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Aliases for CCDC162P Gene

Aliases for CCDC162P Gene

  • Coiled-Coil Domain Containing 162, Pseudogene 2 3 5
  • C6orf184 3 4
  • C6orf185 3 4
  • CCDC162 3 4
  • Coiled-Coil Domain-Containing Protein 162 Pseudogene 4
  • Coiled-Coil Domain Containing 162 Pseudogene 3
  • Chromosome 6 Open Reading Frame 184 2
  • Chromosome 6 Open Reading Frame 185 2
  • BA425D10.3 3
  • BA425D10.7 3

External Ids for CCDC162P Gene

Previous HGNC Symbols for CCDC162P Gene

  • C6orf184
  • C6orf185
  • CCDC162

Previous GeneCards Identifiers for CCDC162P Gene

  • GC06P109613

Summaries for CCDC162P Gene

GeneCards Summary for CCDC162P Gene

CCDC162P (Coiled-Coil Domain Containing 162, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC162P Gene

Genomics for CCDC162P Gene

Genomic Location for CCDC162P Gene

Chromosome:
6
Start:
109,285,485 bp from pter
End:
109,355,063 bp from pter
Size:
69,579 bases
Orientation:
Plus strand

Genomic View for CCDC162P Gene

Genes around CCDC162P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC162P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC162P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC162P Gene

No data available for Regulatory Elements for CCDC162P Gene

Proteins for CCDC162P Gene

  • Protein details for CCDC162P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A2VCL2-CC162_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 162
    Protein Accession:
    A2VCL2
    Secondary Accessions:
    • A1A4V1
    • A4QMU0
    • Q5JSU0
    • Q5JSU7

    Protein attributes for CCDC162P Gene

    Size:
    907 amino acids
    Molecular mass:
    103842 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI40699.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC162P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC162P Gene

Proteomics data for CCDC162P Gene at MOPED

Post-translational modifications for CCDC162P Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC162P Gene

Domains & Families for CCDC162P Gene

Protein Domains for CCDC162P Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC162P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC162P: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC162P Gene

Function for CCDC162P Gene

genes like me logo Genes that share phenotypes with CCDC162P: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC162P Gene

Localization for CCDC162P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC162P Gene

Pathways & Interactions for CCDC162P Gene

SuperPathways for CCDC162P Gene

No Data Available

Interacting Proteins for CCDC162P Gene

Gene Ontology (GO) - Biological Process for CCDC162P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC162P Gene

Drugs & Compounds for CCDC162P Gene

No Compound Related Data Available

Transcripts for CCDC162P Gene

mRNA/cDNA for CCDC162P Gene

(5) Additional mRNA sequences :
(12) Selected AceView cDNA sequences:
(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC162P Gene

Coiled-coil domain containing 162, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC162P Gene

No ASD Table

Relevant External Links for CCDC162P Gene

GeneLoc Exon Structure for
CCDC162P
ECgene alternative splicing isoforms for
CCDC162P

Expression for CCDC162P Gene

mRNA expression in normal human tissues for CCDC162P Gene

mRNA differential expression in normal tissues according to GTEx for CCDC162P Gene

This gene is overexpressed in Testis (x5.1) and Liver (x4.1).

Protein differential expression in normal tissues from HIPED for CCDC162P Gene

This gene is overexpressed in Breast (57.1) and Neutrophil (10.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC162P Gene



SOURCE GeneReport for Unigene cluster for CCDC162P Gene Hs.373914

genes like me logo Genes that share expression patterns with CCDC162P: view

Protein tissue co-expression partners for CCDC162P Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC162P Gene

Orthologs for CCDC162P Gene

Evolution for CCDC162P Gene

ENSEMBL:
Gene Tree for CCDC162P (if available)
TreeFam:
Gene Tree for CCDC162P (if available)

No data available for Orthologs for CCDC162P Gene

Paralogs for CCDC162P Gene

No data available for Paralogs for CCDC162P Gene

Variants for CCDC162P Gene

Sequence variations from dbSNP and Humsavar for CCDC162P Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs6927569 - 109,300,291(+) CCCTA(C/T)CCGGG intron-variant
rs1006081 -- 109,304,347(+) GGTCA(C/T)GGGGA intron-variant
rs1341271 -- 109,296,339(-) GATAA(A/T)TGTAG intron-variant
rs1008083 -- 109,305,776(-) GGGAG(A/G)GTTGG intron-variant
rs1008084 -- 109,305,762(-) ACTCT(C/T)GACTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC162P Gene

Variant ID Type Subtype PubMed ID
nsv527719 CNV Loss 19592680

Relevant External Links for CCDC162P Gene

HapMap Linkage Disequilibrium report
CCDC162P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC162P Gene

Disorders for CCDC162P Gene

Relevant External Links for CCDC162P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC162P

No disorders were found for CCDC162P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC162P Gene

Publications for CCDC162P Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Seventy-five genetic loci influencing the human red blood cell. (PMID: 23222517) van der Harst P. … Chambers J.C. (Nature 2012) 3
  3. Genome-wide association study of hematological and biochemical traits in a Japanese population. (PMID: 20139978) Kamatani Y. … Kamatani N. (Nat. Genet. 2010) 3
  4. Multiple loci influence erythrocyte phenotypes in the CHARGE Consortium. (PMID: 19862010) Ganesh S.K. … Lin J.P. (Nat. Genet. 2009) 3
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3

Products for CCDC162P Gene

Sources for CCDC162P Gene

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