CCDC169 Gene
protein-coding GIFtS: 32
GCID: GC13M036802
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coiled-coil domain containing 169(Previous name: chromosome 13 open reading frame 38 )
(Previous symbol: C13orf38)
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Aliases
for CCDC169 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Coiled-Coil Domain Containing 1691 2 | | C13orf381 2 3 | | RP11-251J8.11 2 | | LOC7285911 | | Chromosome 13 Open Reading Frame 381 | | Coiled-Coil Domain-Containing Protein 1692 |
Export aliases for CCDC169 gene to outside databases |
Summaries
for CCDC169 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for CCDC169 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000013.10 NC_018924.1 NT_024524.14
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for CCDC169
Other transcription factors
Search SABiosciences Chromatin IP Primers for CCDC169
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC169 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 13q13.3 Ensembl cytogenetic band: 13q13.3 HGNC cytogenetic band: 13q13.3CCDC169 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 13 GeneLoc Exon Structure GeneLoc location for GC13M036802: view genomic region
(about GC identifiers)
Start:
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36,801,182 bp from pter |
End:
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36,871,992 bp from pter |
Size:
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70,811 bases |
Orientation:
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minus strand |
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Proteins
for CCDC169 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CC169_HUMAN, A6NNP5 (See
protein sequence)Recommended Name: Coiled-coil domain-containing protein 169 Size: 214 amino acids; 25253 Da
Secondary accessions: A6NC13 A6NCT2 B7ZW45 B7ZW49 B9EJF2 Q9H1T4 Q9H1T5Alternative splicing: 6 isoforms: A6NNP5-1 A6NNP5-2 A6NNP5-3 A6NNP5-4 A6NNP5-5 A6NNP5-6 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for CCDC169: NX_A6NNP5
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_A6NNP5
CCDC169 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (7 alternative transcripts):
NP_001138453.1 NP_001138454.1 NP_001138455.1 NP_001138456.1 NP_001138457.1 NP_001138458.1 NP_001185837.1
ENSEMBL proteins: ENSP00000420862 ENSP00000425252 ENSP00000426174 ENSP00000239860 ENSP00000369193 ENSP00000427495 ENSP00000369191 ENSP00000239859
Human Recombinant Protein Products for CCDC169:
CCDC169 Antibody Products:
Assay Products for CCDC169: |
Protein
Domains /
Families
for CCDC169 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: A6NNP5 UniProtKB/Swiss-Prot: CC169_HUMAN, A6NNP5Similarity: Belongs to the CCDC169 family |
Function
for CCDC169 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC169 (see all 9)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC169 (see all 6)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for CCDC169 | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCDC169 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC169 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC169 |
|
Pathways & Interactions
for CCDC169 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC169
|
Drugs & Compounds
for CCDC169 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CCDC169
Search CenterWatch for drugs/clinical trials and news about CCDC169 / CC169
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Transcripts
for CCDC169 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CCDC169 gene (7 alternative transcripts): NM_001144981.2 NM_001144982.2 NM_001144983.2 NM_001144984.2 NM_001144985.2 NM_001144986.2 NM_001198908.1 Unigene Clusters for CCDC169: Coiled-coil domain containing 169 Hs.656745 [show with all ESTs], Hs.730899 [show with all ESTs]Unigene Representative Sequences: AK023568, BC01394413 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000479850(uc010tem.2 uc010tek.2 uc010tej.2 uc010tel.2)
ENST00000506800 ENST00000491049 ENST00000503173 ENST00000239860 ENST00000379864
ENST00000510088(uc010abm.3 uc010abo.3 uc010abn.3) ENST00000379862
ENST00000239859 ENST00000471781 ENST00000486683 ENST00000477250(uc001uvl.4)
ENST00000485600
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC169 (see all 9)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC169 (see all 6)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for CCDC169 | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCDC169 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC169 |
Additional cDNA sequence: AK131058.1 AK308999.1 BC013944.1 BC037403.1 BC146975.1 BC171867.1 BC171872.1 BC171874.1 BC171880.1 BC171881.1 BC171882.1 BC171884.1 11 DOTS entries: DT.40196831 DT.410336 DT.75121513 DT.92415177 DT.95163651 DT.95163649 DT.100692764 DT.100778418 DT.120792849 DT.95163650 DT.410334
GeneLoc Exon Structure
|
Expression
for CCDC169 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CCDC169 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TATTTCTTTA
About this image
See CCDC169 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCDC169
SOURCE GeneReport for Unigene clusters: Hs.656745 Hs.730899
SABiosciences Custom PCR Arrays for CCDC169
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC169
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat CCDC169 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC169 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC169 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC169 |
Orthologs
for CCDC169 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for CCDC169 gene from 3/6 species (see all 6) About this table
ENSEMBL Gene Tree for CCDC169 (if available)
TreeFam Gene Tree for CCDC169 (if available) |
Paralogs
for CCDC169 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for CCDC169 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 13 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for CCDC169 (36801182 - 36871992 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CCDC169: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCDC169 |
|
Disorders
/ Diseases
for CCDC169 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for CCDC169 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CCDC169 gene integrated from 9 sources:
(articles sorted by number of sources associating them with CCDC169) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The DNA sequence and analysis of human chromosome 13. (PubMed id 15057823)2 Dunham A.... Ross M.T. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (2001)
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External Searches for CCDC169 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
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Genome Databases showing CCDC169 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CCDC169 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CCDC169 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for CCDC169 | Pharmacogenomics, SNPs, Pathways |
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About This Section
| Patent Information for CCDC169 gene:
Search GeneIP for patents involving CCDC169
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CCDC169 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
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| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for CCDC169 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CCDC169 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC169 | | | OriGene Protein Over-expression Lysate for CCDC169 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for CCDC169 | | OriGene 3'-UTR Clone for CCDC169 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC169 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC169 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for CCDC169 | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CCDC169 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCDC169 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC169 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC169 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC169 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC169 |
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 |  |  |  | |
| | | | Search Tocris compounds for CCDC169 |
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 | | | CCDC169 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC169 |
|  |  |  |  | | | | ThermoFisher Antibodies for CCDC169 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC169 |
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