Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CCDC153 Gene

Aliases for CCDC153 Gene

  • Coiled-Coil Domain Containing 153 2 3 5

External Ids for CCDC153 Gene

Previous GeneCards Identifiers for CCDC153 Gene

  • GC11M118567
  • GC11M119060
  • GC11M115000

Summaries for CCDC153 Gene

GeneCards Summary for CCDC153 Gene

CCDC153 (Coiled-Coil Domain Containing 153) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC153 Gene

Genomics for CCDC153 Gene

Regulatory Elements for CCDC153 Gene

Enhancers for CCDC153 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F119683 1.6 FANTOM5 Ensembl ENCODE 4.9 -486.6 -486622 19.8 PKNOX1 ZFP64 ARID4B ZNF48 ZNF766 FOS SP5 REST TBX21 SMARCA4 CCDC153 NECTIN1 TRIM29 LOC105369525 RNU6-1123P
GH11F118433 1.4 VISTA ENCODE 5.1 +768.2 768229 8.2 PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF207 FOS RPS25 LOC101929089 TMEM25 ENSG00000254873 ATP5L ARCN1 IFT46 CCDC153 KMT2A GC11M118474
GH11F119106 1.1 ENCODE 6.2 +98.3 98307 3.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 FOS KLF13 ZNF263 HINFP LOC101929133 CCDC84 TRAPPC4 ENSG00000255121 CCDC153 DPAGT1 C2CD2L
GH11F119323 1.1 Ensembl ENCODE 5 -117.3 -117316 0.8 CBX3 RAD21 CHAMP1 GATA2 ZNF143 RCOR1 EGR2 SMARCA5 ZNF654 MIER1 IFT46 CCDC153 ENSG00000252119 GC11M119332
GH11F118529 1.1 ENCODE 4.5 +675.4 675364 3.3 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF548 ENSG00000254909 UBE4A RPL23AP64 BCL9L ENSG00000254428 ARCN1 RPS25 C1QTNF5 CCDC153 DDX6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC153 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC153 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000321943 -514 2801 WRNIP1 ZNF76 SIN3A RAD21 GLIS2 EGR1 ZNF143 KLF7 CREM EGR2

Genomic Location for CCDC153 Gene

119,189,638 bp from pter
119,206,286 bp from pter
16,649 bases
Minus strand

Genomic View for CCDC153 Gene

Genes around CCDC153 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC153 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC153 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC153 Gene

Proteins for CCDC153 Gene

  • Protein details for CCDC153 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 153
    Protein Accession:

    Protein attributes for CCDC153 Gene

    210 amino acids
    Molecular mass:
    23858 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC153 Gene


neXtProt entry for CCDC153 Gene

Post-translational modifications for CCDC153 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC153 Gene

Domains & Families for CCDC153 Gene

Protein Domains for CCDC153 Gene


Suggested Antigen Peptide Sequences for CCDC153 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the UPF0610 family.
  • Belongs to the UPF0610 family.
genes like me logo Genes that share domains with CCDC153: view

No data available for Gene Families for CCDC153 Gene

Function for CCDC153 Gene

Gene Ontology (GO) - Molecular Function for CCDC153 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CCDC153: view

Phenotypes for CCDC153 Gene

GenomeRNAi human phenotypes for CCDC153:
genes like me logo Genes that share phenotypes with CCDC153: view

Animal Model Products

miRNA for CCDC153 Gene

miRTarBase miRNAs that target CCDC153

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC153 Gene

Localization for CCDC153 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC153 gene
Compartment Confidence
nucleus 3
cytosol 3
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC153 Gene

Pathways & Interactions for CCDC153 Gene

SuperPathways for CCDC153 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC153 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC153 Gene

Transcripts for CCDC153 Gene

mRNA/cDNA for CCDC153 Gene

(13) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC153 Gene

Coiled-coil domain containing 153:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC153 Gene

No ASD Table

Relevant External Links for CCDC153 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC153 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC153 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CCDC153 Gene

This gene is overexpressed in Pituitary (x6.1) and Testis (x5.5).

Protein differential expression in normal tissues from HIPED for CCDC153 Gene

This gene is overexpressed in Adipocyte (33.2), Heart (26.9), and Pancreatic juice (8.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC153 Gene

Protein tissue co-expression partners for CCDC153 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCDC153 Gene:


SOURCE GeneReport for Unigene cluster for CCDC153 Gene:

genes like me logo Genes that share expression patterns with CCDC153: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for CCDC153 Gene

Orthologs for CCDC153 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC153 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCDC153 34 35
  • 99.21 (n)
(Canis familiaris)
Mammalia CCDC153 34 35
  • 81.74 (n)
(Mus musculus)
Mammalia Ccdc153 34 16 35
  • 78.73 (n)
(Rattus norvegicus)
Mammalia Ccdc153 34
  • 78.73 (n)
(Bos Taurus)
Mammalia CCDC153 34 35
  • 76.88 (n)
(Monodelphis domestica)
Mammalia CCDC153 35
  • 59 (a)
(Gallus gallus)
Aves CCDC153 34 35
  • 57.29 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc153 34
  • 50.17 (n)
(Danio rerio)
Actinopterygii ccdc153 34 35
  • 47.91 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 35 (a)
Species where no ortholog for CCDC153 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC153 Gene

Gene Tree for CCDC153 (if available)
Gene Tree for CCDC153 (if available)

Paralogs for CCDC153 Gene

No data available for Paralogs for CCDC153 Gene

Variants for CCDC153 Gene

Sequence variations from dbSNP and Humsavar for CCDC153 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs371567712 Likely benign 119,206,429(+) GGCAA(C/T)GTGAA upstream-variant-2KB, reference, synonymous-codon
rs878854755 Likely benign 119,206,622(+) AAGGC(A/C)GGCTG intron-variant, upstream-variant-2KB
rs730880433 Uncertain significance 119,206,542(+) CCACC(A/T)CCTCA upstream-variant-2KB, reference, missense
rs730880426 Benign 119,206,542(+) CCACC(-/ACC)TCAGC upstream-variant-2KB, cds-indel
rs397507488 other 119,206,544(+) CCACC(-/ACC)TCAGC upstream-variant-2KB, cds-indel

Structural Variations from Database of Genomic Variants (DGV) for CCDC153 Gene

Variant ID Type Subtype PubMed ID
nsv556468 CNV loss 21841781
nsv556467 CNV loss 21841781
esv3627886 CNV loss 21293372

Variation tolerance for CCDC153 Gene

Residual Variation Intolerance Score: 89.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.33; 76.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC153 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC153 Gene

Disorders for CCDC153 Gene

Relevant External Links for CCDC153

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC153 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC153 Gene

Publications for CCDC153 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for CCDC153 Gene

Sources for CCDC153 Gene

Loading form....