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Aliases for CCDC162P Gene

Aliases for CCDC162P Gene

  • Coiled-Coil Domain Containing 162, Pseudogene 2 3 5
  • C6orf184 3 4
  • C6orf185 3 4
  • CCDC162 3 4
  • Coiled-Coil Domain-Containing Protein 162 Pseudogene 4
  • Chromosome 6 Open Reading Frame 184 2
  • Chromosome 6 Open Reading Frame 185 2
  • BA425D10.3 3
  • BA425D10.7 3

External Ids for CCDC162P Gene

Previous HGNC Symbols for CCDC162P Gene

  • C6orf184
  • C6orf185
  • CCDC162

Previous GeneCards Identifiers for CCDC162P Gene

  • GC06P109613
  • GC06P109285

Summaries for CCDC162P Gene

GeneCards Summary for CCDC162P Gene

CCDC162P (Coiled-Coil Domain Containing 162, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC162P Gene

Genomics for CCDC162P Gene

Regulatory Elements for CCDC162P Gene

Enhancers for CCDC162P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F109313 1.3 FANTOM5 ENCODE 30 +149.1 149081 2.7 PKNOX1 SCRT2 PBX2 CCDC162P PTCHD3P3 ENSG00000233908 CD164 PPIL6 SMPD2 RNY3P11 RPL7P28
GH06F109307 1.4 Ensembl ENCODE 29 +142.7 142683 1.7 PKNOX1 ATF1 ARNT ELK1 GATA2 KLF13 JUNB CREB3 MBD2 MEF2D CCDC162P ENSG00000233908 CD164 RNU6-653P RNY3P11 RPL7P28
GH06F109228 0.5 Ensembl ENCODE 26.2 +64.3 64299 2.8 KLF1 ZNF687 ZNF211 PKNOX1 DPF2 KLF4 MNT RAD21 GATA3 CTBP1 CCDC162P CD164 PPIL6 ENSG00000233908 PTCHD3P3 SMPD2 ZBTB24 LOC100996634 LOC105377933
GH06F109196 1.1 ENCODE 23.3 +30.7 30700 0.2 SOX13 GATAD2A TFAP4 SAP130 FOXA3 HMG20A ZNF644 RAD21 CEBPA MIXL1 CCDC162P CD164 ENSG00000233908 PTCHD3P3 LOC105377934 LOC100996634
GH06F109316 0.9 Ensembl ENCODE 20.8 +152.8 152750 4.0 SOX13 TFAP4 ZNF146 SAP130 ARID4B ZIC2 RAD21 ZNF7 YY1 POLR2A CD164 CCDC162P PTCHD3P3 ENSG00000233908 PPIL6 SMPD2 RPL7P28 RNY3P11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC162P on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC162P Gene

109,165,833 bp from pter
109,355,063 bp from pter
189,231 bases
Plus strand

Genomic View for CCDC162P Gene

Genes around CCDC162P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC162P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC162P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC162P Gene

Proteins for CCDC162P Gene

  • Protein details for CCDC162P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 162
    Protein Accession:
    Secondary Accessions:
    • A1A4V1
    • A4QMU0
    • Q5JSU0
    • Q5JSU7

    Protein attributes for CCDC162P Gene

    907 amino acids
    Molecular mass:
    103842 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAI40699.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC162P Gene


neXtProt entry for CCDC162P Gene

Post-translational modifications for CCDC162P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC162P Gene

Domains & Families for CCDC162P Gene

Protein Domains for CCDC162P Gene


Suggested Antigen Peptide Sequences for CCDC162P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC162P: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC162P Gene

Function for CCDC162P Gene

genes like me logo Genes that share phenotypes with CCDC162P: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC162P Gene

Localization for CCDC162P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC162P Gene

Pathways & Interactions for CCDC162P Gene

SuperPathways for CCDC162P Gene

No Data Available

Interacting Proteins for CCDC162P Gene

Gene Ontology (GO) - Biological Process for CCDC162P Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC162P Gene

Transcripts for CCDC162P Gene

mRNA/cDNA for CCDC162P Gene

(5) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC162P Gene

Coiled-coil domain containing 162, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC162P Gene

No ASD Table

Relevant External Links for CCDC162P Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC162P Gene

mRNA expression in normal human tissues for CCDC162P Gene

mRNA differential expression in normal tissues according to GTEx for CCDC162P Gene

This gene is overexpressed in Testis (x5.1) and Liver (x4.1).

Protein differential expression in normal tissues from HIPED for CCDC162P Gene

This gene is overexpressed in Breast (57.1) and Neutrophil (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC162P Gene

Protein tissue co-expression partners for CCDC162P Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC162P Gene:


SOURCE GeneReport for Unigene cluster for CCDC162P Gene:

genes like me logo Genes that share expression patterns with CCDC162P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC162P Gene

Orthologs for CCDC162P Gene

Evolution for CCDC162P Gene

Gene Tree for CCDC162P (if available)
Gene Tree for CCDC162P (if available)

No data available for Orthologs for CCDC162P Gene

Paralogs for CCDC162P Gene

No data available for Paralogs for CCDC162P Gene

Variants for CCDC162P Gene

Sequence variations from dbSNP and Humsavar for CCDC162P Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1006081 -- 109,304,347(+) GGTCA(C/T)GGGGA intron-variant
rs1008083 -- 109,305,776(-) GGGAG(A/G)GTTGG intron-variant
rs1008084 -- 109,305,762(-) ACTCT(C/T)GACTA intron-variant
rs11153165 -- 109,300,956(+) GGTTA(A/G)CCCTA intron-variant
rs11153166 -- 109,301,291(+) CAAGC(A/G)GGTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC162P Gene

Variant ID Type Subtype PubMed ID
nsv527719 CNV loss 19592680

Relevant External Links for CCDC162P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC162P Gene

Disorders for CCDC162P Gene

Relevant External Links for CCDC162P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC162P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC162P Gene

Publications for CCDC162P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  3. Seventy-five genetic loci influencing the human red blood cell. (PMID: 23222517) van der Harst P. … Chambers J.C. (Nature 2012) 3 64
  4. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y. … Kamatani N. (Nat. Genet. 2010) 3 64
  5. Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. (PMID: 19862010) Ganesh S.K. … Lin J.P. (Nat. Genet. 2009) 3 64

Products for CCDC162P Gene

Sources for CCDC162P Gene

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