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Aliases for CCDC169 Gene

Aliases for CCDC169 Gene

  • Coiled-Coil Domain Containing 169 2 3
  • C13orf38 3 4
  • Coiled-Coil Domain-Containing Protein 169 3
  • Chromosome 13 Open Reading Frame 38 2
  • RP11-251J8.1 3

External Ids for CCDC169 Gene

Previous Symbols for CCDC169 Gene

  • C13orf38

Summaries for CCDC169 Gene

GeneCards Summary for CCDC169 Gene

CCDC169 (Coiled-Coil Domain Containing 169) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC169 Gene

Genomics for CCDC169 Gene

Genomic Location for CCDC169 Gene

Start:
36,222,008 bp from pter
End:
36,297,855 bp from pter
Size:
75,848 bases
Orientation:
Minus strand

Genomic View for CCDC169 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC169 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC169 Gene

No data available for Regulatory Elements for CCDC169 Gene

Proteins for CCDC169 Gene

  • Protein details for CCDC169 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NNP5-CC169_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 169
    Protein Accession:
    A6NNP5
    Secondary Accessions:
    • A6NC13
    • A6NCT2
    • B7ZW45
    • B7ZW49
    • B9EJF2
    • Q9H1T4
    • Q9H1T5

    Protein attributes for CCDC169 Gene

    Size:
    214 amino acids
    Molecular mass:
    25253 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC169 Gene

neXtProt entry for CCDC169 Gene

Proteomics data for CCDC169 Gene at MOPED

Post-translational modifications for CCDC169 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC169 Gene

Domains for CCDC169 Gene

Protein Domains for CCDC169 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

CC169_HUMAN
Family:
  • Belongs to the CCDC169 family.:
    • A6NNP5
genes like me logo Genes that share domains with CCDC169: view

No data available for Gene Families for CCDC169 Gene

Function for CCDC169 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC169 Gene

Localization for CCDC169 Gene

No data available for Gene Ontology (GO) - Cellular Components for CCDC169 Gene

Pathways for CCDC169 Gene

SuperPathways for CCDC169 Gene

No Data Available

Interacting Proteins for CCDC169 Gene

Gene Ontology (GO) - Biological Process for CCDC169 Gene

None

No data available for Pathways by source for CCDC169 Gene

Transcripts for CCDC169 Gene

mRNA/cDNA for CCDC169 Gene

(7) REFSEQ mRNAs :
(13) Additional mRNA sequences :
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC169 Gene

Coiled-coil domain containing 169:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC169 Gene

No ASD Table

Relevant External Links for CCDC169 Gene

GeneLoc Exon Structure for
CCDC169
ECgene alternative splicing isoforms for
CCDC169

Expression for CCDC169 Gene

mRNA expression in normal human tissues for CCDC169 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCDC169 Gene

This gene is overexpressed in Testis (24.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC169 Gene

SOURCE GeneReport for Unigene cluster for CCDC169 Gene Hs.656745

genes like me logo Genes that share expressions with CCDC169: view

Orthologs for CCDC169 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC169 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CCDC169 37
  • 57 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC169 36
  • 84.11 (n)
  • 71.96 (a)
CCDC169 37
  • 64 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc169 36
  • 77.26 (n)
  • 71.03 (a)
Ccdc169 16
Ccdc169 37
  • 63 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC169 37
  • 45 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc169 36
  • 76.32 (n)
  • 70.56 (a)
chicken
(Gallus gallus)
Aves CCDC169 36
  • 62.12 (n)
  • 47.98 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC169 37
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc169 36
  • 61.58 (n)
  • 49.47 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc169 36
  • 52.02 (n)
  • 39.39 (a)
ccdc169 37
  • 37 (a)
OneToOne
Species with no ortholog for CCDC169:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC169 Gene

ENSEMBL:
Gene Tree for CCDC169 (if available)
TreeFam:
Gene Tree for CCDC169 (if available)

Paralogs for CCDC169 Gene

Selected SIMAP similar genes for CCDC169 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC169: view

No data available for Paralogs for CCDC169 Gene

Variants for CCDC169 Gene

Sequence variations from dbSNP and Humsavar for CCDC169 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
VAR_057811 -

Structural Variations from Database of Genomic Variants (DGV) for CCDC169 Gene

Variant ID Type Subtype PubMed ID
nsv899993 CNV Gain 21882294
esv2666917 CNV Deletion 23128226
esv2747263 CNV Deletion 23290073
esv2095309 CNV Deletion 18987734
esv2747265 CNV Deletion 23290073
esv2747266 CNV Deletion 23290073
esv2747267 CNV Deletion 23290073
esv1749604 CNV Deletion 17803354
nsv525432 CNV Loss 19592680
nsv515635 CNV Gain+Loss 19592680
esv2671981 CNV Deletion 23128226

Relevant External Links for CCDC169 Gene

HapMap Linkage Disequilibrium report
CCDC169

Disorders for CCDC169 Gene

No disorders were found for CCDC169 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC169 Gene

Publications for CCDC169 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CCDC169 Gene

Sources for CCDC169 Gene

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