Aliases for CCDC169 Gene
Aliases for CCDC169 Gene
External Ids for CCDC169 Gene
- HGNC: 34361
- Entrez Gene: 728591
- Ensembl: ENSG00000242715
- UniProtKB: A6NNP5
Previous HGNC Symbols for CCDC169 Gene
- C13orf38
Previous GeneCards Identifiers for CCDC169 Gene
- GC13M036802
Summaries for CCDC169 Gene
GeneCards Summary for CCDC169 Gene
CCDC169 (Coiled-Coil Domain Containing 169) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC169 Gene
Genomics for CCDC169 Gene
Regulatory Elements for CCDC169 Gene
Enhancers for CCDC169 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH13G036343 | 1.3 | ENCODE dbSUPER | 13.3 | -47.7 | -47710 | 4.1 | HDGF PKNOX1 FOXA2 CREB3L1 SIN3A ARID4B DMAP1 FEZF1 ZNF2 YY1 | SOHLH2 SPG20 CCDC169 RFXAP SPG20-AS1 CCDC169-SOHLH2 |
| GH13G036154 | 1.3 | FANTOM5 Ensembl ENCODE dbSUPER | 11.2 | +142.8 | 142839 | 1.8 | POLR2A SMARCA4 PRDM4 | DCLK1 CCDC169 SOHLH2 SPG20 |
| GH13G036130 | 1.1 | ENCODE dbSUPER | 12.4 | +166.2 | 166205 | 2.7 | ZSCAN4 SIN3A ZNF121 GLIS2 ZNF366 FOS EGR2 ZNF263 SP3 ZNF398 | SOHLH2 CCDC169 DCLK1 NMTRQ-TTG10-1 |
| GH13G036296 | 1 | ENCODE | 12.8 | -1.2 | -1185 | 4.3 | PKNOX1 ATF1 FEZF1 GLI4 BRCA1 ZNF2 GLIS2 FOS KLF13 SP3 | SOHLH2 CCDC169 CCDC169-SOHLH2 SPG20-AS1 |
| GH13G036156 | 0.9 | ENCODE dbSUPER | 11.3 | +139.7 | 139741 | 3.0 | CEBPB KLF17 FEZF1 EP300 ATF2 PRDM6 JUND MAFF ZNF366 SMARCA4 | DCLK1 CCDC169 SOHLH2 RNU6-71P |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CCDC169 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CCDC169 Gene
- Chromosome:
- 13
- Start:
- 36,222,008 bp from pter
- End:
- 36,297,855 bp from pter
- Size:
- 75,848 bases
- Orientation:
- Minus strand
Genomic View for CCDC169 Gene
Genes around CCDC169 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q13.3 by Ensembl
- 13q13.3 by Entrez Gene
- 13q13.3 by HGNC
CCDC169 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CCDC169 Gene
Proteins for CCDC169 Gene
-
Protein details for CCDC169 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A6NNP5-CC169_HUMAN
- Recommended name:
- Coiled-coil domain-containing protein 169
- Protein Accession:
- A6NNP5
- A6NC13
- A6NCT2
- B7ZW45
- B7ZW49
- B9EJF2
- Q9H1T4
- Q9H1T5
Protein attributes for CCDC169 Gene
- Size:
- 214 amino acids
- Molecular mass:
- 25253 Da
- Quaternary structure:
- No Data Available
Protein Expression for CCDC169 Gene
Post-translational modifications for CCDC169 Gene
Other Protein References for CCDC169 Gene
Antibody Products
- Search GeneTex for Antibodies for CCDC169
Protein Products
-
OriGene Purified Proteins for CCDC169
- Search Origene for MassSpec and Protein Over-expression Lysates for CCDC169
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- Search GeneTex for Proteins for CCDC169
Assay Products
No data available for DME Specific Peptides for CCDC169 Gene
Domains & Families for CCDC169 Gene
Suggested Antigen Peptide Sequences for CCDC169 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
A6NNP5- Family:
-
- Belongs to the CCDC169 family.
No data available for Gene Families for CCDC169 Gene
Function for CCDC169 Gene
Phenotypes for CCDC169 Gene
- GenomeRNAi human phenotypes for CCDC169:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC169
-
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CRISPR Products
-
OriGene CRISPR knockouts for CCDC169
-
Santa Cruz Biotechnology (SCBT) CRISPR for CCDC169
- GenScript: Design CRISPR guide RNA sequences for CCDC169
miRNA for CCDC169 Gene
- miRTarBase miRNAs that target CCDC169
-
- hsa-mir-129-5p (MIRT526258)
- hsa-mir-6885-3p (MIRT526259)
- hsa-mir-4639-5p (MIRT526260)
- hsa-mir-3941 (MIRT526261)
- hsa-mir-8067 (MIRT526262)
- hsa-mir-6508-5p (MIRT526263)
- hsa-mir-216b-3p (MIRT526264)
- hsa-mir-603 (MIRT526265)
- hsa-mir-362-3p (MIRT526266)
- hsa-mir-329-3p (MIRT526267)
- hsa-mir-8485 (MIRT526268)
- hsa-mir-708-3p (MIRT526269)
- hsa-mir-212-3p (MIRT526270)
- hsa-mir-132-3p (MIRT526271)
- hsa-mir-3121-3p (MIRT526272)
miRNA Products
- Search ViGene Biosciences for CCDC169
Inhibitory RNA Products
- Origene siRNA, shRNA, and RNAi products in human, mouse, rat for CCDC169
- Browse OriGene Inhibitory RNA Products For CCDC169
Clone Products
-
OriGene ORF clones in human for CCDC169
- RG231278
- RC231278L2
- RC231278L1
- RC231278
- RG230783
- RC230783L2
- RC230783L1
- RC230783
- RG227173
- RC227173L2
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- RG227163
- RC227163L2
- RC227163L1
- RC227163
- RG227143
- RC227143L2
- RC227143L1
- RC227143
- RG227122
- RC227122L2
- RC227122L1
- RC227122
- RG227060
- RC227060L2
- RC227060L1
- RC227060
- RG227796
- RC227796L2
- RC227796L1
- RC227796
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CCDC169
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC169
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for CCDC169
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC169 Gene
Localization for CCDC169 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC169 Gene
Transcripts for CCDC169 Gene
mRNA/cDNA for CCDC169 Gene
- (7) REFSEQ mRNAs :
- (13) Additional mRNA sequences :
- (13) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CCDC169 Gene
CRISPR Products
-
OriGene CRISPR knockouts for CCDC169
-
Santa Cruz Biotechnology (SCBT) CRISPR for CCDC169
- GenScript: Design CRISPR guide RNA sequences for CCDC169
miRNA Products
- Search ViGene Biosciences for CCDC169
Inhibitory RNA Products
- Origene siRNA, shRNA, and RNAi products in human, mouse, rat for CCDC169
- Browse OriGene Inhibitory RNA Products For CCDC169
Clone Products
-
OriGene ORF clones in human for CCDC169
- RG231278
- RC231278L2
- RC231278L1
- RC231278
- RG230783
- RC230783L2
- RC230783L1
- RC230783
- RG227173
- RC227173L2
- RC227173L1
- RC227173
- RG227163
- RC227163L2
- RC227163L1
- RC227163
- RG227143
- RC227143L2
- RC227143L1
- RC227143
- RG227122
- RC227122L2
- RC227122L1
- RC227122
- RG227060
- RC227060L2
- RC227060L1
- RC227060
- RG227796
- RC227796L2
- RC227796L1
- RC227796
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CCDC169
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC169
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CCDC169 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Adipose (Muscoskeletal System)
- Mesenchymal Stem Cells Subcutaneous White Adipose
-
Mesenchymal Stem Cells
- Mesenchymal Stem Cells Subcutaneous White Adipose
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for CCDC169 Gene
This gene is overexpressed in Testis (x24.7).
This gene is overexpressed in Adipocyte (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC169 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of CCDC169 Gene:
CCDC169SOURCE GeneReport for Unigene cluster for CCDC169 Gene:
Hs.656745Primer Products
-
OriGene qPCR primer pairs for CCDC169
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC169 Gene
Orthologs for CCDC169 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| dog (Canis familiaris) |
Mammalia | CCDC169 34 35 |
|
||
| mouse (Mus musculus) |
Mammalia | Ccdc169 34 16 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Ccdc169 34 |
|
||
| cow (Bos Taurus) |
Mammalia | CCDC169 35 |
|
OneToOne | |
| oppossum (Monodelphis domestica) |
Mammalia | CCDC169 35 |
|
OneToOne | |
| chicken (Gallus gallus) |
Aves | CCDC169 34 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | CCDC169 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | ccdc169 34 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | ccdc169 34 35 |
|
- Species where no ortholog for CCDC169 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chimpanzee (Pan troglodytes)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Paralogs for CCDC169 Gene
(1) SIMAP similar genes for CCDC169 Gene using alignment to 2 proteins:
No data available for Paralogs for CCDC169 Gene
Variants for CCDC169 Gene
| SNP ID | Clin | Chr 13 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000034709 | -- | 36,256,715(+) | CCACC(A/G)GCCTG | intron-variant | |
| rs1000039585 | -- | 36,298,659(+) | CTTCC(A/C)GGTCA | upstream-variant-2KB | |
| rs1000066311 | -- | 36,294,868(+) | ATCTA(C/T)AGATA | intron-variant | |
| rs1000078128 | -- | 36,244,225(+) | AAACA(G/T)TTCCC | intron-variant | |
| rs1000116850 | -- | 36,294,639(+) | TTATT(A/C/T)GGCCG | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv101e215 | CNV | deletion | 23714750 |
| dgv949n106 | CNV | deletion | 24896259 |
| esv1749604 | CNV | deletion | 17803354 |
| esv2095309 | CNV | deletion | 18987734 |
| esv2666917 | CNV | deletion | 23128226 |
| esv2671981 | CNV | deletion | 23128226 |
| esv2747263 | CNV | deletion | 23290073 |
| esv2747265 | CNV | deletion | 23290073 |
| esv2747266 | CNV | deletion | 23290073 |
| esv2747267 | CNV | deletion | 23290073 |
| esv3172209 | CNV | deletion | 24192839 |
| esv3550316 | CNV | deletion | 23714750 |
| esv3631777 | CNV | loss | 21293372 |
| esv3631778 | CNV | loss | 21293372 |
| esv3631780 | CNV | loss | 21293372 |
| nsv1070583 | CNV | deletion | 25765185 |
| nsv1138215 | CNV | deletion | 24896259 |
| nsv1149953 | CNV | deletion | 26484159 |
| nsv515635 | CNV | gain+loss | 19592680 |
| nsv525432 | CNV | loss | 19592680 |
Gene Damage Index Score:
4.66;
65.82% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for CCDC169 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CCDC169
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC169 Gene
Disorders for CCDC169 Gene
Relevant External Links for CCDC169
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CCDC169
No disorders were found for CCDC169 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC169 Gene
Publications for CCDC169 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
- The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
- The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
Products for CCDC169 Gene
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- OriGene Purified Proteins for CCDC169
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- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CCDC169
- Browse OriGene Inhibitory RNA Products For CCDC169
- OriGene qPCR primer pairs for CCDC169
- OriGene CRISPR knockouts for CCDC169
- OriGene ORF clones in human for CCDC169
- RC227796
- RC227796L1
- RC227796L2
- RG227796
- RC227060
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- RG227060
- RC227122
- RC227122L1
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- RC227173L1
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Novus Biologicals
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- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC169
- VectorBuilder custom plasmid, inducible vectors for CCDC169
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC169
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CCDC169 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer



