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Aliases for CCDC144NL-AS1 Gene

Subcategory (RNA class) for CCDC144NL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC144NL-AS1 Gene

  • CCDC144NL Antisense RNA 1 2 3 5

External Ids for CCDC144NL-AS1 Gene

Previous GeneCards Identifiers for CCDC144NL-AS1 Gene

  • GC17P021080
  • GC17P022294
  • GC17P022732
  • GC17P023064
  • GC17P023352
  • GC17P023644

Summaries for CCDC144NL-AS1 Gene

GeneCards Summary for CCDC144NL-AS1 Gene

CCDC144NL-AS1 (CCDC144NL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC144NL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144NL-AS1 Gene

Genomics for CCDC144NL-AS1 Gene

Regulatory Elements for CCDC144NL-AS1 Gene

Enhancers for CCDC144NL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H021039 1.7 FANTOM5 ENCODE dbSUPER 30.1 +173.8 173838 5.5 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 MEIS3P2 UPF3AP2 CCDC144NL-AS1 USP22 ENSG00000266050 DHRS7B ENSG00000244582 USP32P3 PIR42715
GH17H021031 1.3 Ensembl ENCODE dbSUPER 30.2 +165.7 165706 4.5 PKNOX1 TBL1XR1 SCRT2 FOS ETV6 ATF7 RUNX3 CREM IKZF2 ZNF362 CCDC144NL-AS1 USP22 DHRS7B PIR42715
GH17H021051 1.2 Ensembl ENCODE dbSUPER 29.9 +183.8 183762 1.6 HDAC1 HMG20B L3MBTL2 CEBPB CEBPG REST CTBP1 HDAC2 ZNF26 CEBPA CCDC144NL-AS1 USP22 DHRS7B LINC01563
GH17H020954 0.8 Ensembl ENCODE 39.2 +87.1 87134 1.7 ATF3 HLF USF2 CEBPB FOS HNF4A YY1 CCDC144NL-AS1 ENSG00000244456 GC17M020945
GH17H020962 0.4 ENCODE 34.4 +93.9 93885 0.1 POU5F1 CCDC144NL-AS1 ENSG00000264660 ENSG00000244456
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC144NL-AS1 Gene

Genomic Locations for CCDC144NL-AS1 Gene
chr17:20,868,433-21,002,276
(GRCh38/hg38)
Size:
133,844 bases
Orientation:
Plus strand

Genomic View for CCDC144NL-AS1 Gene

Genes around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC144NL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC144NL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC144NL-AS1 Gene

Proteins for CCDC144NL-AS1 Gene

Post-translational modifications for CCDC144NL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC144NL-AS1 Gene

Domains & Families for CCDC144NL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC144NL-AS1 Gene

Function for CCDC144NL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144NL-AS1 Gene

Localization for CCDC144NL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC144NL-AS1 Gene

Pathways & Interactions for CCDC144NL-AS1 Gene

SuperPathways for CCDC144NL-AS1 Gene

No Data Available

Interacting Proteins for CCDC144NL-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC144NL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC144NL-AS1 Gene

Drugs & Compounds for CCDC144NL-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC144NL-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144NL-AS1 Gene

No ASD Table

Relevant External Links for CCDC144NL-AS1 Gene

GeneLoc Exon Structure for
CCDC144NL-AS1
ECgene alternative splicing isoforms for
CCDC144NL-AS1

Expression for CCDC144NL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC144NL-AS1 Gene

genes like me logo Genes that share expression patterns with CCDC144NL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144NL-AS1 Gene

Orthologs for CCDC144NL-AS1 Gene

Evolution for CCDC144NL-AS1 Gene

ENSEMBL:
Gene Tree for CCDC144NL-AS1 (if available)
TreeFam:
Gene Tree for CCDC144NL-AS1 (if available)

No data available for Orthologs for CCDC144NL-AS1 Gene

Paralogs for CCDC144NL-AS1 Gene

No data available for Paralogs for CCDC144NL-AS1 Gene

Variants for CCDC144NL-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC144NL-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000061149 -- 20,892,386(+) TTGAA(A/G)ACTAT intron-variant, nc-transcript-variant
rs1000093140 -- 20,905,357(+) GGTTC(-/TGT)TGTTT downstream-variant-500B
rs1000093213 -- 20,892,204(+) TCCAG(C/T)TTTGA intron-variant
rs1000113790 -- 20,868,369(+) GTTGT(A/G)TTAAG intron-variant, upstream-variant-2KB
rs1000180210 -- 20,897,406(+) TCCGT(C/G)TCTCT intron-variant, upstream-variant-2KB

Relevant External Links for CCDC144NL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC144NL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC144NL-AS1 Gene

Disorders for CCDC144NL-AS1 Gene

Relevant External Links for CCDC144NL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC144NL-AS1

No disorders were found for CCDC144NL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144NL-AS1 Gene

Publications for CCDC144NL-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  4. Expression profiles analysis reveals an integrated miRNA-lncRNA signature to predict survival in ovarian cancer patients with wild-type BRCA1/2. (PMID: 28978132) Guo L … Li Q (Oncotarget 2017) 3

Products for CCDC144NL-AS1 Gene

Sources for CCDC144NL-AS1 Gene

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