Aliases for CCDC163 Gene
Aliases for CCDC163 Gene
External Ids for CCDC163 Gene
- HGNC: 27003
- Entrez Gene: 126661
- Ensembl: ENSG00000280670
Previous HGNC Symbols for CCDC163 Gene
- C1orf231
- CCDC163P
Summaries for CCDC163 Gene
GeneCards Summary for CCDC163 Gene
CCDC163 (Coiled-Coil Domain Containing 163) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC163 Gene
Genomics for CCDC163 Gene
Regulatory Elements for CCDC163 Gene
Enhancers for CCDC163 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH01G045520 | 1.2 | ENCODE | 98.5 | -21.8 | -21782 | 3.7 | MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 | CCDC163 TOE1 PRDX1 GPBP1L1 AKR1A1 ZSWIM5 RPS8 CCDC17 MMACHC PIR60929 |
| GH01G045498 | 1.1 | ENCODE | 98.9 | +0.1 | 99 | 3.3 | HDGF PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 | CCDC163 PRDX1 TOE1 GPBP1L1 AKR1A1 HMGB1P48 PTCH2 ZSWIM5 RPS8 MMACHC |
| GH01G045489 | 1.1 | ENCODE | 98.6 | +9.2 | 9170 | 2.2 | HDGF PKNOX1 FOXA2 CREB3L1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 | CCDC163 PRDX1 IPP NSUN4 ZSWIM5 MMACHC TESK2 ENSG00000236872 |
| GH01G045443 | 1.1 | FANTOM5 ENCODE | 55.4 | +56.1 | 56073 | 1.5 | ESRRA HINFP DDX20 PYGO2 ZBTB40 ZNF644 RELA ZNF766 GATA3 ZNF639 | CCDC163 PRDX1 TESK2 ENSG00000236872 |
| GH01G045513 | 0.9 | ENCODE | 65.7 | -13.6 | -13633 | 1.1 | FOXA2 ARID4B YY1 ZNF121 FOS MXD4 PPARG KAT8 ZNF592 NFIL3 | CCDC163 AKR1A1 MMACHC PIR60929 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CCDC163 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CCDC163 Gene
- Chromosome:
- 1
- Start:
- 45,493,866 bp from pter
- End:
- 45,500,079 bp from pter
- Size:
- 6,214 bases
- Orientation:
- Minus strand
Genomic View for CCDC163 Gene
Genes around CCDC163 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1p34.1 by Ensembl
- 1p34.1 by Entrez Gene
- 1p34.1 by HGNC
CCDC163 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CCDC163 Gene
Proteins for CCDC163 Gene
-
Protein details for CCDC163 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- A0A0D9SEU7
- Recommended name:
- Coiled-coil domain-containing 163
- Protein Accession:
- A0A0D9SEU7
Protein attributes for CCDC163 Gene
- Size:
- 97 amino acids
- Molecular mass:
- 10553 Da
- Quaternary structure:
- No Data Available
-
Protein details for CCDC163 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- A0A0D9SF12
- Recommended name:
- Coiled-coil domain-containing 163
- Protein Accession:
- A0A0D9SF12
Protein attributes for CCDC163 Gene
- Size:
- 145 amino acids
- Molecular mass:
- 16203 Da
- Quaternary structure:
- No Data Available
-
Protein details for CCDC163 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- A0A0D9SFD8
- Recommended name:
- Coiled-coil domain-containing 163
- Protein Accession:
- A0A0D9SFD8
Protein attributes for CCDC163 Gene
- Size:
- 66 amino acids
- Molecular mass:
- 7236 Da
- Quaternary structure:
- No Data Available
-
Protein details for CCDC163 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- A0A0D9SG11
- Recommended name:
- Coiled-coil domain-containing 163
- Protein Accession:
- A0A0D9SG11
Protein attributes for CCDC163 Gene
- Size:
- 118 amino acids
- Molecular mass:
- 13216 Da
- Quaternary structure:
- No Data Available
-
Protein details for CCDC163 Gene (UniProtKB/TrEMBL)
- Protein Symbol:
- B4DV03
- Recommended name:
- Coiled-coil domain-containing 163
- Protein Accession:
- B4DV03
Protein attributes for CCDC163 Gene
- Size:
- 118 amino acids
- Molecular mass:
- 13258 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for CCDC163 Gene
No Post-translational modifications
Other Protein References for CCDC163 Gene
- ENSEMBL proteins:
Antibody Products
- Search GeneTex for Antibodies for CCDC163
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCDC163
- Origene Custom Protein Services for CCDC163
- Search GeneTex for Proteins for CCDC163
Assay Products
No data available for DME Specific Peptides for CCDC163 Gene
Domains & Families for CCDC163 Gene
Protein Domains for CCDC163 Gene
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC163 Gene
Function for CCDC163 Gene
Phenotypes for CCDC163 Gene
- GenomeRNAi human phenotypes for CCDC163:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC163
-
- Search ViGene Biosciences for CCDC163
CRISPR Products
- Browse CRISPR knockouts for CCDC163
miRNA Products
- Search ViGene Biosciences for CCDC163
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for CCDC163
- Browse OriGene Inhibitory RNA Products For CCDC163
- Search ViGene Biosciences for CCDC163
Clone Products
- GenScript: Custom all cDNA clones Services for CCDC163
- VectorBuilder custom plasmid, inducible vectors for CCDC163
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC163
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CCDC163
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC163 Gene
Localization for CCDC163 Gene
| Compartment | Confidence |
|---|---|
| plasma membrane | 1 |
| extracellular | 1 |
| peroxisome | 1 |
| nucleus | 1 |
| endoplasmic reticulum | 1 |
| cytosol | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0016021 | integral component of membrane | IEA | -- |
No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCDC163 Gene
Transcripts for CCDC163 Gene
mRNA/cDNA for CCDC163 Gene
- (1) REFSEQ mRNAs :
- (40) Selected AceView cDNA sequences:
- (8) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for CCDC163
miRNA Products
- Search ViGene Biosciences for CCDC163
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for CCDC163
- Browse OriGene Inhibitory RNA Products For CCDC163
- Search ViGene Biosciences for CCDC163
Clone Products
- GenScript: Custom all cDNA clones Services for CCDC163
- VectorBuilder custom plasmid, inducible vectors for CCDC163
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC163
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CCDC163 Gene
NURSA nuclear receptor signaling pathways regulating expression of CCDC163 Gene:
CCDC163
No Expression Related Data Available
Primer Products
-
OriGene qPCR primer pairs for CCDC163
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC163 Gene
Orthologs for CCDC163 Gene
No data available for Orthologs for CCDC163 Gene
Paralogs for CCDC163 Gene
No data available for Paralogs for CCDC163 Gene
Variants for CCDC163 Gene
| SNP ID | Clin | Chr 01 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs779893448 | Pathogenic | 45,500,335(+) | GCTAT(A/G)GAGCC | upstream-variant-2KB, reference, missense, utr-variant-5-prime | |
| rs201898615 | Uncertain significance | 45,500,399(+) | TCGAG(G/T)TTTAC | upstream-variant-2KB, reference, missense, utr-variant-5-prime | |
| rs368071858 | Uncertain significance | 45,500,185(+) | ACGCA(C/T)CCCAA | upstream-variant-2KB, utr-variant-5-prime | |
| rs539415170 | Uncertain significance | 45,500,210(+) | AGGCA(A/T)TATGG | upstream-variant-2KB, utr-variant-5-prime | |
| rs556541742 | Uncertain significance | 45,500,239(+) | TTCCT(A/G)CCTGG | upstream-variant-2KB, utr-variant-5-prime |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv1477203 | CNV | insertion | 17803354 |
| esv1741401 | CNV | insertion | 17803354 |
| esv2747808 | CNV | deletion | 23290073 |
| esv3893512 | CNV | gain | 25118596 |
| nsv829726 | CNV | loss | 17160897 |
Gene Damage Index Score:
5.78;
73.57% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for CCDC163 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CCDC163
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC163 Gene
Disorders for CCDC163 Gene
Relevant External Links for CCDC163
No disorders were found for CCDC163 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC163 Gene
Publications for CCDC163 Gene
- Comparative analysis of an unusual gene arrangement in the human chromosome 1. (PMID: 18672041) MakaA8owska I. (Gene 2008) 2 3 64
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for CCDC163 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCDC163
- Origene Custom Protein Services for CCDC163
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CCDC163
- Browse OriGene Inhibitory RNA Products For CCDC163
- OriGene qPCR primer pairs for CCDC163
- Browse CRISPR knockouts for CCDC163
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CCDC163
- GenScript: Custom all cDNA clones Services for CCDC163
- GenScript Custom Purified and Recombinant Proteins Services for CCDC163
- GenScript Custom Assay Services for CCDC163
- GenScript Custom overexpressing Cell Line Services for CCDC163
- Browse GenScript CRISPR for CCDC163
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CCDC163
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC163
- VectorBuilder custom plasmid, inducible vectors for CCDC163
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC163
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CCDC163 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer