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Aliases for CCDC148-AS1 Gene

Subcategory (RNA class) for CCDC148-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC148-AS1 Gene

  • CCDC148 Antisense RNA 1 2 3 5
  • CCDC148 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Tmp_locus_26 3

External Ids for CCDC148-AS1 Gene

Previous GeneCards Identifiers for CCDC148-AS1 Gene

  • GC02P159024

Summaries for CCDC148-AS1 Gene

GeneCards Summary for CCDC148-AS1 Gene

CCDC148-AS1 (CCDC148 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC148-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC148-AS1 Gene

Genomics for CCDC148-AS1 Gene

Regulatory Elements for CCDC148-AS1 Gene

Enhancers for CCDC148-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H158213 1.2 Ensembl ENCODE 8.5 +47.9 47861 1 ELF3 PKNOX1 FOXA2 ATF1 ARNT ZNF133 ARID4B FEZF1 RAD21 RARA RN7SL393P CCDC148 PKP4 CCDC148-AS1 HNRNPDLP2
GH02H158217 0.2 Ensembl 7 +51.3 51251 0 CCDC148-AS1 HNRNPDLP2
GH02H158190 1.2 Ensembl ENCODE 0.3 +24.7 24744 1 FOXA2 ATF1 ARID4B YY1 SLC30A9 ATF7 RUNX3 SP5 JUNB PPARG CCDC148-AS1 HNRNPDLP2
GH02H158185 0.9 ENCODE 0.4 +18.5 18524 0 ELF3 PKNOX1 FOXA2 NFIB MLX ARID4B SIN3A RAD21 ZSCAN9 RFX5 RN7SL393P CCDC148 PKP4 CCDC148-AS1 HNRNPDLP2
GH02H158189 0.9 ENCODE 0.3 +23.1 23054 0 FOXA2 ATF1 MLX ARID4B SLC30A9 NFYC MIER2 PPARG KAT8 NFIL3 CCDC148-AS1 HNRNPDLP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC148-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC148-AS1 Gene

Chromosome:
2
Start:
158,166,650 bp from pter
End:
158,236,169 bp from pter
Size:
69,520 bases
Orientation:
Plus strand

Genomic View for CCDC148-AS1 Gene

Genes around CCDC148-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC148-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC148-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC148-AS1 Gene

Proteins for CCDC148-AS1 Gene

Post-translational modifications for CCDC148-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC148-AS1 Gene

Domains & Families for CCDC148-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC148-AS1 Gene

Function for CCDC148-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC148-AS1 Gene

Localization for CCDC148-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC148-AS1 Gene

Pathways & Interactions for CCDC148-AS1 Gene

SuperPathways for CCDC148-AS1 Gene

No Data Available

Interacting Proteins for CCDC148-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC148-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC148-AS1 Gene

Drugs & Compounds for CCDC148-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC148-AS1 Gene

mRNA/cDNA for CCDC148-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC148-AS1 Gene

CCDC148 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC148-AS1 Gene

No ASD Table

Relevant External Links for CCDC148-AS1 Gene

GeneLoc Exon Structure for
CCDC148-AS1
ECgene alternative splicing isoforms for
CCDC148-AS1

Expression for CCDC148-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC148-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC148-AS1 Gene

This gene is overexpressed in Testis (x49.7).

SOURCE GeneReport for Unigene cluster for CCDC148-AS1 Gene:

Hs.570262
genes like me logo Genes that share expression patterns with CCDC148-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC148-AS1 Gene

Orthologs for CCDC148-AS1 Gene

Evolution for CCDC148-AS1 Gene

ENSEMBL:
Gene Tree for CCDC148-AS1 (if available)
TreeFam:
Gene Tree for CCDC148-AS1 (if available)

No data available for Orthologs for CCDC148-AS1 Gene

Paralogs for CCDC148-AS1 Gene

No data available for Paralogs for CCDC148-AS1 Gene

Variants for CCDC148-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC148-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000060742 -- 158,209,608(+) AACAG(C/T)GGATC intron-variant
rs1000078596 -- 158,203,674(+) CTGAG(C/G)TTACT intron-variant
rs1000089769 -- 158,233,437(+) CTTTG(A/T)GTGAA intron-variant
rs1000099076 -- 158,208,978(+) AAACA(C/T)GCTCC intron-variant
rs1000100085 -- 158,202,401(+) AATGT(A/C)AAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC148-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2721019 CNV deletion 23290073
nsv1005075 CNV loss 25217958
nsv583440 CNV loss 21841781

Relevant External Links for CCDC148-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC148-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC148-AS1 Gene

Disorders for CCDC148-AS1 Gene

Relevant External Links for CCDC148-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC148-AS1

No disorders were found for CCDC148-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC148-AS1 Gene

Publications for CCDC148-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CCDC148-AS1 Gene

Sources for CCDC148-AS1 Gene

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