CCDC163P Gene
pseudogene GIFtS: 27
GCID: GC01M045959
|
|
coiled-coil domain containing 163, pseudogene(Previous name: chromosome 1 open reading frame 231 )
(Previous symbol: C1orf231)
| |
Aliases
for CCDC163P gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA
Quality score for the ORGUL clustered with this gene is 3
| Aliases |
|---|
| Coiled-Coil Domain Containing 163, Pseudogene1 2 | | C1orf2311 2 | | LOC1266611 | | Chromosome 1 Open Reading Frame 2311 | | CDNA FLJ548864 | | Protein CCDC163P4 |
| External Ids: | HGNC: 270031 | Entrez Gene: 1266612 | Ensembl: ENSG000002366247 | UniProtKB: B4DV034 | UniProtKB: E9PLD64 |
|---|
| UniProtKB: E9PN014 | UniProtKB: E9PNU94 | UniProtKB: E9PPK74 | UniProtKB: F2Z3K34 | | ORGUL members: | |
|---|
| NONCODE:n409156 n409157 n346436 | |
Export aliases for CCDC163P gene to outside databasesPrevious GC identifers: GC01M045733 GC01M044071
Summaries
for CCDC163P gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for CCDC163P gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_032977.9
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for CCDC163P
Other transcription factors
Search SABiosciences Chromatin IP Primers for CCDC163P
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC163P |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1p34.1 Ensembl cytogenetic band: 1p34.1 HGNC cytogenetic band: 1p34.1CCDC163P Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M045959: view genomic region
(about GC identifiers)
Start:
|
45,959,538 bp from pter |
End:
|
45,965,751 bp from pter |
Size:
|
6,214 bases |
Orientation:
|
minus strand |
ORGUL member locations:
Legend (see complete legend)
45959597 45962674 45965751 chr1
|
Proteins
for CCDC163P gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/TrEMBL: B4DV03 (See
protein sequence)Recommended Name: HCG1780060, isoform CRA_b Size: 118 amino acids; 13258 DaUniProtKB/TrEMBL: E9PLD6 (See
protein sequence) Recommended Name: Protein CCDC163P Size: 118 amino acids; 13216 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: E9PN01 (See
protein sequence) Recommended Name: Protein CCDC163P Size: 66 amino acids; 7236 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: E9PNU9 (See
protein sequence) Recommended Name: Protein CCDC163P Size: 97 amino acids; 10553 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: E9PPK7 (See
protein sequence) Recommended Name: Protein CCDC163P Size: 164 amino acids; 18127 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataUniProtKB/TrEMBL: F2Z3K3 (See
protein sequence) Recommended Name: Protein CCDC163P Size: 145 amino acids; 16203 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered aspreliminary dataCCDC163P Protein expression data from MOPED and PaxDb: --
ENSEMBL proteins: ENSP00000431736 ENSP00000434894 ENSP00000435181 ENSP00000435596 ENSP00000432738 ENSP00000432622
Human Recombinant Protein Products:
CCDC163P Antibody Products:
Assay Products for CCDC163P: |
Protein
Domains /
Families
for CCDC163P gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: B4DV03 |
Function
for CCDC163P gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC163P (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC163P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript Custom all cDNA clones Services for CCDC163P | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCDC163P | |  | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CCDC163P |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC163P |
|
Pathways & Interactions
for CCDC163P gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC163P
|
Drugs & Compounds
for CCDC163P gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CCDC163P
Search CenterWatch for drugs/clinical trials and news about CCDC163P
|
Transcripts
for CCDC163P gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CCDC163P gene: NM_001102601.1 Unigene Cluster for CCDC163P: Coiled-coil domain containing 163, pseudogene Hs.461300 [show with all ESTs]Unigene Representative Sequence: NR_0332988 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000415578(uc001cnu.3 uc001cnw.3 uc001cnv.3 uc009vxt.2 uc009vxu.2)
ENST00000515561 ENST00000502793(uc001cnt.3) ENST00000490551 ENST00000432082
ENST00000514299 ENST00000486476 ENST00000488405
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC163P (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC163P
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for CCDC163P | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCDC163P | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CCDC163P |
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC163P
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat CCDC163P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC163P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC163P |
Additional cDNA sequence: AK054714.1 AK300867.1 BC036618.2 BC047421.1 BC101254.2 BC101255.2 BC101256.1 BC101257.1 BC113060.1 BC113061.1 NR_033296.1 NR_033297.1 NR_033298.1 6 DOTS entries: DT.100778057 DT.91755512 DT.103347 DT.121402060 DT.100748619 DT.121402063 24/40 AceView cDNA sequences (see all 40): BF437861 BC047421 CR606750 AI268516 BM920413 AI792796 AK054714 BI833152 BX350367 D12074 BI666957 BC036618 BI596838 D12075 BM906246 CD672203 BX393447 BE904870 AI792797 BX117044 BF355392 BF355394 AA928930 N46903
GeneLoc Exon Structure
|
Expression
for CCDC163P gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CCDC163P expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCTAGCCCCA
About this image
Genevestigator expression for CCDC163P
SOURCE GeneReport for Unigene cluster: Hs.461300
SABiosciences Custom PCR Arrays for CCDC163P
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC163P
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse / rat CCDC163P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC163P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC163P | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC163P |
Orthologs
for CCDC163P gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of human and mouse.
Orthologs for CCDC163P gene from 1/3 species (see all 3) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Ccdc1635 |
coiled-coil domain containing 163 |
-- |
|
4 (53.29 cM) 116708509 |
ENSEMBL Gene Tree for CCDC163P (if available)
TreeFam Gene Tree for CCDC163P (if available) |
Paralogs
for CCDC163P gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for CCDC163P gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for CCDC163P (45959538 - 45965751 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CCDC163P: -- | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for CCDC163P gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for CCDC163P gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CCDC163P gene integrated from 9 sources:
(articles sorted by number of sources associating them with CCDC163P) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Comparative analysis of an unusual gene arrangement i n the human chromosome 1. (PubMed id 18672041)1, 3 MakaA8owska I. (2008)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for CCDC163P gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing CCDC163P gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CCDC163P gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CCDC163P gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for CCDC163P gene:
Search GeneIP for patents involving CCDC163P
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CCDC163P gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for CCDC163P | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CCDC163P | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC163P | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for CCDC163P | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC163P | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC163P | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for CCDC163P | | OriGene Custom Protein Services for CCDC163P | | | OriGene Custom Immunoassay Development | | |
| |
 |
 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CCDC163P | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCDC163P | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC163P | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC163P | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC163P | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC163P |
| |
 |  |  |  | |
| | | |  |  |  |  | | | | |
 |
 |
 |
 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC163P |
|  |  |  | | | | Search ThermoFisher Antibodies for CCDC163P |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat CCDC163P |
|
|
|
|
GeneCards Homepage -
Last full update: 19 Mar 2013 -
Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013
View Random Gene
|
Category
|
|
|
von Willebrand factor
|
| GIFtS Group |
|
Developed at the Crown Human Genome Center,
Department of Molecular Genetics,
the Weizmann Institute of Science
Copyright © 1996-2013
, Weizmann Institute of Science. All Rights Reserved.
hostname: 356977-web1.xennexinc.com
index build: 100 solr: 1.4
|
