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Aliases for CCDC163 Gene

Aliases for CCDC163 Gene

  • Coiled-Coil Domain Containing 163 2 3 5
  • Coiled-Coil Domain Containing 163, Pseudogene 2 3
  • Chromosome 1 Open Reading Frame 231 2
  • C1orf231 3
  • CCDC163P 3

External Ids for CCDC163 Gene

Previous HGNC Symbols for CCDC163 Gene

  • C1orf231
  • CCDC163P

Summaries for CCDC163 Gene

GeneCards Summary for CCDC163 Gene

CCDC163 (Coiled-Coil Domain Containing 163) is a Pseudogene.

Additional gene information for CCDC163 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC163 Gene

Genomics for CCDC163 Gene

Regulatory Elements for CCDC163 Gene

Enhancers for CCDC163 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H045520 1.2 ENCODE 98.5 -21.8 -21782 3 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZC3H11A CCDC163 TOE1 LRRC41 MUTYH GPBP1L1 NASP PRDX1 ZSWIM5 RPS8 PTCH2
GH01H045498 1.1 ENCODE 98.9 +0.1 99 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 CCDC163 PRDX1 MUTYH LRRC41 TOE1 TMA16P2 LOC110117498 NASP GPBP1L1 AKR1A1
GH01H045489 1.1 ENCODE 98.6 +9.2 9170 2 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CCDC163 NSUN4 PRDX1 LRRC41 TOE1 IPP GPBP1L1 KIF2C ZSWIM5 MMACHC
GH01H045443 1.1 FANTOM5 ENCODE 55.4 +56.1 56073 1 HINFP PYGO2 ZBTB40 ZNF644 RELA ZNF766 GATA3 ZNF639 ZNF687 CAVIN1 CCDC163 PRDX1 TESK2 PPIAP36
GH01H045514 0.6 ENCODE 98.5 -15.6 -15585 2 ZNF217 PAF1 CTBP1 CEBPA HNF4G KLF9 HNF4A ZNF7 CCDC163 AKR1A1 CCDC17 GPBP1L1 MMACHC PIR60929 PRDX1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC163 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC163 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005858 -121 1601 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766

Genomic Location for CCDC163 Gene

Chromosome:
1
Start:
45,493,866 bp from pter
End:
45,500,079 bp from pter
Size:
6,214 bases
Orientation:
Minus strand

Genomic View for CCDC163 Gene

Genes around CCDC163 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC163 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC163 Gene

Proteins for CCDC163 Gene

  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SEU7
    Recommended name:
    Coiled-coil domain-containing 163
    Protein Accession:
    A0A0D9SEU7

    Protein attributes for CCDC163 Gene

    Size:
    97 amino acids
    Molecular mass:
    10553 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SF12
    Recommended name:
    Coiled-coil domain-containing 163
    Protein Accession:
    A0A0D9SF12

    Protein attributes for CCDC163 Gene

    Size:
    145 amino acids
    Molecular mass:
    16203 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SFD8
    Recommended name:
    Coiled-coil domain-containing 163
    Protein Accession:
    A0A0D9SFD8

    Protein attributes for CCDC163 Gene

    Size:
    66 amino acids
    Molecular mass:
    7236 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SG11
    Recommended name:
    Coiled-coil domain-containing 163
    Protein Accession:
    A0A0D9SG11

    Protein attributes for CCDC163 Gene

    Size:
    118 amino acids
    Molecular mass:
    13216 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    B4DV03
    Recommended name:
    Coiled-coil domain-containing 163
    Protein Accession:
    B4DV03

    Protein attributes for CCDC163 Gene

    Size:
    118 amino acids
    Molecular mass:
    13258 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC163 Gene

Post-translational modifications for CCDC163 Gene

No Post-translational modifications

Other Protein References for CCDC163 Gene

No data available for DME Specific Peptides for CCDC163 Gene

Domains & Families for CCDC163 Gene

Gene Families for CCDC163 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for CCDC163 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC163: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC163 Gene

Function for CCDC163 Gene

Phenotypes From GWAS Catalog for CCDC163 Gene

Phenotypes for CCDC163 Gene

GenomeRNAi human phenotypes for CCDC163:
genes like me logo Genes that share phenotypes with CCDC163: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC163
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC163 Gene

Localization for CCDC163 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC163 gene
Compartment Confidence
plasma membrane 1
extracellular 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for CCDC163 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC163: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for CCDC163 Gene

Pathways & Interactions for CCDC163 Gene

SuperPathways for CCDC163 Gene

No Data Available

Interacting Proteins for CCDC163 Gene

Gene Ontology (GO) - Biological Process for CCDC163 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC163 Gene

Drugs & Compounds for CCDC163 Gene

No Compound Related Data Available

Transcripts for CCDC163 Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC163
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC163 Gene

No ASD Table

Relevant External Links for CCDC163 Gene

GeneLoc Exon Structure for
CCDC163
ECgene alternative splicing isoforms for
CCDC163

Expression for CCDC163 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC163 Gene:

CCDC163
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC163 Gene

Orthologs for CCDC163 Gene

Evolution for CCDC163 Gene

ENSEMBL:
Gene Tree for CCDC163 (if available)
TreeFam:
Gene Tree for CCDC163 (if available)

No data available for Orthologs for CCDC163 Gene

Paralogs for CCDC163 Gene

No data available for Paralogs for CCDC163 Gene

Variants for CCDC163 Gene

Sequence variations from dbSNP and Humsavar for CCDC163 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs779893448 Pathogenic 45,500,335(+) GCTAT(A/G)GAGCC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs201898615 Uncertain significance 45,500,399(+) TCGAG(G/T)TTTAC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs368071858 Uncertain significance 45,500,185(+) ACGCA(C/T)CCCAA upstream-variant-2KB, utr-variant-5-prime
rs539415170 Uncertain significance 45,500,210(+) AGGCA(A/T)TATGG upstream-variant-2KB, utr-variant-5-prime
rs556541742 Uncertain significance 45,500,239(+) TTCCT(A/G)CCTGG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CCDC163 Gene

Variant ID Type Subtype PubMed ID
esv1477203 CNV insertion 17803354
esv1741401 CNV insertion 17803354
esv2747808 CNV deletion 23290073
esv3893512 CNV gain 25118596
nsv829726 CNV loss 17160897

Variation tolerance for CCDC163 Gene

Gene Damage Index Score: 5.78; 73.57% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC163 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC163

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC163 Gene

Disorders for CCDC163 Gene

Relevant External Links for CCDC163

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC163
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC163

No disorders were found for CCDC163 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC163 Gene

Publications for CCDC163 Gene

  1. Comparative analysis of an unusual gene arrangement in the human chromosome 1. (PMID: 18672041) Makałowska I (Gene 2008) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CCDC163 Gene

Sources for CCDC163 Gene

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