Aliases for CCDC160 Gene
External Ids for CCDC160 Gene
- HGNC: 37286
- Entrez Gene: 347475
- Ensembl: ENSG00000203952
- UniProtKB: A6NGH7
Previous GeneCards Identifiers for CCDC160 Gene
- GC0XP133198
- GC0XP133371
- GC0XP122768
Summaries for CCDC160 Gene
GeneCards Summary for CCDC160 Gene
CCDC160 (Coiled-Coil Domain Containing 160) is a Protein Coding gene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC160 Gene
Genomics for CCDC160 Gene
Regulatory Elements for CCDC160 Gene
Enhancers for CCDC160 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH0XG134171 | 1.5 | FANTOM5 ENCODE dbSUPER | 6.2 | -63.4 | -63413 | 4.8 | ZNF76 ETS1 GLIS2 ZNF143 EGR2 ZNF202 SP3 CEBPB ZNF398 CBX8 | CCDC160 GPC3 PHF6 MIR106A GC0XM134203 GC0XM134201 ENSG00000283638 |
| GH0XG134186 | 0.5 | ENCODE | 12.6 | -50.1 | -50102 | 0.2 | CTCF CBX8 PRDM6 BCL6B | CCDC160 ENSG00000283638 LARP1BP3 |
| GH0XG134187 | 0.4 | Ensembl | 12.2 | -49.7 | -49747 | 0.2 | CBX8 | CCDC160 ENSG00000283638 LARP1BP3 |
| GH0XG133793 | 0.4 | ENCODE | 10.9 | -442.6 | -442593 | 1.3 | FEZF1 | CCDC160 RPSAP63 GC0XP133898 GC0XP133897 |
| GH0XG134237 | 0.6 | ENCODE | 0.7 | +0.1 | 99 | 0.2 | MAZ RFX1 SIN3A BMI1 ZBTB40 PRDM6 GLIS2 ZBTB26 ZNF18 | CCDC160 GC0XP134244 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CCDC160 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CCDC160 Gene
- Chromosome:
- X
- Start:
- 134,237,047 bp from pter
- End:
- 134,246,207 bp from pter
- Size:
- 9,161 bases
- Orientation:
- Plus strand
Genomic View for CCDC160 Gene
Genes around CCDC160 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- Xq26.2 by Ensembl
- Xq26.2 by Entrez Gene
- Xq26.2 by HGNC
CCDC160 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CCDC160 Gene
Proteins for CCDC160 Gene
-
Protein details for CCDC160 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A6NGH7-CC160_HUMAN
- Recommended name:
- Coiled-coil domain-containing protein 160
- Protein Accession:
- A6NGH7
Protein attributes for CCDC160 Gene
- Size:
- 325 amino acids
- Molecular mass:
- 38277 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for CCDC160 Gene
Other Protein References for CCDC160 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for CCDC160
- Invitrogen Antibodies for CCDC160
- Search GeneTex for Antibodies for CCDC160
Protein Products
-
OriGene Purified Proteins for CCDC160
- Search Origene for MassSpec and Protein Over-expression Lysates for CCDC160
- Origene Custom Protein Services for CCDC160
- Novus Biologicals lysates for CCDC160
- Search GeneTex for Proteins for CCDC160
Assay Products
No data available for DME Specific Peptides for CCDC160 Gene
Domains & Families for CCDC160 Gene
Suggested Antigen Peptide Sequences for CCDC160 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
A6NGH7- Family:
-
- Belongs to the CCDC160 family.
No data available for Gene Families for CCDC160 Gene
Function for CCDC160 Gene
Phenotypes for CCDC160 Gene
- MGI mutant phenotypes for CCDC160:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for CCDC160:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC160
-
-
ViGene Biosciences lentiviral particle packaged cDNA for CCDC160 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CCDC160 gene
- Search ViGene Biosciences for CCDC160
CRISPR Products
-
OriGene CRISPR knockouts for CCDC160
-
Santa Cruz Biotechnology (SCBT) CRISPR for CCDC160
- GenScript: Design CRISPR guide RNA sequences for CCDC160
miRNA for CCDC160 Gene
- miRTarBase miRNAs that target CCDC160
-
- hsa-mir-190b (MIRT541689)
- hsa-mir-190a-5p (MIRT541690)
- hsa-mir-4714-5p (MIRT541691)
- hsa-mir-8485 (MIRT541692)
- hsa-mir-603 (MIRT541693)
- hsa-mir-3941 (MIRT609424)
- hsa-mir-3177-5p (MIRT609425)
- hsa-mir-5186 (MIRT609426)
- hsa-mir-4712-3p (MIRT609427)
- hsa-mir-362-3p (MIRT609428)
- hsa-mir-329-3p (MIRT609429)
- hsa-mir-574-5p (MIRT674109)
- hsa-mir-6867-5p (MIRT674110)
miRNA Products
- Search ViGene Biosciences for CCDC160
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CCDC160
- Browse OriGene Inhibitory RNA Products For CCDC160
-
ViGene Biosciences ready-to-package AAV shRNAs for CCDC160 gene
Clone Products
-
OriGene ORF clones in human for CCDC160
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for CCDC160
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC160
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for CCDC160
-
ViGene Biosciences adenoviral particle packaged cDNA for CCDC160 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CCDC160 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CCDC160 gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC160 Gene
Localization for CCDC160 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 3 |
| cytosol | 2 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC160 Gene
Transcripts for CCDC160 Gene
mRNA/cDNA for CCDC160 Gene
- (3) REFSEQ mRNAs :
- (1) Additional mRNA sequences :
- (1) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CCDC160 Gene
- Coiled-coil domain containing 160:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for CCDC160
-
Santa Cruz Biotechnology (SCBT) CRISPR for CCDC160
- GenScript: Design CRISPR guide RNA sequences for CCDC160
miRNA Products
- Search ViGene Biosciences for CCDC160
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CCDC160
- Browse OriGene Inhibitory RNA Products For CCDC160
-
ViGene Biosciences ready-to-package AAV shRNAs for CCDC160 gene
Clone Products
-
OriGene ORF clones in human for CCDC160
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- VectorBuilder custom plasmid, inducible vectors for CCDC160
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC160
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CCDC160 Gene
mRNA differential expression in normal tissues according to GTEx for CCDC160 Gene
This gene is overexpressed in Brain - Substantia nigra (x4.5).
NURSA nuclear receptor signaling pathways regulating expression of CCDC160 Gene:
CCDC160SOURCE GeneReport for Unigene cluster for CCDC160 Gene:
Hs.679431Primer Products
-
OriGene qPCR primer pairs for CCDC160
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC160 Gene
Orthologs for CCDC160 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | CCDC160 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | CCDC160 34 35 |
|
||
| cow (Bos Taurus) |
Mammalia | CCDC160 34 35 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Ccdc160 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Ccdc160 34 16 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | CCDC160 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | CCDC160 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100127779 34 |
|
- Species where no ortholog for CCDC160 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for CCDC160 Gene
No data available for Paralogs for CCDC160 Gene
Variants for CCDC160 Gene
| SNP ID | Clin | Chr 0X pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000040709 | -- | 134,239,483(+) | TTTGG(A/G)GACAT | intron-variant | |
| rs1000639973 | -- | 134,237,073(+) | CACCG(A/G)GCATG | upstream-variant-2KB, utr-variant-5-prime | |
| rs1000644689 | -- | 134,244,166(+) | ATTCT(A/G)TACAC | intron-variant | |
| rs1001015074 | -- | 134,243,830(+) | GTTGG(C/T)GGCTT | intron-variant | |
| rs1001344595 | -- | 134,238,257(+) | GAAGA(C/T)TTAGT | intron-variant |
Gene Damage Index Score:
0.64;
13.75% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for CCDC160 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCDC160 Gene
Disorders for CCDC160 Gene
Relevant External Links for CCDC160
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CCDC160
No disorders were found for CCDC160 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC160 Gene
Publications for CCDC160 Gene
- The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4 64
- Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z. … Shaffer J.R. (Caries Res. 2014) 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for CCDC160 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for CCDC160
- Search Origene for MassSpec and Protein Over-expression Lysates for CCDC160
- Origene Custom Protein Services for CCDC160
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CCDC160
- Browse OriGene Inhibitory RNA Products For CCDC160
- OriGene qPCR primer pairs for CCDC160
- OriGene CRISPR knockouts for CCDC160
- OriGene ORF clones in human for CCDC160
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CCDC160
- GenScript: Next-day shipping cDNA ORF clone for CCDC160 in any vector
- GenScript Custom Purified and Recombinant Proteins Services for CCDC160
- GenScript Custom Assay Services for CCDC160
- GenScript Custom overexpressing Cell Line Services for CCDC160
- GenScript: Design CRISPR guide RNA sequences for CCDC160
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CCDC160
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals Antibodies for CCDC160
- Novus Biologicals lysates for CCDC160
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Invitrogen Antibodies for CCDC160
- ViGene Biosciences adenoviral particle packaged cDNA for CCDC160 gene
- ViGene Biosciences lentiviral particle packaged cDNA for CCDC160 gene
- ViGene Biosciences ready-to-package AAV shRNAs for CCDC160 gene
- Search ViGene Biosciences for CCDC160
- Horizon Cell Lines for CCDC160
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC160
- VectorBuilder custom plasmid, inducible vectors for CCDC160
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC160
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CCDC160 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer