   Ensembl cytogenetic band:  14q24.3   HGNC cytogenetic band: 14q24.3

CCDC176 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC176 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P074487:  view genomic region     (about GC identifiers)

Start:
74,486,056 bp from pter      End:
74,549,566 bp from pter
Size:
63,511 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CC176_HUMAN, Q8ND07 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 176  
Size: 529 amino acids; 61987 Da
Sequence caution: Sequence=AAI04980.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=AAI04982.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAB15572.1;
Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BC044808; Type=Frameshift;
Positions=428, 448;
Secondary accessions: Q0P604 Q9H5P8

Explore the universe of human proteins at neXtProt for CCDC176: NX_Q8ND07

Explore proteomics data for CCDC176 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q8ND07

  • CCDC176 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC176 Protein Expression
    REFSEQ proteins: NP_079333.2  
    ENSEMBL proteins: 
     ENSP00000451659   ENSP00000377577   ENSP00000451020   ENSP00000451097  

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    Browse CLIAs at Cloud-Clone Corp.


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q8ND07


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC176 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for CCDC176

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC176

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC176 (CC176)

    Search CenterWatch for drugs/clinical trials and news about CCDC176 / CC176

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC176 gene: 
    NM_025057.2  

    Unigene Cluster for CCDC176:

    Coiled-coil domain containing 176
    Hs.644621  [show with all ESTs]
    Unigene Representative Sequence: NM_025057
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000464394 ENST00000394009(uc010tup.2) ENST00000489323 ENST00000463558
    ENST00000477986 ENST00000492247 ENST00000553773
    miRNA
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    Inhib. RNA
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                         Customized lentivirus expression plasmids for stable overexpression of CCDC176 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC176
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC176

    Additional mRNA sequence: 

    AK026842.1 AK123178.1 AL834487.1 BC044808.1 BC104979.1 BC104981.1 

    14 DOTS entries:

    DT.307532  DT.97836729  DT.99930821  DT.437790  DT.415528  DT.101969269  DT.70103907  DT.75168509 
    DT.95346619  DT.97795480  DT.120749896  DT.91811355  DT.95206476  DT.97799801 

    24/53 AceView cDNA sequences (see all 53):

    BM980918 AI765503 AI304946 AK026842 BI821464 BU622360 BE220437 BF111227 
    AK097531 NM_025057 AA682345 AA460298 AL834487 AA970360 BU568261 BI457605 
    BI464060 AA621785 AW028590 BF223846 BG547614 BQ187738 BI559343 BF196844 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC176    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6
    SP1:                                          
    SP2:              -                           


    ECgene alternative splicing isoforms for CCDC176

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC176 expression in normal human tissues (normalized intensities)      CCDC176 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    CCDC176 Expression
    About this image


    CCDC176 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Pancreas (Endocrine System)
             Posterior foregut-like cells ( A scalable, suspension protocol for derivation of...
     
     Adipose (Muscoskeletal System)
             Mesenchymal Stem Cells Subcutaneous White Adipose

    See CCDC176 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC176

    SOURCE GeneReport for Unigene cluster: Hs.644621
        SABiosciences Custom PCR Arrays for CCDC176
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC176

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for CCDC176 gene from 5/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc1761 , 5 RIKEN cDNA 2900006K08 gene5
    coiled-coil domain containing 1761
    84.23(n)1
    79.5(a)1
      12 (39.20 cM)5
    728731  NM_028377.31  NP_082653.21 
     844090715 
    chicken
    (Gallus gallus)
    Aves CCDC1761 coiled-coil domain containing 176 63.92(n)
    54(a)
      423344  XM_421259.3  XP_421259.3 
    lizard
    (Anolis carolinensis)
    Reptilia C14ORF456
    Uncharacterized protein
    56(a)
    1 ↔ 1
    1(23743109-23756162)
    zebrafish
    (Danio rerio)
    Actinopterygii si:ch211-243o19.41 si:ch211-243o19.4 53.09(n)
    41.73(a)
      100141366  NM_001114930.1  NP_001108402.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG171226
    --
    13(a)
    1 → many
    3L(20266489-20268435)


    ENSEMBL Gene Tree for CCDC176 (if available)
    TreeFam Gene Tree for CCDC176 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CCDC176 gene

    CCDC176 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for CCDC176
    PGOHUM00000258196


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1085 SNPs in CCDC176 are shown (see all 1085)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs339597301,2
    C--54653861(+) AGTAC-/TTTTTT 1 -- int10--------
    rs601650051,2
    C--54660766(+) TTTTT-/T/TT  
            
    GCAGA
    1 -- int11NA 2
    rs1997118001,2
    C--54662325(+) ACACA-/CAC   
       
    /CACA
    AAAGT
    2 -- int1 cds10--------
    rs2018982071,2
    C--54664288(+) TATAT-/AGAG  
            
    ATATA
    1 -- int10--------
    rs2002041121,2
    --54664292(+) TATAT-/AGATATA 1 -- int10--------
    rs2009160021,2
    C--54664292(+) ATATAG/TATATA 1 -- int10--------
    rs2017531391,2
    C--54664294(+) ATATAG/TATAGA 1 -- int10--------
    rs350783211,2
    C,F--54672708(+) TTTTTT/-GTATT 1 -- int12Minor allele frequency- -:0.50NA CSA 4
    rs105740901,2
    C--54675983(+) cacag-/ACacaca 1 -- int10--------
    rs71402231,2
    C,F--54695460(+) CTGGGA/GAAAAA 1 -- int1 trp33Minor allele frequency- G:0.40NA CSA 10

    HapMap Linkage Disequilibrium report for CCDC176 (74486056 - 74549566 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for CCDC176: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing CCDC176
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC176

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC176 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with CCDC176)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    4. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
    5. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    6. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1 Olsen J.V....Mann M. (2006)
    7. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)2 Heilig R.... Weissenbach J. (2003)
    8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 80127 HGNC: 19855 AceView: C14orf45 Ensembl:ENSG00000119636 euGenes: HUgn80127
    ECgene: CCDC176 H-InvDB: CCDC176

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC176 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC176 gene:
    Search GeneIP for patents involving CCDC176

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
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