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CCDC151 Gene

protein-coding   GIFtS: 45
GCID: GC19M011531

Coiled-Coil Domain Containing 151

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Coiled-Coil Domain Containing 1511 2
Coiled-Coil Domain-Containing Protein 1512

External Ids:    HGNC: 283031   Entrez Gene: 1159482   Ensembl: ENSG000001980037   UniProtKB: A5D8V73   

Export aliases for CCDC151 gene to outside databases

Previous GC identifers: GC19M011393 GC19M011106


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CCDC151 Gene:
CCDC151 (coiled-coil domain containing 151) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011295.12  
Regulatory elements:
   Regulatory transcription factor binding sites in the CCDC151 gene promoter:
         E2F-4   E2F-3a   USF1   E2F-5   AML1a   E2F-2   GATA-1   E2F   E2F-1   USF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC151 promoter sequence
   Search Chromatin IP Primers for CCDC151

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC151


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.2   Ensembl cytogenetic band:  19p13.2   HGNC cytogenetic band: 19p13.2

CCDC151 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC151 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M011531:  view genomic region     (about GC identifiers)

Start:
11,531,272 bp from pter      End:
11,546,603 bp from pter
Size:
15,332 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: CC151_HUMAN, A5D8V7 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 151  
Size: 595 amino acids; 69140 Da
Secondary accessions: Q96CG5

Explore the universe of human proteins at neXtProt for CCDC151: NX_A5D8V7

Explore proteomics data for CCDC151 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CCDC151 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_659482.3  
    ENSEMBL proteins: 
     ENSP00000348757   ENSP00000467313   ENSP00000466800   ENSP00000467429   ENSP00000442987  

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    antibodies-online proteins for CCDC151 

     
    antibodies-online peptides for CCDC151

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: A5D8V7


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
         
    Find genes that share ontologies with CCDC151           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for CCDC151:
     Increased cell number in G2M,  

         1 MGI phenotypic allele for Ccdc151 (no phenotypes)

    Find genes that share phenotypes with CCDC151           About GenesLikeMe

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for CCDC151

    miRNA
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    miRTarBase miRNAs that target CCDC151:
    hsa-mir-10a-5p (MIRT047513)

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    3 qRT-PCR Assays for microRNAs that regulate CCDC151:
    hsa-miR-4318 hsa-miR-296-5p hsa-miR-892a
    SwitchGear 3'UTR luciferase reporter plasmidCCDC151 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2
    mitochondrion1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCDC151
    Interactions:

        Search GeneGlobe Interaction Network for CCDC151

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    4 Interacting proteins for CCDC151 (A5D8V71 ENSP000003487574) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    KDM1AO603411EBI-8466445,EBI-710124
    SUV39H1O434631EBI-8466445,EBI-349968
    NCAM1ENSP000003184724STRING: ENSP00000318472
    NCAM2ENSP000003833924STRING: ENSP00000383392
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CCDC151 (CC151)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CCDC151 gene: 
    NM_145045.4  

    Unigene Cluster for CCDC151:

    Coiled-coil domain containing 151
    Hs.124010  [show with all ESTs]
    Unigene Representative Sequence: BC036041
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000356392(uc002mrs.3 uc010dxz.3) ENST00000591345 ENST00000591179
    ENST00000586836 ENST00000593281 ENST00000545100(uc002mrr.3)
    miRNA
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    3 qRT-PCR Assays for microRNAs that regulate CCDC151:
    hsa-miR-4318 hsa-miR-296-5p hsa-miR-892a
    SwitchGear 3'UTR luciferase reporter plasmidCCDC151 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat CCDC151
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat CCDC151
      QuantiFast Probe-based Assays in human, mouse, rat CCDC151

    Additional mRNA sequence: 

    AK056363.1 AK294355.1 AK302113.1 AK308072.1 BC014252.2 BC036041.1 BC050355.1 BC141828.1 
    BC142637.1 BC144421.1 

    2 DOTS entries:

    DT.205735  DT.100742566 

    Selected AceView cDNA sequences (see all 33):

    BE256890 BG394371 BX090543 BE257917 AI686018 BG330074 AW135078 BC014252 
    AK056363 BM931269 NM_145045 BG395281 BE252751 BI548500 BC036041 BM800810 
    AI684708 BI859937 BC050355 AW104143 BI819370 BE672589 AI807422 AW665854 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CCDC151 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TACCAGATGG
    CCDC151 Expression
    About this image


    CCDC151 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Paraxial Mesoderm (Gastrulation Derivatives)
             PureStem 7PEND24, NCr-fac & Meso-prx Progenitor
     
     Neural Crest (Gastrulation Derivatives)
             PureStem 7PEND24, NCr-fac & Meso-prx Progenitor
     
     Bone (Muscoskeletal System)
             TGFbeta3+BMP7-induced chondrocytes
     
     Cartilage (Muscoskeletal System)
             TGFbeta3+BMP7-induced chondrocytes
    CCDC151 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CCDC151 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.124010
        Custom PCR Arrays for CCDC151
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC151

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for CCDC151 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc1511 , 5 coiled-coil domain containing 1511, 5 75.5(n)1
    67.4(a)1
      9 (8.01 cM)5
    776091  NM_001163787.11  NP_001157259.11 
     219898715 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC1516
    coiled-coil domain containing 151
    40(a)
    1 ↔ 1
    2(78867859-78901247)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia ccdc1511 coiled-coil domain containing 151 56.94(n)
    45.27(a)
      100145237  XM_004918897.1  XP_004918954.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ccdc1511 coiled-coil domain containing 151 52.63(n)
    40(a)
      555601  NM_001077369.2  NP_001070837.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG141276
    --
    21(a)
    1 ↔ 1
    3L(11874484-11876646)


    ENSEMBL Gene Tree for CCDC151 (if available)
    TreeFam Gene Tree for CCDC151 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CCDC151 gene
    2 SIMAP similar genes for CCDC151 using alignment to 6 protein entries:     CC151_HUMAN (see all proteins):
    PARK2    ZNF257

    Find genes that share paralogs with CCDC151           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CCDC151 (see all 267)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs2013002381,2
    C--11532298(+) ACCCAG/ACCCTA 1 -- int11Minor allele frequency- A:0.00EU 593
    rs1511107151,2
    C--11532383(+) CACGTC/TGTGGC 2 N D mis10--------
    rs771335871,2
    C,F--11532434(+) GAGGCC/TCAGCA 2 S G mis11Minor allele frequency- T:0.05WA 118
    rs1410844931,2
    --11532553(+) GGAAGA/GCTCCA 1 -- int10--------
    rs1836566091,2
    C--11532662(+) GCCACA/GTCTGT 1 -- int10--------
    rs1878655571,2
    --11532671(+) GTGATG/TGGGGA 1 -- int10--------
    rs763301441,2
    F--11532720(+) AGGCCT/GCTTGG 1 -- int11Minor allele frequency- G:0.05WA 118
    rs1112671831,2
    F--11532779(+) AATGGC/TCCTCT 1 -- int11Minor allele frequency- T:0.50CSA 2
    rs1439810091,2
    C--11533024(+) ACAGA-/GGATGT 1 -- int10--------
    rs178511251,2
    C--11533165(+) GCTGGC/ACAGGT 2 /A /S mis1 ese32Minor allele frequency- A:0.00NA 4

    HapMap Linkage Disequilibrium report for CCDC151 (11531272 - 11546603 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for CCDC151:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2718178CNV Deletion23290073
    esv2718179CNV Deletion23290073
    nsv833752CNV Loss17160897
    nsv911062CNV Loss21882294
    nsv519802CNV Loss19592680

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing CCDC151
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC151

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CCDC151 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with CCDC151)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The coiled-coil domain containing protein CCDC151 is required for the function of IFT-dependent motile cilia in animals. (PubMed id 24067530)1, 3 Jerber J....Durand B. (Hum. Mol. Genet. 2014)
    2. A Y2H-seq approach defines the human protein methyltransferase interactome. (PubMed id 23455924)1 Weimann M.... Stelzl U. (Nat. Methods 2013)
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    4. The DNA sequence and biology of human chromosome 19. (PubMed id 15057824)2 Grimwood J.... Lucas S.M. (Nature 2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 115948 HGNC: 28303 AceView: MGC20983 Ensembl:ENSG00000198003 euGenes: HUgn115948
    ECgene: CCDC151 H-InvDB: CCDC151

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CCDC151 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CCDC151 gene:
    Search GeneIP for patents involving CCDC151

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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