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Aliases for CCDC150 Gene

Aliases for CCDC150 Gene

  • Coiled-Coil Domain Containing 150 2 3 5

External Ids for CCDC150 Gene

Previous GeneCards Identifiers for CCDC150 Gene

  • GC02P197214
  • GC02P197504
  • GC02P189356

Summaries for CCDC150 Gene

GeneCards Summary for CCDC150 Gene

CCDC150 (Coiled-Coil Domain Containing 150) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC150 Gene

Genomics for CCDC150 Gene

Regulatory Elements for CCDC150 Gene

Promoters for CCDC150 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CCDC150 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC150 Gene

Chromosome:
2
Start:
196,639,554 bp from pter
End:
196,763,490 bp from pter
Size:
123,937 bases
Orientation:
Plus strand

Genomic View for CCDC150 Gene

Genes around CCDC150 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC150 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC150 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC150 Gene

Proteins for CCDC150 Gene

  • Protein details for CCDC150 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NCX0-CC150_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 150
    Protein Accession:
    Q8NCX0
    Secondary Accessions:
    • Q6P5U6
    • Q6P663
    • Q8N8V5

    Protein attributes for CCDC150 Gene

    Size:
    1101 amino acids
    Molecular mass:
    128761 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH62658.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC150 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC150 Gene

Proteomics data for CCDC150 Gene at MOPED

Post-translational modifications for CCDC150 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC150 Gene

No data available for DME Specific Peptides for CCDC150 Gene

Domains & Families for CCDC150 Gene

Protein Domains for CCDC150 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC150: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC150 Gene

Function for CCDC150 Gene

Phenotypes for CCDC150 Gene

genes like me logo Genes that share phenotypes with CCDC150: view

Animal Model Products

CRISPR Products

miRNA for CCDC150 Gene

miRTarBase miRNAs that target CCDC150

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC150 Gene

Localization for CCDC150 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC150 Gene COMPARTMENTS Subcellular localization image for CCDC150 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC150 Gene

Pathways & Interactions for CCDC150 Gene

SuperPathways for CCDC150 Gene

No Data Available

Interacting Proteins for CCDC150 Gene

Gene Ontology (GO) - Biological Process for CCDC150 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC150 Gene

Drugs & Compounds for CCDC150 Gene

No Compound Related Data Available

Transcripts for CCDC150 Gene

Unigene Clusters for CCDC150 Gene

Coiled-coil domain containing 150:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC150 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9
SP1: -
SP2: - - - -
SP3:
SP4: -

Relevant External Links for CCDC150 Gene

GeneLoc Exon Structure for
CCDC150
ECgene alternative splicing isoforms for
CCDC150

Expression for CCDC150 Gene

mRNA expression in normal human tissues for CCDC150 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC150 Gene

This gene is overexpressed in Testis (x17.1).

Protein differential expression in normal tissues from HIPED for CCDC150 Gene

This gene is overexpressed in Vitreous humor (29.4), Bone marrow stromal cell (28.7), and Cardia (7.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC150 Gene



SOURCE GeneReport for Unigene cluster for CCDC150 Gene Hs.132519

genes like me logo Genes that share expression patterns with CCDC150: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CCDC150 Gene

Orthologs for CCDC150 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC150 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC150 35
  • 99.3 (n)
  • 98.73 (a)
CCDC150 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC150 36
  • 80 (a)
OneToOne
CCDC150 35
  • 81.93 (n)
  • 76.74 (a)
dog
(Canis familiaris)
Mammalia CCDC150 35
  • 88.39 (n)
  • 85.29 (a)
CCDC150 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc150 16
Ccdc150 36
  • 76 (a)
OneToOne
Ccdc150 35
  • 82.2 (n)
  • 77.34 (a)
oppossum
(Monodelphis domestica)
Mammalia CCDC150 36
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC150 36
  • 42 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc150 35
  • 82.01 (n)
  • 77.35 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC150 36
  • 50 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc150 35
  • 53.61 (n)
  • 41.06 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100534986 35
  • 50 (n)
  • 37.26 (a)
CCDC150 36
  • 23 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1101 36
  • 28 (a)
OneToOne
Species with no ortholog for CCDC150:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC150 Gene

ENSEMBL:
Gene Tree for CCDC150 (if available)
TreeFam:
Gene Tree for CCDC150 (if available)

Paralogs for CCDC150 Gene

Pseudogenes.org Pseudogenes for CCDC150 Gene

genes like me logo Genes that share paralogs with CCDC150: view

No data available for Paralogs for CCDC150 Gene

Variants for CCDC150 Gene

Sequence variations from dbSNP and Humsavar for CCDC150 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs34133636 - 196,657,026(+) ATCTC(A/G)AAGTT nc-transcript-variant, reference, missense, utr-variant-5-prime
rs1114164 -- 196,696,528(-) TCTGT(C/T)AAAGT intron-variant
rs1533659 -- 196,641,689(+) ccgcc(C/T)cattg intron-variant
rs1533660 -- 196,644,582(-) TGGGG(C/T)TCCTC intron-variant, upstream-variant-2KB
rs1519678 -- 196,656,528(+) tcact(C/T)TCCAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC150 Gene

Variant ID Type Subtype PubMed ID
nsv3096 CNV Insertion 18451855
esv992569 CNV Insertion 20482838
esv1075947 CNV Insertion 17803354

Variation tolerance for CCDC150 Gene

Residual Variation Intolerance Score: 92.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.17; 84.76% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC150 Gene

HapMap Linkage Disequilibrium report
CCDC150

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC150 Gene

Disorders for CCDC150 Gene

Relevant External Links for CCDC150

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC150

No disorders were found for CCDC150 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC150 Gene

Publications for CCDC150 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CCDC150 Gene

Sources for CCDC150 Gene

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