Aliases for CCDC144NL-AS1 Gene
Subcategory (RNA class) for CCDC144NL-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
External Ids for CCDC144NL-AS1 Gene
- HGNC: 51340
- Entrez Gene: 440416
- Ensembl: ENSG00000233098
Previous GeneCards Identifiers for CCDC144NL-AS1 Gene
- GC17P021080
- GC17P022294
- GC17P022732
- GC17P023064
- GC17P023352
Summaries for CCDC144NL-AS1 Gene
GeneCards Summary for CCDC144NL-AS1 Gene
CCDC144NL-AS1 (CCDC144NL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144NL-AS1 Gene
Genomics for CCDC144NL-AS1 Gene
Regulatory Elements for CCDC144NL-AS1 Gene
Enhancers for CCDC144NL-AS1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH17G021039 | 1.8 | FANTOM5 ENCODE dbSUPER | 30.1 | +173.8 | 173838 | 5.5 | CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ZNF610 | CCDC144NL-AS1 USP22 MEIS3P2 DHRS7B UPF3AP2 RPL21P120 USP32P3 PIR42715 |
| GH17G021031 | 1.5 | Ensembl ENCODE dbSUPER | 30.2 | +165.7 | 165706 | 4.5 | PKNOX1 WRNIP1 GLI4 FEZF1 ZNF2 FOS SP3 TSHZ1 REST TBX21 | CCDC144NL-AS1 USP22 DHRS7B PIR42715 |
| GH17G021051 | 1.2 | Ensembl ENCODE dbSUPER | 29.9 | +183.8 | 183762 | 1.6 | HDAC1 HMG20B L3MBTL2 HLF CEBPB CEBPG YY1 HDAC2 ATF3 ZNF26 | CCDC144NL-AS1 USP22 DHRS7B LINC01563 |
| GH17G020954 | 0.9 | Ensembl ENCODE | 39.2 | +87.1 | 87134 | 1.7 | ATF3 HLF USF2 CEBPB FOS HNF4A PRDM10 YY1 | CCDC144NL-AS1 ENSG00000244456 GC17M020945 |
| GH17G021014 | 0.6 | dbSUPER | 31.2 | +146.9 | 146860 | 2.6 | BCOR ZNF146 PKNOX1 POLR2A PBX2 ZNF580 | CCDC144NL-AS1 USP22 PIR42715 PIR42920 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CCDC144NL-AS1 Gene
- Chromosome:
- 17
- Start:
- 20,868,433 bp from pter
- End:
- 21,002,276 bp from pter
- Size:
- 133,844 bases
- Orientation:
- Plus strand
Genomic View for CCDC144NL-AS1 Gene
Genes around CCDC144NL-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17p11.2 by Ensembl
- 17p11.2 by Entrez Gene
- 17p11.2 by HGNC
CCDC144NL-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CCDC144NL-AS1 Gene
Proteins for CCDC144NL-AS1 Gene
Post-translational modifications for CCDC144NL-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for CCDC144NL-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCDC144NL-AS1
- Origene Custom Protein Services for CCDC144NL-AS1
- Search GeneTex for Proteins for CCDC144NL-AS1
Assay Products
No data available for DME Specific Peptides for CCDC144NL-AS1 Gene
Domains & Families for CCDC144NL-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC144NL-AS1 Gene
Function for CCDC144NL-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC144NL-AS1
-
- Search ViGene Biosciences for CCDC144NL-AS1
CRISPR Products
- Browse CRISPR knockouts for CCDC144NL-AS1
miRNA Products
- Search ViGene Biosciences for CCDC144NL-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for CCDC144NL-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for CCDC144NL-AS1
- VectorBuilder custom plasmid, inducible vectors for CCDC144NL-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC144NL-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CCDC144NL-AS1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144NL-AS1 Gene
Localization for CCDC144NL-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC144NL-AS1 Gene
Transcripts for CCDC144NL-AS1 Gene
mRNA/cDNA for CCDC144NL-AS1 Gene
- (47) Selected AceView cDNA sequences:
- (19) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for CCDC144NL-AS1
miRNA Products
- Search ViGene Biosciences for CCDC144NL-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for CCDC144NL-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for CCDC144NL-AS1
- VectorBuilder custom plasmid, inducible vectors for CCDC144NL-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC144NL-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Relevant External Links for CCDC144NL-AS1 Gene
- GeneLoc Exon Structure for
- CCDC144NL-AS1
- ECgene alternative splicing isoforms for
- CCDC144NL-AS1
Expression for CCDC144NL-AS1 Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144NL-AS1 Gene
Orthologs for CCDC144NL-AS1 Gene
Evolution for CCDC144NL-AS1 Gene
- ENSEMBL:
- Gene Tree for CCDC144NL-AS1 (if available)
- TreeFam:
- Gene Tree for CCDC144NL-AS1 (if available)
No data available for Orthologs for CCDC144NL-AS1 Gene
Paralogs for CCDC144NL-AS1 Gene
No data available for Paralogs for CCDC144NL-AS1 Gene
Variants for CCDC144NL-AS1 Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000061149 | -- | 20,892,386(+) | TTGAA(A/G)ACTAT | intron-variant, nc-transcript-variant | |
| rs1000093140 | -- | 20,905,357(+) | GGTTC(-/TGT)TGTTT | downstream-variant-500B | |
| rs1000093213 | -- | 20,892,204(+) | TCCAG(C/T)TTTGA | intron-variant | |
| rs1000113790 | -- | 20,868,369(+) | GTTGT(A/G)TTAAG | intron-variant, upstream-variant-2KB | |
| rs1000180210 | -- | 20,897,406(+) | TCCGT(C/G)TCTCT | intron-variant, upstream-variant-2KB |
Relevant External Links for CCDC144NL-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CCDC144NL-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CCDC144NL-AS1 Gene
Disorders for CCDC144NL-AS1 Gene
Relevant External Links for CCDC144NL-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CCDC144NL-AS1
No disorders were found for CCDC144NL-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144NL-AS1 Gene
Publications for CCDC144NL-AS1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
- Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for CCDC144NL-AS1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCDC144NL-AS1
- Origene Custom Protein Services for CCDC144NL-AS1
- Browse OriGene Inhibitory RNA Products For CCDC144NL-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CCDC144NL-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CCDC144NL-AS1
- GenScript: Custom all cDNA clones Services for CCDC144NL-AS1
- GenScript Custom Purified and Recombinant Proteins Services for CCDC144NL-AS1
- GenScript Custom Assay Services for CCDC144NL-AS1
- GenScript Custom overexpressing Cell Line Services for CCDC144NL-AS1
- Browse GenScript CRISPR for CCDC144NL-AS1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CCDC144NL-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC144NL-AS1
- VectorBuilder custom plasmid, inducible vectors for CCDC144NL-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC144NL-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CCDC144NL-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer