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Aliases for CCDC17 Gene

Aliases for CCDC17 Gene

  • Coiled-Coil Domain Containing 17 2 3

External Ids for CCDC17 Gene

Previous GeneCards Identifiers for CCDC17 Gene

  • GC01M045755
  • GC01M045858
  • GC01M046086
  • GC01M044196

Summaries for CCDC17 Gene

GeneCards Summary for CCDC17 Gene

CCDC17 (Coiled-Coil Domain Containing 17) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC17 Gene

Genomics for CCDC17 Gene

Regulatory Elements for CCDC17 Gene

Genomic Location for CCDC17 Gene

Start:
45,620,044 bp from pter
End:
45,624,765 bp from pter
Size:
4,722 bases
Orientation:
Minus strand

Genomic View for CCDC17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC17 Gene

Proteins for CCDC17 Gene

  • Protein details for CCDC17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96LX7-CCD17_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 17
    Protein Accession:
    Q96LX7
    Secondary Accessions:
    • A1A4Y7
    • B4DNX7
    • B4E1Q5
    • C9J8L2
    • Q0P683
    • Q5T629

    Protein attributes for CCDC17 Gene

    Size:
    622 amino acids
    Molecular mass:
    67721 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAB71539.1; Type=Miscellaneous discrepancy; Note=Incompletely spliced mRNA.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC17 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC17 Gene

Proteomics data for CCDC17 Gene at MOPED

Post-translational modifications for CCDC17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC17 Gene

No data available for DME Specific Peptides for CCDC17 Gene

Domains for CCDC17 Gene

Protein Domains for CCDC17 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC17: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC17 Gene

Function for CCDC17 Gene

Gene Ontology (GO) - Molecular Function for CCDC17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC17: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC17 Gene

Localization for CCDC17 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC17 Gene COMPARTMENTS Subcellular localization image for CCDC17 gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC17 Gene

Pathways for CCDC17 Gene

SuperPathways for CCDC17 Gene

No Data Available

Interacting Proteins for CCDC17 Gene

Gene Ontology (GO) - Biological Process for CCDC17 Gene

None

No data available for Pathways by source for CCDC17 Gene

Transcripts for CCDC17 Gene

Unigene Clusters for CCDC17 Gene

Coiled-coil domain containing 17:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC17 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b
SP1: -
SP2: -
SP3: - -
SP4:

Relevant External Links for CCDC17 Gene

GeneLoc Exon Structure for
CCDC17
ECgene alternative splicing isoforms for
CCDC17

Expression for CCDC17 Gene

mRNA expression in normal human tissues for CCDC17 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC17 Gene

This gene is overexpressed in Fallopian Tube (11.5), Cervix - Endocervix (6.2), Whole Blood (4.5), and Lung (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CCDC17 Gene

SOURCE GeneReport for Unigene cluster for CCDC17 Gene Hs.18912

genes like me logo Genes that share expressions with CCDC17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC17 Gene

Orthologs for CCDC17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC17 35
  • 99.14 (n)
  • 98.87 (a)
CCDC17 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC17 35
  • 80.08 (n)
  • 72.6 (a)
CCDC17 36
  • 70 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC17 35
  • 78.59 (n)
  • 71.85 (a)
CCDC17 36
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc17 35
  • 71.62 (n)
  • 65.59 (a)
Ccdc17 16
Ccdc17 36
  • 64 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC17 36
  • 47 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC17 36
  • 42 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc17 35
  • 71.51 (n)
  • 65.07 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC17 36
  • 42 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CR854855.2 36
  • 27 (a)
OneToOne
Species with no ortholog for CCDC17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC17 Gene

ENSEMBL:
Gene Tree for CCDC17 (if available)
TreeFam:
Gene Tree for CCDC17 (if available)

Paralogs for CCDC17 Gene

No data available for Paralogs for CCDC17 Gene

Variants for CCDC17 Gene

Sequence variations from dbSNP and Humsavar for CCDC17 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1547925 -- 45,619,684(+) AGTCA(C/T)GATGT downstream-variant-500B
rs2275084 -- 45,619,967(+) GAATT(G/T)AAAGT downstream-variant-500B
rs2275085 -- 45,620,180(+) CTAGA(C/T)CCAAT utr-variant-3-prime, nc-transcript-variant
rs2275086 -- 45,620,207(+) GTAAA(C/G)CTGTA utr-variant-3-prime, nc-transcript-variant
rs2297654 - 45,620,764(+) ATTGA(C/T)CTCTG reference, missense, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC17 Gene

Variant ID Type Subtype PubMed ID
nsv829726 CNV Loss 17160897
nsv871928 CNV Gain 21882294
nsv822509 CNV Loss 20364138

Relevant External Links for CCDC17 Gene

HapMap Linkage Disequilibrium report
CCDC17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC17 Gene

Disorders for CCDC17 Gene

No disorders were found for CCDC17 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC17 Gene

Publications for CCDC17 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for CCDC17 Gene

Sources for CCDC17 Gene

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