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Aliases for CCDC152 Gene

Aliases for CCDC152 Gene

  • Coiled-Coil Domain Containing 152 2 3 5
  • Coiled-Coil Domain-Containing Protein 152 3
  • CH5400 3

External Ids for CCDC152 Gene

Previous GeneCards Identifiers for CCDC152 Gene

  • GC05P042793

Summaries for CCDC152 Gene

GeneCards Summary for CCDC152 Gene

CCDC152 (Coiled-Coil Domain Containing 152) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC152 Gene

Genomics for CCDC152 Gene

Regulatory Elements for CCDC152 Gene

Enhancers for CCDC152 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G042807 1.3 Ensembl ENCODE 19.7 +54.0 53990 7.1 FOXA2 MLX ZFP64 ARID4B DMAP1 YY1 PAF1 SP3 SP5 MXD4 CCDC152 SELENOP LOC402213 GHR LOC648987 ENSG00000272234
GH05G042850 0.9 ENCODE 14.4 +96.8 96762 5.3 ELF3 FOXA2 FEZF1 RAD21 YY1 RARA TCF12 GATA2 ZNF350 MIXL1 CCDC152 SELENOP LOC402213 GHR ENSG00000272234
GH05G042806 0.6 ENCODE 20.3 +49.6 49612 0.6 PAF1 HNRNPUL1 SUPT20H ZFHX2 ZNF512 HNRNPL EGR2 RBFOX2 CCDC152 SELENOP LOC402213 GHR ENSG00000272234
GH05G042621 0.9 Ensembl dbSUPER 11.3 -135.1 -135101 1.4 NFIB MAX TEAD2 ELF1 CEBPG NR2F2 FOSL1 NFIC ATF3 PBX2 CCDC152 GC05M042543 PIR62948
GH05G042842 0.7 ENCODE 14.3 +86.7 86743 1.2 MAFG MAX CEBPG NR2F2 YY1 ZNF316 HNF1A ATF4 CEBPA NFE2 CCDC152 ENSG00000272234 SELENOP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC152 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC152 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000180130 300 1000 CBX3 RB1 ZBTB40 CHAMP1 ETS1 EGR1 CBX5 ETV6 HCFC1 SMAD5

Genomic Location for CCDC152 Gene

Chromosome:
5
Start:
42,756,801 bp from pter
End:
42,802,437 bp from pter
Size:
45,637 bases
Orientation:
Plus strand

Genomic View for CCDC152 Gene

Genes around CCDC152 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC152 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC152 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC152 Gene

Proteins for CCDC152 Gene

  • Protein details for CCDC152 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4G0S7-CC152_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 152
    Protein Accession:
    Q4G0S7
    Secondary Accessions:
    • B3KXI4
    • B4E0P7
    • Q5BLP6

    Protein attributes for CCDC152 Gene

    Size:
    254 amino acids
    Molecular mass:
    29979 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH39102.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC152 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC152 Gene

Post-translational modifications for CCDC152 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC152 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC152 Gene

Domains & Families for CCDC152 Gene

Protein Domains for CCDC152 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC152 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC152: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC152 Gene

Function for CCDC152 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC152 Gene

Localization for CCDC152 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC152 gene
Compartment Confidence
nucleus 4
cytosol 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC152 Gene

Pathways & Interactions for CCDC152 Gene

SuperPathways for CCDC152 Gene

No Data Available

Interacting Proteins for CCDC152 Gene

Selected Interacting proteins: Q4G0S7-CC152_HUMAN for CCDC152 Gene via IID

Symbol External ID(s) Details
FAM161B
PRR11

Gene Ontology (GO) - Biological Process for CCDC152 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC152 Gene

Drugs & Compounds for CCDC152 Gene

No Compound Related Data Available

Transcripts for CCDC152 Gene

mRNA/cDNA for CCDC152 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC152 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c · 11d · 11e · 11f · 11g · 11h · 11i
SP1: - - - - - -
SP2: - - - - - -
SP3: - - - - - - - -
SP4: - - - - - - - -
SP5: - - - - -
SP6: - - - - - - -
SP7: - - - - - - -
SP8: - - - - - - - - -
SP9: - - - -
SP10: - - - - - - - -
SP11: - - - -
SP12: - - - - - - - - - - -
SP13: - - -
SP14: -
SP15: - - - - - - - -

Relevant External Links for CCDC152 Gene

GeneLoc Exon Structure for
CCDC152
ECgene alternative splicing isoforms for
CCDC152

Expression for CCDC152 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC152 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CCDC152 Gene

This gene is overexpressed in Tonsil (29.7), Oral epithelium (20.4), and Monocytes (11.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC152 Gene



NURSA nuclear receptor signaling pathways regulating expression of CCDC152 Gene:

CCDC152

mRNA Expression by UniProt/SwissProt for CCDC152 Gene:

Q4G0S7-CC152_HUMAN
Tissue specificity: Detected in stomach.
genes like me logo Genes that share expression patterns with CCDC152: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC152 Gene

Orthologs for CCDC152 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC152 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC152 34 35
  • 99.61 (n)
dog
(Canis familiaris)
Mammalia CCDC152 34 35
  • 90.68 (n)
cow
(Bos Taurus)
Mammalia CCDC152 34 35
  • 88.19 (n)
mouse
(Mus musculus)
Mammalia Ccdc152 34 16 35
  • 83.73 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc152 34
  • 83.33 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC152 35
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC152 35
  • 43 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC152 34 35
  • 70.19 (n)
lizard
(Anolis carolinensis)
Reptilia CCDC152 35
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc152 34
  • 61.25 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC101886863 34
  • 54.21 (n)
Species where no ortholog for CCDC152 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC152 Gene

ENSEMBL:
Gene Tree for CCDC152 (if available)
TreeFam:
Gene Tree for CCDC152 (if available)

Paralogs for CCDC152 Gene

No data available for Paralogs for CCDC152 Gene

Variants for CCDC152 Gene

Sequence variations from dbSNP and Humsavar for CCDC152 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000043725 -- 42,780,216(+) GCTTT(C/T)AACTT intron-variant
rs1000082216 -- 42,790,035(+) AAGGC(A/G)ATCCA intron-variant
rs1000135604 -- 42,767,698(+) AGCCA(A/C)CTTGT intron-variant
rs1000148916 -- 42,776,392(+) GACAT(A/G)AAATT intron-variant
rs1000276238 -- 42,796,119(+) ATAGC(A/T)TTAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC152 Gene

Variant ID Type Subtype PubMed ID
dgv5637n100 CNV gain 25217958
esv3604874 CNV gain 21293372
nsv462126 CNV gain 19166990
nsv523033 CNV gain 19592680
nsv597886 CNV gain 21841781
nsv597925 CNV gain 21841781

Variation tolerance for CCDC152 Gene

Gene Damage Index Score: 1.75; 33.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC152 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC152

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC152 Gene

Disorders for CCDC152 Gene

Relevant External Links for CCDC152

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC152

No disorders were found for CCDC152 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC152 Gene

Publications for CCDC152 Gene

  1. Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes. (PMID: 15809229) Castelo R. … Eyras E. (Nucleic Acids Res. 2005) 3 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64
  3. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CCDC152 Gene

Sources for CCDC152 Gene

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