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Aliases for CCDC170 Gene

Aliases for CCDC170 Gene

  • Coiled-Coil Domain Containing 170 2 3
  • C6orf97 3 4
  • Chromosome 6 Open Reading Frame 97 2
  • BA282P11.1 3

External Ids for CCDC170 Gene

Previous HGNC Symbols for CCDC170 Gene

  • C6orf97

Previous GeneCards Identifiers for CCDC170 Gene

  • GC06P151815

Summaries for CCDC170 Gene

Entrez Gene Summary for CCDC170 Gene

  • The function of this gene and its encoded protein is not known. Several genome-wide association studies have implicated the region around this gene to be involved in breast cancer and bone mineral density, but no link to this specific gene has been found. [provided by RefSeq, May 2010]

GeneCards Summary for CCDC170 Gene

CCDC170 (Coiled-Coil Domain Containing 170) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC170 Gene

Genomics for CCDC170 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC170 Gene

Chromosome:
6
Start:
151,494,030 bp from pter
End:
151,621,193 bp from pter
Size:
127,164 bases
Orientation:
Plus strand

Genomic View for CCDC170 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC170 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC170 Gene

No data available for Regulatory Elements for CCDC170 Gene

Proteins for CCDC170 Gene

  • Protein details for CCDC170 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYT3-CC170_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 170
    Protein Accession:
    Q8IYT3
    Secondary Accessions:
    • Q5VXB7
    • Q6P9E4
    • Q96KA9
    • Q9H5M3

    Protein attributes for CCDC170 Gene

    Size:
    715 amino acids
    Molecular mass:
    82277 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB55025.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH71980.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI10943.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for CCDC170 Gene

Proteomics data for CCDC170 Gene at MOPED

Post-translational modifications for CCDC170 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC170 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC170 Gene

Domains & Families for CCDC170 Gene

Protein Domains for CCDC170 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC170 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC170: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC170 Gene

Function for CCDC170 Gene

Gene Ontology (GO) - Molecular Function for CCDC170 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC170: view

Phenotypes for CCDC170 Gene

genes like me logo Genes that share phenotypes with CCDC170: view

Animal Model Products

CRISPR Products

miRNA for CCDC170 Gene

miRTarBase miRNAs that target CCDC170

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC170

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC170 Gene

Localization for CCDC170 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC170 Gene COMPARTMENTS Subcellular localization image for CCDC170 gene
Compartment Confidence
golgi apparatus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC170 Gene

Pathways & Interactions for CCDC170 Gene

SuperPathways for CCDC170 Gene

No Data Available

Interacting Proteins for CCDC170 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000239374%0d%0a9606.ENSP00000256897%0d%0a
Selected Interacting proteins: Q8IYT3-CC170_HUMAN ENSP00000239374 for CCDC170 Gene via UniProtKB STRING

Gene Ontology (GO) - Biological Process for CCDC170 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC170 Gene

Drugs & Compounds for CCDC170 Gene

No Compound Related Data Available

Transcripts for CCDC170 Gene

Unigene Clusters for CCDC170 Gene

Coiled-coil domain containing 170:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC170

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC170 Gene

No ASD Table

Relevant External Links for CCDC170 Gene

GeneLoc Exon Structure for
CCDC170
ECgene alternative splicing isoforms for
CCDC170

Expression for CCDC170 Gene

mRNA expression in normal human tissues for CCDC170 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC170 Gene

This gene is overexpressed in Ovary (x5.3) and Adrenal Gland (x4.2).

Protein differential expression in normal tissues from HIPED for CCDC170 Gene

This gene is overexpressed in Nasal epithelium (68.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC170 Gene



SOURCE GeneReport for Unigene cluster for CCDC170 Gene Hs.660044

genes like me logo Genes that share expression patterns with CCDC170: view

Protein tissue co-expression partners for CCDC170 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC170 Gene

Orthologs for CCDC170 Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC170 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CCDC170 35
  • 86.65 (n)
  • 83.5 (a)
CCDC170 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC170 35
  • 87.16 (n)
  • 83.62 (a)
CCDC170 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc170 35
  • 78 (n)
  • 70.14 (a)
Ccdc170 16
Ccdc170 36
  • 68 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CCDC170 35
  • 99.16 (n)
  • 98.74 (a)
CCDC170 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc170 35
  • 79.15 (n)
  • 72.62 (a)
oppossum
(Monodelphis domestica)
Mammalia CCDC170 36
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC170 36
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves C6ORF97 35
  • 64.44 (n)
  • 55.62 (a)
CCDC170 36
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC170 36
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc170 35
  • 65.25 (n)
  • 60.19 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc170 35
  • 52.37 (n)
  • 37.9 (a)
ccdc170 36
  • 35 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007734 35
  • 42.06 (n)
  • 28.83 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG43338 35
  • 40.13 (n)
  • 26.59 (a)
CG43338 36
  • 18 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 38 (a)
OneToOne
Species with no ortholog for CCDC170:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC170 Gene

ENSEMBL:
Gene Tree for CCDC170 (if available)
TreeFam:
Gene Tree for CCDC170 (if available)

Paralogs for CCDC170 Gene

No data available for Paralogs for CCDC170 Gene

Variants for CCDC170 Gene

Sequence variations from dbSNP and Humsavar for CCDC170 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs871415 -- 151,545,432(+) CAAAA(A/C)AAAAT intron-variant
rs900194 -- 151,566,603(-) attat(C/T)gaaaa intron-variant
rs900195 -- 151,604,242(-) TACTC(A/G)TTGGG intron-variant
rs900196 -- 151,595,000(-) TATTT(A/C)TCTAA intron-variant
rs903801 -- 151,545,746(-) gaggc(A/G)ggagg intron-variant

Variation tolerance for CCDC170 Gene

Residual Variation Intolerance Score: 98.93% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.66; 93.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC170 Gene

HapMap Linkage Disequilibrium report
CCDC170
Human Gene Mutation Database (HGMD)
CCDC170

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCDC170 Gene

Disorders for CCDC170 Gene

Relevant External Links for CCDC170

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC170
genes like me logo Genes that share disorders with CCDC170: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC170 Gene

Publications for CCDC170 Gene

  1. C6ORF97-ESR1 breast cancer susceptibility locus: influence on progression and survival in breast cancer patients. (PMID: 25370037) Yamamoto-Ibusuki M. … Iwase H. (Eur. J. Hum. Genet. 2014) 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  3. Current evidence on the association between rs3757318 of C6orf97 and breast cancer risk: a meta-analysis. (PMID: 25338983) Hong Y. … Chen W. (Asian Pac. J. Cancer Prev. 2014) 67
  4. Recurrent ESR1-CCDC170 rearrangements in an aggressive subset of oestrogen receptor-positive breast cancers. (PMID: 25099679) Veeraraghavan J. … Wang X.S. (Nat Commun 2014) 67
  5. Association of ESR1 and C6orf97 gene polymorphism with osteoporosis in postmenopausal women. (PMID: 24481879) Luo L. … Xu L. (Mol. Biol. Rep. 2014) 67

Products for CCDC170 Gene

Sources for CCDC170 Gene

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