CCDC150 Gene
protein-coding GIFtS: 35
GCID: GC02P197504
|
|
coiled-coil domain containing 150
| |
Aliases
for CCDC150 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Coiled-Coil Domain Containing 1501 2 | | FLJ396601 | | Coiled-Coil Domain-Containing Protein 1502 |
Export aliases for CCDC150 gene to outside databasesPrevious GC identifers: GC02P197214 GC02P189356 |
Summaries
for CCDC150 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for CCDC150 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000002.11 NC_018913.1 NT_005403.17
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the CCDC150 gene promoter:
TBP Pax-5 FOXO3 RORalpha2 FOXO3b Ik-2 POU2F1b POU2F1a FOXO3a POU2F1c
Other transcription factors
Search SABiosciences Chromatin IP Primers for CCDC150
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC150 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2q33.1 Ensembl cytogenetic band: 2q33.1 HGNC cytogenetic band: 2q33.1CCDC150 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02P197504: view genomic region
(about GC identifiers)
Start:
|
197,504,278 bp from pter |
End:
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197,628,214 bp from pter |
Size:
|
123,937 bases |
Orientation:
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plus strand |
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Proteins
for CCDC150 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CC150_HUMAN, Q8NCX0 (See
protein sequence)Recommended Name: Coiled-coil domain-containing protein 150 Size: 1101 amino acids; 128761 Da
Sequence caution: Sequence=AAH62658.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-Asequence;
Secondary accessions: Q6P5U6 Q6P663 Q8N8V5Alternative splicing: 4 isoforms: Q8NCX0-1 Q8NCX0-2 Q8NCX0-3 Q8NCX0-4 Explore the universe of human proteins at neXtProt for CCDC150: NX_Q8NCX0
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8NCX0
CCDC150 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_001074008.1
ENSEMBL proteins: ENSP00000389008 ENSP00000373827 ENSP00000396153 ENSP00000387257 ENSP00000413957 ENSP00000441149 ENSP00000272831 ENSP00000393634
Human Recombinant Protein Products for CCDC150:
CCDC150 Antibody Products:
Assay Products for CCDC150: |
Protein
Domains /
Families
for CCDC150 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| ProtoNet protein and cluster: Q8NCX0 |
Function
for CCDC150 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Phenotypes:
1 GenomeRNAi human phenotype for CCDC150:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC150 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC150 (see all 3)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: CCDC150 (NM_001080539) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCDC150 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC150 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC150 |
|
Pathways & Interactions
for CCDC150 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC150
|
Drugs & Compounds
for CCDC150 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CCDC150
Search CenterWatch for drugs/clinical trials and news about CCDC150 / CC150
|
Transcripts
for CCDC150 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CCDC150 gene (3 alternative transcripts): NM_001080539.1 NM_173466.1 NM_173646.1 Unigene Cluster for CCDC150: Coiled-coil domain containing 150 Hs.132519 [show with all ESTs]Unigene Representative Sequence: NM_00108053918/22 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 22): ENST00000431807 ENST00000471546(uc002uto.1) ENST00000389175(uc002utp.1 uc010zgs.1)
ENST00000471033 ENST00000498512 ENST00000495513 ENST00000497159 ENST00000469429
ENST00000494389 ENST00000460114 ENST00000424427 ENST00000409270 ENST00000448409(uc010zgt.1)
ENST00000461825 ENST00000465092 ENST00000463826(uc002utq.1) ENST00000487663(uc002utr.1)
ENST00000461243
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC150 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC150 (see all 3)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: CCDC150 (NM_001080539) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CCDC150 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC150 |
Additional cDNA sequence: AK001064.1 AK096130.1 AK096979.1 AK125768.1 AK299214.1 AK301665.1 AK302685.1 AK303236.1 AK309349.1 BC062449.1 BC062658.1 10 DOTS entries: DT.40128919 DT.101979576 DT.100800045 DT.100649557 DT.100008471 DT.92421940 DT.403049 DT.92012997 DT.40129354 DT.95086079 24/55 AceView cDNA sequences (see all 55): AI025053 BX118969 BU521851 AK096130 AU145475 AI203069 CD358832 BE672583 AA887526 BF110432 AI733091 AL834537 AI791584 AI471843 AK125768 BX343210 BX370739 NM_173646 BP872039 BX343209 BC062658 AI825349 NM_173466 AW300223
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC150 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 |
|---|
|
| SP1: | | | | | | | - | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | - | | - | | | | | | | | | | | | - | | - | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | - | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for CCDC150
|
Expression
for CCDC150 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CCDC150 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAGTCTTTGA
About this image
See CCDC150 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CCDC150
SOURCE GeneReport for Unigene cluster: Hs.132519
SABiosciences Custom PCR Arrays for CCDC150
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC150
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CCDC150 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC150 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC150 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC150 |
Orthologs
for CCDC150 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for CCDC150 gene from 3/13 species (see all 13) About this table
ENSEMBL Gene Tree for CCDC150 (if available)
TreeFam Gene Tree for CCDC150 (if available) |
Paralogs
for CCDC150 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CCDC150 gene
CCDC150 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for CCDC150
PGOHUM00000239595
|
Genomic Variants
for CCDC150 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 2 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for CCDC150 (197504278 - 197628214 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CCDC150: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCDC150 |
|
Disorders
/ Diseases
for CCDC150 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
| -- |
Publications
for CCDC150 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CCDC150 gene integrated from 9 sources:
(articles sorted by number of sources associating them with CCDC150) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W....Wilson R.K. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for CCDC150 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing CCDC150 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CCDC150 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CCDC150 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for CCDC150 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for CCDC150 gene:
Search GeneIP for patents involving CCDC150
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CCDC150 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for CCDC150 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for CCDC150 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CCDC150 | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for CCDC150 | | OriGene 3'-UTR Clone for CCDC150 | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC150 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CCDC150 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for CCDC150 | | OriGene Custom Protein Services for CCDC150 | | | OriGene Custom Immunoassay Development | | |
| |
 |
 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CCDC150 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CCDC150 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC150 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC150 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC150 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC150 |
| |
 |  |  |  | |
| | | | Search Tocris compounds for CCDC150 |
| |  |  |  |  | | | | |
 |
 |
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 | | | CCDC150 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC150 |
|  |  |  |  | | | | Search ThermoFisher Antibodies for CCDC150 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC150 |
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