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Aliases for CCDC160 Gene

Aliases for CCDC160 Gene

  • Coiled-Coil Domain Containing 160 2 3 5

External Ids for CCDC160 Gene

Previous GeneCards Identifiers for CCDC160 Gene

  • GC0XP133198
  • GC0XP133371
  • GC0XP122768

Summaries for CCDC160 Gene

GeneCards Summary for CCDC160 Gene

CCDC160 (Coiled-Coil Domain Containing 160) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC160 Gene

Genomics for CCDC160 Gene

Regulatory Elements for CCDC160 Gene

Enhancers for CCDC160 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG134171 1.5 FANTOM5 ENCODE dbSUPER 6.2 -63.4 -63413 4.8 ZNF76 ETS1 GLIS2 ZNF143 EGR2 ZNF202 SP3 CEBPB ZNF398 CBX8 CCDC160 GPC3 PHF6 MIR106A GC0XM134203 GC0XM134201 ENSG00000283638
GH0XG134186 0.5 ENCODE 12.6 -50.1 -50102 0.2 CTCF CBX8 PRDM6 BCL6B CCDC160 ENSG00000283638 LARP1BP3
GH0XG134187 0.4 Ensembl 12.2 -49.7 -49747 0.2 CBX8 CCDC160 ENSG00000283638 LARP1BP3
GH0XG133793 0.4 ENCODE 10.9 -442.6 -442593 1.3 FEZF1 CCDC160 RPSAP63 GC0XP133898 GC0XP133897
GH0XG134237 0.6 ENCODE 0.7 +0.1 99 0.2 MAZ RFX1 SIN3A BMI1 ZBTB40 PRDM6 GLIS2 ZBTB26 ZNF18 CCDC160 GC0XP134244
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC160 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC160 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000248917 254 999 MAZ RFX1 BMI1 ZBTB40 ZNF2 OSR2 PRDM6 GLIS2 PRDM4 ZBTB26

Genomic Location for CCDC160 Gene

Chromosome:
X
Start:
134,237,047 bp from pter
End:
134,246,207 bp from pter
Size:
9,161 bases
Orientation:
Plus strand

Genomic View for CCDC160 Gene

Genes around CCDC160 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC160 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC160 Gene

Proteins for CCDC160 Gene

  • Protein details for CCDC160 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGH7-CC160_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 160
    Protein Accession:
    A6NGH7

    Protein attributes for CCDC160 Gene

    Size:
    325 amino acids
    Molecular mass:
    38277 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC160 Gene

Post-translational modifications for CCDC160 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC160 Gene

No data available for DME Specific Peptides for CCDC160 Gene

Domains & Families for CCDC160 Gene

Protein Domains for CCDC160 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC160 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NGH7

UniProtKB/Swiss-Prot:

CC160_HUMAN :
  • Belongs to the CCDC160 family.
Family:
  • Belongs to the CCDC160 family.
genes like me logo Genes that share domains with CCDC160: view

No data available for Gene Families for CCDC160 Gene

Function for CCDC160 Gene

Phenotypes for CCDC160 Gene

genes like me logo Genes that share phenotypes with CCDC160: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC160 Gene

Localization for CCDC160 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC160 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC160 Gene

Pathways & Interactions for CCDC160 Gene

SuperPathways for CCDC160 Gene

No Data Available

Interacting Proteins for CCDC160 Gene

Gene Ontology (GO) - Biological Process for CCDC160 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC160 Gene

Drugs & Compounds for CCDC160 Gene

No Compound Related Data Available

Transcripts for CCDC160 Gene

mRNA/cDNA for CCDC160 Gene

(3) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC160 Gene

Coiled-coil domain containing 160:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC160 Gene

No ASD Table

Relevant External Links for CCDC160 Gene

GeneLoc Exon Structure for
CCDC160
ECgene alternative splicing isoforms for
CCDC160

Expression for CCDC160 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC160 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC160 Gene

This gene is overexpressed in Brain - Substantia nigra (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of CCDC160 Gene:

CCDC160

SOURCE GeneReport for Unigene cluster for CCDC160 Gene:

Hs.679431
genes like me logo Genes that share expression patterns with CCDC160: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC160 Gene

Orthologs for CCDC160 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC160 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC160 34 35
  • 99.59 (n)
dog
(Canis familiaris)
Mammalia CCDC160 34 35
  • 84.31 (n)
cow
(Bos Taurus)
Mammalia CCDC160 34 35
  • 83.28 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc160 34
  • 72.46 (n)
mouse
(Mus musculus)
Mammalia Ccdc160 34 16 35
  • 71.52 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC160 35
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC160 35
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100127779 34
  • 49.12 (n)
Species where no ortholog for CCDC160 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC160 Gene

ENSEMBL:
Gene Tree for CCDC160 (if available)
TreeFam:
Gene Tree for CCDC160 (if available)

Paralogs for CCDC160 Gene

No data available for Paralogs for CCDC160 Gene

Variants for CCDC160 Gene

Sequence variations from dbSNP and Humsavar for CCDC160 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000040709 -- 134,239,483(+) TTTGG(A/G)GACAT intron-variant
rs1000639973 -- 134,237,073(+) CACCG(A/G)GCATG upstream-variant-2KB, utr-variant-5-prime
rs1000644689 -- 134,244,166(+) ATTCT(A/G)TACAC intron-variant
rs1001015074 -- 134,243,830(+) GTTGG(C/T)GGCTT intron-variant
rs1001344595 -- 134,238,257(+) GAAGA(C/T)TTAGT intron-variant

Variation tolerance for CCDC160 Gene

Gene Damage Index Score: 0.64; 13.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC160 Gene

Human Gene Mutation Database (HGMD)
CCDC160
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC160

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCDC160 Gene

Disorders for CCDC160 Gene

Relevant External Links for CCDC160

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC160

No disorders were found for CCDC160 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC160 Gene

Publications for CCDC160 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 64
  2. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z. … Shaffer J.R. (Caries Res. 2014) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CCDC160 Gene

Sources for CCDC160 Gene

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