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CCDC162P Gene(Pseudogene)

Coiled-Coil Domain Containing 162, Pseudogene

GCID:
GC06P109167
GIFtS:
25
Genes Participants
UDN Logo

Aliases for CCDC162P Gene

Aliases for CCDC162P Gene

  • Coiled-Coil Domain Containing 162, Pseudogene 2 3 5
  • C6orf184 3 4
  • C6orf185 3 4
  • CCDC162 3 4
  • Coiled-Coil Domain-Containing Protein 162 Pseudogene 4
  • Chromosome 6 Open Reading Frame 184 2
  • Chromosome 6 Open Reading Frame 185 2
  • BA425D10.3 3
  • BA425D10.7 3

External Ids for CCDC162P Gene

Previous HGNC Symbols for CCDC162P Gene

  • C6orf184
  • C6orf185
  • CCDC162

Previous GeneCards Identifiers for CCDC162P Gene

  • GC06P109613
  • GC06P109285
  • GC06P109166

Summaries for CCDC162P Gene

GeneCards Summary for CCDC162P Gene

CCDC162P (Coiled-Coil Domain Containing 162, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC162P Gene

Genomics for CCDC162P Gene

Products:

  1. Regulatory Element

Regulatory Elements for CCDC162P Gene

Enhancers for CCDC162P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G109307 1.5 Ensembl ENCODE dbSUPER 29 +142.7 142685 1.7 PKNOX1 ATF1 ARNT YY1 TCF12 ZNF766 ELK1 GATA2 KLF13 CAVIN1 CCDC162P ENSG00000233908 CD164 RNU6-653P RNY3P11 RPL7P28
GH06G109313 1.1 FANTOM5 ENCODE dbSUPER 30 +149.1 149083 2.7 PKNOX1 PBX2 SCRT2 FOXP1 CCDC162P PTCHD3P3 ENSG00000233908 CD164 PPIL6 SMPD2 RNY3P11 RPL7P28
GH06G109303 1.6 Ensembl ENCODE dbSUPER 19.9 +138.7 138703 3.0 PKNOX1 FOXA2 CREB3L1 ARNT ZNF766 JUNB REST ZNF592 MEF2D SMARCA4 CD164 CCDC162P SMPD2 GC06P109306 PTCHD3P3
GH06G109316 1.4 Ensembl ENCODE dbSUPER 20.8 +152.8 152752 4.0 FOXA2 ARID4B RAD21 YY1 MIXL1 SP5 NR2F2 KAT8 MIER3 SMARCA4 CD164 CCDC162P PTCHD3P3 ENSG00000233908 PPIL6 SMPD2 RPL7P28 RNY3P11
GH06G109235 1.9 FANTOM5 Ensembl ENCODE dbSUPER 13.9 +72.7 72658 5.0 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B TCF12 GATA2 FOS REST CCDC162P CD164 MICAL1 SMPD2 C6orf183 LOC105377933
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC162P on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC162P Gene

Chromosome:
6
Start:
109,165,831 bp from pter
End:
109,355,063 bp from pter
Size:
189,233 bases
Orientation:
Plus strand

Genomic View for CCDC162P Gene

Genes around CCDC162P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC162P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC162P Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCDC162P Gene

Proteins for CCDC162P Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CCDC162P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A2VCL2-CC162_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 162
    Protein Accession:
    A2VCL2
    Secondary Accessions:
    • A1A4V1
    • A4QMU0
    • Q5JSU0
    • Q5JSU7

    Protein attributes for CCDC162P Gene

    Size:
    907 amino acids
    Molecular mass:
    103842 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI40699.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC162P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC162P Gene

Protein Expression for CCDC162P Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CCDC162P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC162P Gene

Domains & Families for CCDC162P Gene

Protein Domains for CCDC162P Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC162P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC162P: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC162P Gene

Function for CCDC162P Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry
genes like me logo Genes that share phenotypes with CCDC162P: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC162P Gene

Localization for CCDC162P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC162P Gene

Pathways & Interactions for CCDC162P Gene

SuperPathways for CCDC162P Gene

PathCards logo More details on SuperPathways for CCDC162P
No Data Available

Interacting Proteins for CCDC162P Gene

Gene Ontology (GO) - Biological Process for CCDC162P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC162P Gene

Drugs & Compounds for CCDC162P Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCDC162P Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CCDC162P Gene

(5) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC162P Gene

Coiled-coil domain containing 162, pseudogene:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC162P Gene

No ASD Table

Relevant External Links for CCDC162P Gene

GeneLoc Exon Structure for
CCDC162P
ECgene alternative splicing isoforms for
CCDC162P

Expression for CCDC162P Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC162P Gene

mRNA expression in normal human tissues for CCDC162P Gene
mRNA expression by GTEx for CCDC162P Gene

mRNA differential expression in normal tissues according to GTEx for CCDC162P Gene

This gene is overexpressed in Testis (x5.1) and Liver (x4.1).

Protein differential expression in normal tissues from HIPED for CCDC162P Gene

This gene is overexpressed in Breast (57.1) and Neutrophil (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC162P Gene



Protein tissue co-expression partners for CCDC162P Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC162P Gene:

CCDC162P

SOURCE GeneReport for Unigene cluster for CCDC162P Gene:

Hs.373914
genes like me logo Genes that share expression patterns with CCDC162P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC162P Gene

Orthologs for CCDC162P Gene

Evolution for CCDC162P Gene

ENSEMBL:
Gene Tree for CCDC162P (if available)
TreeFam:
Gene Tree for CCDC162P (if available)

No data available for Orthologs for CCDC162P Gene

Paralogs for CCDC162P Gene

No data available for Paralogs for CCDC162P Gene

Variants for CCDC162P Gene

Sequence variations from dbSNP and Humsavar for CCDC162P Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000063596 -- 109,297,735(+) TTTTT(A/G)GTTAG intron-variant
rs1000238436 -- 109,304,803(+) CCATC(C/T)TCTCA intron-variant
rs1000340809 -- 109,298,414(+) TCCAC(A/G/T)TCTGT intron-variant
rs1000615440 -- 109,293,177(+) TAAAT(A/T)AATTA upstream-variant-2KB
rs1000676286 -- 109,300,080(+) TTTGC(C/T)GGTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC162P Gene

Variant ID Type Subtype PubMed ID
nsv527719 CNV loss 19592680

Relevant External Links for CCDC162P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC162P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC162P Gene

Disorders for CCDC162P Gene

Relevant External Links for CCDC162P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC162P

No disorders were found for CCDC162P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC162P Gene

Publications for CCDC162P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  3. Seventy-five genetic loci influencing the human red blood cell. (PMID: 23222517) van der Harst P. … Chambers J.C. (Nature 2012) 3 64
  4. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y. … Kamatani N. (Nat. Genet. 2010) 3 64
  5. Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. (PMID: 19862010) Ganesh S.K. … Lin J.P. (Nat. Genet. 2009) 3 64

Products for CCDC162P Gene

Sources for CCDC162P Gene

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