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Aliases for CCDC169-SOHLH2 Gene

Aliases for CCDC169-SOHLH2 Gene

  • CCDC169-SOHLH2 Readthrough 2 3
  • C13orf38-SOHLH2 Readthrough 2
  • CCDC169-SOHLH2 Protein 3
  • C13orf38-SOHLH2 3

External Ids for CCDC169-SOHLH2 Gene

Previous HGNC Symbols for CCDC169-SOHLH2 Gene

  • C13orf38-SOHLH2

Previous GeneCards Identifiers for CCDC169-SOHLH2 Gene

  • GC13U900863
  • GC13M036745

Summaries for CCDC169-SOHLH2 Gene

Entrez Gene Summary for CCDC169-SOHLH2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring C13orf38 (chromosome 13 open reading frame 38) and SOHLH2 (spermatogenesis and oogenesis specific basic helix-loop-helix 2) genes. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Nov 2010]

GeneCards Summary for CCDC169-SOHLH2 Gene

CCDC169-SOHLH2 (CCDC169-SOHLH2 Readthrough) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC169-SOHLH2 Gene

Genomics for CCDC169-SOHLH2 Gene

Genomic Location for CCDC169-SOHLH2 Gene

Start:
36,168,208 bp from pter
End:
36,297,855 bp from pter
Size:
129,648 bases
Orientation:
Minus strand

Genomic View for CCDC169-SOHLH2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC169-SOHLH2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC169-SOHLH2 Gene

No data available for Regulatory Elements for CCDC169-SOHLH2 Gene

Proteins for CCDC169-SOHLH2 Gene

Post-translational modifications for CCDC169-SOHLH2 Gene

No Post-translational modifications

Other Protein References for CCDC169-SOHLH2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC169-SOHLH2 Gene

Domains for CCDC169-SOHLH2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC169-SOHLH2 Gene

Function for CCDC169-SOHLH2 Gene

Gene Ontology (GO) - Molecular Function for CCDC169-SOHLH2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0046983 protein dimerization activity --
genes like me logo Genes that share ontologies with CCDC169-SOHLH2: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC169-SOHLH2 Gene

Localization for CCDC169-SOHLH2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC169-SOHLH2 Gene

Pathways for CCDC169-SOHLH2 Gene

SuperPathways for CCDC169-SOHLH2 Gene

No Data Available

Interacting Proteins for CCDC169-SOHLH2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000421868%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000421868 for CCDC169-SOHLH2 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for CCDC169-SOHLH2 Gene

None

No data available for Pathways by source for CCDC169-SOHLH2 Gene

Transcripts for CCDC169-SOHLH2 Gene

mRNA/cDNA for CCDC169-SOHLH2 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC169-SOHLH2 Gene

No ASD Table

Relevant External Links for CCDC169-SOHLH2 Gene

GeneLoc Exon Structure for
CCDC169-SOHLH2
ECgene alternative splicing isoforms for
CCDC169-SOHLH2

Expression for CCDC169-SOHLH2 Gene

mRNA expression in normal human tissues for CCDC169-SOHLH2 Gene

genes like me logo Genes that share expressions with CCDC169-SOHLH2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CCDC169-SOHLH2 Gene

Orthologs for CCDC169-SOHLH2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CCDC169-SOHLH2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 97 (a)
OneToMany
SOHLH2 35
  • 98.8 (n)
  • 97.21 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 72 (a)
OneToMany
SOHLH2 35
  • 80.99 (n)
  • 72.33 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 72 (a)
OneToMany
SOHLH2 35
  • 82.28 (n)
  • 73.66 (a)
mouse
(Mus musculus)
Mammalia Sohlh2 35
  • 68.65 (n)
  • 52.72 (a)
Sohlh2 36
  • 46 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 59 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 53 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Sohlh2 35
  • 70.45 (n)
  • 56.68 (a)
Species with no ortholog for CCDC169-SOHLH2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC169-SOHLH2 Gene

ENSEMBL:
Gene Tree for CCDC169-SOHLH2 (if available)
TreeFam:
Gene Tree for CCDC169-SOHLH2 (if available)

Paralogs for CCDC169-SOHLH2 Gene

No data available for Paralogs for CCDC169-SOHLH2 Gene

Variants for CCDC169-SOHLH2 Gene

Structural Variations from Database of Genomic Variants (DGV) for CCDC169-SOHLH2 Gene

Variant ID Type Subtype PubMed ID
nsv899992 CNV Loss 21882294
nsv899993 CNV Gain 21882294
esv27520 CNV Gain 19812545
esv2666917 CNV Deletion 23128226
esv2747263 CNV Deletion 23290073
esv2095309 CNV Deletion 18987734
esv2747265 CNV Deletion 23290073
esv2747266 CNV Deletion 23290073
esv2747267 CNV Deletion 23290073
esv1749604 CNV Deletion 17803354
nsv525432 CNV Loss 19592680
nsv515635 CNV Gain+Loss 19592680
esv2671981 CNV Deletion 23128226

Relevant External Links for CCDC169-SOHLH2 Gene

HapMap Linkage Disequilibrium report
CCDC169-SOHLH2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for CCDC169-SOHLH2 Gene

Disorders for CCDC169-SOHLH2 Gene

No disorders were found for CCDC169-SOHLH2 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC169-SOHLH2 Gene

Publications for CCDC169-SOHLH2 Gene

  1. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PMID: 20967262) Prakash T. … Taylor T.D. (PLoS ONE 2010) 3
  2. Global identification of modular cullin-RING ligase substrates. (PMID: 21963094) Emanuele M.J. … Elledge S.J. (Cell 2011) 3
  3. The genetic architecture of economic and political preferences. (PMID: 22566634) Benjamin D.J. … Visscher P.M. (Proc. Natl. Acad. Sci. U.S.A. 2012) 3

Products for CCDC169-SOHLH2 Gene

Sources for CCDC169-SOHLH2 Gene

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