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Aliases for CCDC172 Gene

Aliases for CCDC172 Gene

  • Coiled-Coil Domain Containing 172 2 3
  • C10orf96 3 4
  • Coiled-Coil Domain-Containing Protein 172 3
  • Chromosome 10 Open Reading Frame 96 2
  • UPF0628 Protein C10orf96 3

External Ids for CCDC172 Gene

Previous Symbols for CCDC172 Gene

  • C10orf96

Summaries for CCDC172 Gene

GeneCards Summary for CCDC172 Gene

CCDC172 (Coiled-Coil Domain Containing 172) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC172 Gene

Genomics for CCDC172 Gene

Genomic Location for CCDC172 Gene

Start:
116,324,428 bp from pter
End:
116,380,029 bp from pter
Size:
55,602 bases
Orientation:
Plus strand

Genomic View for CCDC172 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC172 Gene

No data available for Regulatory Elements for CCDC172 Gene

Proteins for CCDC172 Gene

  • Protein details for CCDC172 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C7W6-CC172_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 172
    Protein Accession:
    P0C7W6
    Secondary Accessions:

    Protein attributes for CCDC172 Gene

    Size:
    258 amino acids
    Molecular mass:
    31035 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC172 Gene

Proteomics data for CCDC172 Gene at MOPED

Post-translational modifications for CCDC172 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC172 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC172 Gene

Domains for CCDC172 Gene

Protein Domains for CCDC172 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CC172_HUMAN
Family:
  • Belongs to the CCDC172 family.:
    • P0C7W6
genes like me logo Genes that share domains with CCDC172: view

No data available for Gene Families for CCDC172 Gene

Function for CCDC172 Gene

Gene Ontology (GO) - Molecular Function for CCDC172 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC172: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC172 Gene

Localization for CCDC172 Gene

No data available for Gene Ontology (GO) - Cellular Components for CCDC172 Gene

Pathways for CCDC172 Gene

SuperPathways for CCDC172 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC172 Gene

None

No data available for Pathways by source for CCDC172 Gene

Transcripts for CCDC172 Gene

mRNA/cDNA for CCDC172 Gene

(5) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC172 Gene

Coiled-coil domain containing 172:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC172 Gene

No ASD Table

Relevant External Links for CCDC172 Gene

GeneLoc Exon Structure for
CCDC172
ECgene alternative splicing isoforms for
CCDC172

Expression for CCDC172 Gene

mRNA expression in normal human tissues for CCDC172 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCDC172 Gene

This gene is overexpressed in Testis (51.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CCDC172 Gene

SOURCE GeneReport for Unigene cluster for CCDC172 Gene Hs.233407

genes like me logo Genes that share expressions with CCDC172: view

Orthologs for CCDC172 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC172 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC172 36
  • 99.22 (n)
  • 99.22 (a)
CCDC172 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC172 36
  • 89.49 (n)
  • 83.27 (a)
CCDC172 37
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC172 36
  • 90.57 (n)
  • 82.56 (a)
CCDC172 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc172 36
  • 80.42 (n)
  • 70.43 (a)
Ccdc172 16
Ccdc172 37
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC172 37
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC172 37
  • 59 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc172 36
  • 80.16 (n)
  • 71.98 (a)
chicken
(Gallus gallus)
Aves C10ORF96 36
  • 69.05 (n)
  • 53.17 (a)
CCDC172 37
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC172 37
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc172 36
  • 56.88 (n)
  • 48.41 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc172 36
  • 47.38 (n)
  • 31.89 (a)
ccdc172 37
  • 31 (a)
OneToOne
Species with no ortholog for CCDC172:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC172 Gene

ENSEMBL:
Gene Tree for CCDC172 (if available)
TreeFam:
Gene Tree for CCDC172 (if available)

Paralogs for CCDC172 Gene

No data available for Paralogs for CCDC172 Gene

Variants for CCDC172 Gene

Sequence variations from dbSNP and Humsavar for CCDC172 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs950585 -- 116,338,723(-) TCTTT(C/T)AGCTA intron-variant
rs1419870 -- 116,340,292(-) AATCT(A/G)CAAAG intron-variant
rs1419871 -- 116,329,334(-) GCCCA(G/T)TACAA intron-variant
rs1894788 -- 116,335,818(-) GTTTA(A/G)TAAAG intron-variant
rs1897506 -- 116,332,992(-) AATTA(A/G)AGTGT intron-variant

Relevant External Links for CCDC172 Gene

HapMap Linkage Disequilibrium report
CCDC172

No data available for Structural Variations from Database of Genomic Variants (DGV) for CCDC172 Gene

Disorders for CCDC172 Gene

No disorders were found for CCDC172 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC172 Gene

Publications for CCDC172 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  4. A Y2H-seq approach defines the human protein methyltransferase interactome. (PMID: 23455924) Weimann M. … Stelzl U. (Nat. Methods 2013) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for CCDC172 Gene

Sources for CCDC172 Gene

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