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Aliases for CCDC163 Gene

Aliases for CCDC163 Gene

  • Coiled-Coil Domain Containing 163 2 3 5
  • Coiled-Coil Domain Containing 163, Pseudogene 2 3
  • Chromosome 1 Open Reading Frame 231 2
  • C1orf231 3
  • CCDC163P 3

External Ids for CCDC163 Gene

Previous HGNC Symbols for CCDC163 Gene

  • C1orf231
  • CCDC163P

Summaries for CCDC163 Gene

GeneCards Summary for CCDC163 Gene

CCDC163 (Coiled-Coil Domain Containing 163) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC163 Gene

Genomics for CCDC163 Gene

Regulatory Elements for CCDC163 Gene

Enhancers for CCDC163 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F045498 0.6 ENCODE 98.9 +0.1 99 3.3 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CCDC163 PRDX1 TOE1 ZSWIM5 RPS8 TMA16P2 ENSG00000250719 KIF2C GPBP1L1 AKR1A1
GH01F045489 0.2 ENCODE 98.5 +9.2 9170 2.2 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 CCDC163 PRDX1 IPP NSUN4 ZSWIM5 MMACHC TESK2 ENSG00000236872
GH01F045514 0.2 ENCODE 98.5 -15.6 -15585 2.2 PAF1 ZNF766 CEBPA KLF9 ZNF7 CCDC163 AKR1A1 CCDC17 GPBP1L1 MMACHC PIR60929 PRDX1
GH01F045517 0.4 ENCODE 98.5 -17.2 -17220 0.5 HDGF KLF9 CCDC163 AKR1A1 CCDC17 GPBP1L1 PIR60929 PRDX1
GH01F045520 1.2 ENCODE 98.5 -21.8 -21782 3.7 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 SP3 CCDC163 TOE1 PRDX1 GPBP1L1 AKR1A1 ZSWIM5 RPS8 CCDC17 PTCH2 MMACHC
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC163 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC163 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001519838 -121 2001 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for CCDC163 Gene

Chromosome:
1
Start:
45,493,866 bp from pter
End:
45,500,079 bp from pter
Size:
6,214 bases
Orientation:
Minus strand

Genomic View for CCDC163 Gene

Genes around CCDC163 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC163 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC163 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC163 Gene

Proteins for CCDC163 Gene

  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SEU7
    Recommended name:
    Protein CCDC163
    Protein Accession:
    A0A0D9SEU7

    Protein attributes for CCDC163 Gene

    Size:
    97 amino acids
    Molecular mass:
    10553 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SF12
    Recommended name:
    Protein CCDC163
    Protein Accession:
    A0A0D9SF12

    Protein attributes for CCDC163 Gene

    Size:
    145 amino acids
    Molecular mass:
    16203 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SFD8
    Recommended name:
    Protein CCDC163
    Protein Accession:
    A0A0D9SFD8

    Protein attributes for CCDC163 Gene

    Size:
    66 amino acids
    Molecular mass:
    7236 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0D9SG11
    Recommended name:
    Protein CCDC163
    Protein Accession:
    A0A0D9SG11

    Protein attributes for CCDC163 Gene

    Size:
    118 amino acids
    Molecular mass:
    13216 Da
    Quaternary structure:
    No Data Available
  • Protein details for CCDC163 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    B4DV03
    Recommended name:
    HCG1780060, isoform CRA_b
    Protein Accession:
    B4DV03

    Protein attributes for CCDC163 Gene

    Size:
    118 amino acids
    Molecular mass:
    13258 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC163 Gene

Post-translational modifications for CCDC163 Gene

No Post-translational modifications

Other Protein References for CCDC163 Gene

No data available for DME Specific Peptides for CCDC163 Gene

Domains & Families for CCDC163 Gene

Protein Domains for CCDC163 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC163: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC163 Gene

Function for CCDC163 Gene

Phenotypes for CCDC163 Gene

GenomeRNAi human phenotypes for CCDC163:
genes like me logo Genes that share phenotypes with CCDC163: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC163 Gene

Localization for CCDC163 Gene

Gene Ontology (GO) - Cellular Components for CCDC163 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CCDC163: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CCDC163 Gene

Pathways & Interactions for CCDC163 Gene

SuperPathways for CCDC163 Gene

No Data Available

Interacting Proteins for CCDC163 Gene

Gene Ontology (GO) - Biological Process for CCDC163 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC163 Gene

Transcripts for CCDC163 Gene

Unigene Clusters for CCDC163 Gene

Coiled-coil domain containing 163, pseudogene:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC163 Gene

No ASD Table

Relevant External Links for CCDC163 Gene

GeneLoc Exon Structure for
CCDC163
ECgene alternative splicing isoforms for
CCDC163

Expression for CCDC163 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC163 Gene:

CCDC163

SOURCE GeneReport for Unigene cluster for CCDC163 Gene:

Hs.461300
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCDC163 Gene

Orthologs for CCDC163 Gene

Evolution for CCDC163 Gene

ENSEMBL:
Gene Tree for CCDC163 (if available)
TreeFam:
Gene Tree for CCDC163 (if available)

No data available for Orthologs for CCDC163 Gene

Paralogs for CCDC163 Gene

No data available for Paralogs for CCDC163 Gene

Variants for CCDC163 Gene

Sequence variations from dbSNP and Humsavar for CCDC163 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs779893448 Pathogenic 45,500,335(+) GCTAT(A/G)GAGCC upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs10789464 -- 45,493,430(+) GATCT(C/T)TTGAG downstream-variant-500B
rs111873775 -- 45,500,442(+) CTAGG(A/G)CGAAA intron-variant, upstream-variant-2KB
rs112100428 -- 45,497,745(+) CCGTC(A/C/T)GGGAG intron-variant
rs11211124 -- 45,496,737(+) AGCCA(C/T)TGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC163 Gene

Variant ID Type Subtype PubMed ID
esv1477203 CNV insertion 17803354
esv1741401 CNV insertion 17803354
esv2747808 CNV deletion 23290073
esv3893512 CNV gain 25118596
nsv829726 CNV loss 17160897

Variation tolerance for CCDC163 Gene

Gene Damage Index Score: 5.78; 73.57% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC163 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC163

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC163 Gene

Disorders for CCDC163 Gene

Relevant External Links for CCDC163

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC163
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC163

No disorders were found for CCDC163 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC163 Gene

Publications for CCDC163 Gene

  1. Comparative analysis of an unusual gene arrangement in the human chromosome 1. (PMID: 18672041) MakaA8owska I. (Gene 2008) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CCDC163 Gene

Sources for CCDC163 Gene

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