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CCDC167 Gene(Protein Coding)

Coiled-Coil Domain Containing 167

GCID:
GC06M037482
GIFtS:
41
Genes Participants
UDN Logo

Aliases for CCDC167 Gene

Aliases for CCDC167 Gene

  • Coiled-Coil Domain Containing 167 2 3 5
  • C6orf129 3 4
  • Transmembrane And Coiled-Coil Domain-Containing Protein C6orf129 3
  • Coiled-Coil Domain-Containing Protein 167 3
  • Chromosome 6 Open Reading Frame 129 2
  • HSPC265 3

External Ids for CCDC167 Gene

Previous HGNC Symbols for CCDC167 Gene

  • C6orf129

Previous GeneCards Identifiers for CCDC167 Gene

  • GC06M037450

Summaries for CCDC167 Gene

GeneCards Summary for CCDC167 Gene

CCDC167 (Coiled-Coil Domain Containing 167) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC167 Gene

Genomics for CCDC167 Gene

Products:

  1. Regulatory Element

Regulatory Elements for CCDC167 Gene

Enhancers for CCDC167 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G037547 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.1 -51.7 -51739 9.3 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 SIN3A YY1 ZNF143 ZNF207 FOS LINC02520 CCDC167 CMTR1 ENSG00000229559 MIR4462
GH06G037559 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -63.0 -63038 7.9 HDGF ZNF493 ZNF2 ZNF121 ZNF302 ZNF143 FOS ZNF202 NFYC REST CMTR1 CCDC167 LINC02520 MDGA1 TMEM217 ENSG00000279942 MIR4462
GH06G037556 1.3 FANTOM5 ENCODE dbSUPER 11.1 -57.2 -57202 1.0 HDGF TBP BACH1 EBF1 RELA POLR2A EED FOS RELB IKZF2 LINC02520 CCDC167 MIR4462 ENSG00000279942
GH06G037535 1.1 Ensembl dbSUPER 12 -36.2 -36177 1.0 HDAC1 PKNOX1 KLF17 RAD21 TCF12 GLIS2 GATA2 EGR2 ZNF654 ZEB2 LINC02520 CCDC167 GC06M037737 ENSG00000227920
GH06G037567 0.9 dbSUPER 10.4 -68.3 -68266 1.0 HDAC1 KLF17 RAD21 ZNF335 TCF12 GLIS2 GATA2 EGR2 ZNF654 ZEB2 CCDC167 MDGA1 ENSG00000279942 GC06M037868
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC167 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC167 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000196405 124 1201 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143

Genomic Location for CCDC167 Gene

Chromosome:
6
Start:
37,482,920 bp from pter
End:
37,499,924 bp from pter
Size:
17,005 bases
Orientation:
Minus strand

Genomic View for CCDC167 Gene

Genes around CCDC167 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC167 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC167 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCDC167 Gene

Proteins for CCDC167 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CCDC167 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9P0B6-CC167_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 167
    Protein Accession:
    Q9P0B6
    Secondary Accessions:
    • Q5T7F7
    • Q9BTQ9

    Protein attributes for CCDC167 Gene

    Size:
    97 amino acids
    Molecular mass:
    11459 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAF28943.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAH03515.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for CCDC167 Gene

Protein Expression for CCDC167 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CCDC167 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC167 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC167 Gene

Domains & Families for CCDC167 Gene

Protein Domains for CCDC167 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC167 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC167: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC167 Gene

Function for CCDC167 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for CCDC167 Gene

GenomeRNAi human phenotypes for CCDC167:
genes like me logo Genes that share phenotypes with CCDC167: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC167 Gene

Localization for CCDC167 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC167 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC167 gene
Compartment Confidence
cytosol 3
cytoskeleton 2
nucleus 2
extracellular 1
mitochondrion 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for CCDC167 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC167: view

Pathways & Interactions for CCDC167 Gene

SuperPathways for CCDC167 Gene

PathCards logo More details on SuperPathways for CCDC167
No Data Available

Interacting Proteins for CCDC167 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000362507%0d%0a9606.ENSP00000257262%0d%0a
Selected Interacting proteins: ENSP00000362507 Q9P0B6-CC167_HUMAN for CCDC167 Gene via STRING IID

Gene Ontology (GO) - Biological Process for CCDC167 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC167 Gene

Drugs & Compounds for CCDC167 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCDC167 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CCDC167 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(94) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC167 Gene

Coiled-coil domain containing 167:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC167 Gene

No ASD Table

Relevant External Links for CCDC167 Gene

GeneLoc Exon Structure for
CCDC167
ECgene alternative splicing isoforms for
CCDC167

Expression for CCDC167 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC167 Gene

mRNA expression in normal human tissues for CCDC167 Gene
mRNA expression by GTEx for CCDC167 Gene

Protein differential expression in normal tissues from HIPED for CCDC167 Gene

This gene is overexpressed in Bone (45.7) and Breast (18.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CCDC167 Gene



Protein tissue co-expression partners for CCDC167 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC167 Gene:

CCDC167

SOURCE GeneReport for Unigene cluster for CCDC167 Gene:

Hs.284207

Evidence on tissue expression from TISSUES for CCDC167 Gene

  • Nervous system(4.2)
  • Blood(4)
genes like me logo Genes that share expression patterns with CCDC167: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC167 Gene

Orthologs for CCDC167 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC167 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia CCDC167 34 35
  • 99.66 (n)
cow
(Bos Taurus)
 Mammalia CCDC167 34 35
  • 88.32 (n)
-- 35
  • 83 (a)
 OneToMany
dog
(Canis familiaris)
 Mammalia CCDC167 34 35
  • 87.97 (n)
rat
(Rattus norvegicus)
 Mammalia Ccdc167 34
  • 83.16 (n)
mouse
(Mus musculus)
 Mammalia Ccdc167 34 16 35
  • 81.79 (n)
oppossum
(Monodelphis domestica)
 Mammalia CCDC167 35
  • 63 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves CCDC167 34 35
  • 65.25 (n)
lizard
(Anolis carolinensis)
 Reptilia CCDC167 35
  • 53 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia ccdc167 34
  • 65.98 (n)
zebrafish
(Danio rerio)
 Actinopterygii CCDC167 35
  • 38 (a)
 OneToOne
Species where no ortholog for CCDC167 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC167 Gene

ENSEMBL:
Gene Tree for CCDC167 (if available)
TreeFam:
Gene Tree for CCDC167 (if available)

Paralogs for CCDC167 Gene

No data available for Paralogs for CCDC167 Gene

Variants for CCDC167 Gene

Sequence variations from dbSNP and Humsavar for CCDC167 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000146614 -- 37,493,636(+) CTCTG(A/C/T)GTGCT intron-variant
rs1000156841 -- 37,483,137(+) TCCTG(A/T)TCAAG downstream-variant-500B, utr-variant-3-prime
rs1000217259 -- 37,495,084(+) CGTGA(A/G)CCACT intron-variant
rs1000310618 -- 37,493,158(+) GGTCA(-/GAAAGGCGAGG)GAACC intron-variant
rs1000379198 -- 37,496,647(+) CATGT(A/G)TTGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC167 Gene

Variant ID Type Subtype PubMed ID
esv2752124 CNV gain 17911159
esv3413317 CNV duplication 20981092
nsv1015689 CNV gain 25217958

Variation tolerance for CCDC167 Gene

Residual Variation Intolerance Score: 47.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.48; 10.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC167 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC167

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC167 Gene

Disorders for CCDC167 Gene

Relevant External Links for CCDC167

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC167

No disorders were found for CCDC167 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC167 Gene

Publications for CCDC167 Gene

  1. Gene essentiality and synthetic lethality in haploid human cells. (PMID: 26472760) Blomen V.A. … Brummelkamp T.R. (Science 2015) 3 64
  2. A Novel GLP1 Receptor Interacting Protein ATP6ap2 Regulates Insulin Secretion in Pancreatic Beta Cells. (PMID: 26272612) Dai F.F. … Wheeler M.B. (J. Biol. Chem. 2015) 3 64
  3. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3 64
  4. Initial characterization of the human central proteome. (PMID: 21269460) Burkard T.R. … Colinge J. (BMC Syst. Biol. 2011) 4 64
  5. Identification of VKORC1 interaction partners by split-ubiquitin system and coimmunoprecipitation. (PMID: 21103663) Schaafhausen A. … MA1ller C.R. (Thromb. Haemost. 2011) 3 64

Products for CCDC167 Gene

Sources for CCDC167 Gene

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