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Aliases for CCDC152 Gene

Aliases for CCDC152 Gene

  • Coiled-Coil Domain Containing 152 2 3
  • Coiled-Coil Domain-Containing Protein 152 3
  • CH5400 3

External Ids for CCDC152 Gene

Previous GeneCards Identifiers for CCDC152 Gene

  • GC05P042793

Summaries for CCDC152 Gene

GeneCards Summary for CCDC152 Gene

CCDC152 (Coiled-Coil Domain Containing 152) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC152 Gene

Genomics for CCDC152 Gene

Regulatory Elements for CCDC152 Gene

Genomic Location for CCDC152 Gene

Start:
42,756,801 bp from pter
End:
42,802,437 bp from pter
Size:
45,637 bases
Orientation:
Plus strand

Genomic View for CCDC152 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC152 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC152 Gene

Proteins for CCDC152 Gene

  • Protein details for CCDC152 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4G0S7-CC152_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 152
    Protein Accession:
    Q4G0S7
    Secondary Accessions:
    • B3KXI4
    • B4E0P7
    • Q5BLP6

    Protein attributes for CCDC152 Gene

    Size:
    254 amino acids
    Molecular mass:
    29979 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH39102.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC152 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC152 Gene

Proteomics data for CCDC152 Gene at MOPED

Post-translational modifications for CCDC152 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC152 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC152 Gene

Domains for CCDC152 Gene

Protein Domains for CCDC152 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC152 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC152: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC152 Gene

Function for CCDC152 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC152 Gene

Localization for CCDC152 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC152 Gene COMPARTMENTS Subcellular localization image for CCDC152 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC152 Gene

Pathways for CCDC152 Gene

SuperPathways for CCDC152 Gene

No Data Available

Interacting Proteins for CCDC152 Gene

Gene Ontology (GO) - Biological Process for CCDC152 Gene

None

No data available for Pathways by source for CCDC152 Gene

Transcripts for CCDC152 Gene

mRNA/cDNA for CCDC152 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC152

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CCDC152
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC152 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c · 11d · 11e · 11f · 11g · 11h · 11i
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - - - - - -
SP4: - - - - - - - -
SP5: - - - - -
SP6: - - - - - - -
SP7: - - - - - - -
SP8: - - - - - - - - -
SP9: - - - -
SP10: - - - - - - - -
SP11: - - - -
SP12: - - - - - - - - - - -
SP13: - - -
SP14: -
SP15: - - - - - - - -

Relevant External Links for CCDC152 Gene

GeneLoc Exon Structure for
CCDC152
ECgene alternative splicing isoforms for
CCDC152

Expression for CCDC152 Gene

mRNA expression in normal human tissues for CCDC152 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC152 Gene

mRNA Expression by UniProt/SwissProt for CCDC152 Gene

Q4G0S7-CC152_HUMAN
Tissue specificity: Detected in stomach.
genes like me logo Genes that share expressions with CCDC152: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for CCDC152 Gene

Orthologs for CCDC152 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC152 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC152 35
  • 99.61 (n)
  • 100 (a)
CCDC152 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC152 35
  • 88.19 (n)
  • 81.1 (a)
CCDC152 36
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC152 35
  • 90.68 (n)
  • 85.43 (a)
CCDC152 36
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc152 35
  • 83.73 (n)
  • 76.77 (a)
Ccdc152 16
Ccdc152 36
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC152 36
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC152 36
  • 43 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc152 35
  • 83.33 (n)
  • 77.17 (a)
chicken
(Gallus gallus)
Aves CCDC152 35
  • 70.19 (n)
  • 63.01 (a)
CCDC152 36
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC152 36
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc152 35
  • 61.25 (n)
  • 49.59 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC101886863 35
  • 54.21 (n)
  • 42.99 (a)
Species with no ortholog for CCDC152:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC152 Gene

ENSEMBL:
Gene Tree for CCDC152 (if available)
TreeFam:
Gene Tree for CCDC152 (if available)

Paralogs for CCDC152 Gene

No data available for Paralogs for CCDC152 Gene

Variants for CCDC152 Gene

Sequence variations from dbSNP and Humsavar for CCDC152 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs189123 -- 42,798,132(+) GGCAA(C/T)AGAAC intron-variant
rs230807 -- 42,793,729(+) tcagc(C/T)tcctg intron-variant
rs230808 -- 42,793,751(+) ccaca(A/G)gcacg intron-variant
rs230809 -- 42,795,791(+) cacgc(A/G)tatgt intron-variant
rs230810 -- 42,796,007(+) acacc(A/G)catgt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC152 Gene

Variant ID Type Subtype PubMed ID
nsv462126 CNV Gain 19166990
nsv523033 CNV Gain 19592680

Relevant External Links for CCDC152 Gene

HapMap Linkage Disequilibrium report
CCDC152

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC152 Gene

Disorders for CCDC152 Gene

No disorders were found for CCDC152 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC152 Gene

Publications for CCDC152 Gene

  1. Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes. (PMID: 15809229) Castelo R. … Eyras E. (Nucleic Acids Res. 2005) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CCDC152 Gene

Sources for CCDC152 Gene

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