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Aliases for CCDC144CP Gene

Aliases for CCDC144CP Gene

  • Coiled-Coil Domain Containing 144C, Pseudogene 2 3
  • CCDC144C 3 4
  • Coiled-Coil Domain-Containing Protein 144C Pseudogene 4
  • Coiled-Coil Domain Containing 144 Pseudogene 3
  • Coiled-Coil Domain Containing 144C 2

External Ids for CCDC144CP Gene

Previous HGNC Symbols for CCDC144CP Gene

  • CCDC144C

Previous GeneCards Identifiers for CCDC144CP Gene

  • GC17P020234
  • GC17P020237

Summaries for CCDC144CP Gene

GeneCards Summary for CCDC144CP Gene

CCDC144CP (Coiled-Coil Domain Containing 144C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144CP Gene

Genomics for CCDC144CP Gene

Genomic Location for CCDC144CP Gene

Start:
20,321,164 bp from pter
End:
20,403,557 bp from pter
Size:
82,394 bases
Orientation:
Plus strand

Genomic View for CCDC144CP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC144CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC144CP Gene

No data available for Regulatory Elements for CCDC144CP Gene

Proteins for CCDC144CP Gene

  • Protein details for CCDC144CP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYA2-C144C_HUMAN
    Recommended name:
    Putative coiled-coil domain-containing protein 144C
    Protein Accession:
    Q8IYA2
    Secondary Accessions:
    • B7WNP5

    Protein attributes for CCDC144CP Gene

    Size:
    1237 amino acids
    Molecular mass:
    143112 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC144CP Gene

Proteomics data for CCDC144CP Gene at MOPED

Post-translational modifications for CCDC144CP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC144CP Gene

Domains for CCDC144CP Gene

Protein Domains for CCDC144CP Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8IYA2

UniProtKB/Swiss-Prot:

C144C_HUMAN :
  • Q8IYA2
Family:
  • Belongs to the CCDC144 family.
genes like me logo Genes that share domains with CCDC144CP: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CCDC144CP Gene

Function for CCDC144CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC144CP Gene

Localization for CCDC144CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC144CP Gene

Pathways for CCDC144CP Gene

SuperPathways for CCDC144CP Gene

No Data Available

Interacting Proteins for CCDC144CP Gene

Gene Ontology (GO) - Biological Process for CCDC144CP Gene

None

No data available for Pathways by source for CCDC144CP Gene

Transcripts for CCDC144CP Gene

mRNA/cDNA for CCDC144CP Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC144CP Gene

Coiled-coil domain containing 144C, pseudogene:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CCDC144CP
    • Block miRNA regulation of CCDC144CP using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC144CP

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144CP Gene

    No ASD Table

    Relevant External Links for CCDC144CP Gene

    GeneLoc Exon Structure for
    CCDC144CP
    ECgene alternative splicing isoforms for
    CCDC144CP

    Expression for CCDC144CP Gene

    mRNA expression in normal human tissues for CCDC144CP Gene

    mRNA differential expression in normal tissues according to GTEx for CCDC144CP Gene

    This gene is overexpressed in Brain - Cerebellum (8.7) and Testis (7.9).

    Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC144CP Gene

    SOURCE GeneReport for Unigene cluster for CCDC144CP Gene Hs.462475

    genes like me logo Genes that share expressions with CCDC144CP: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC144CP Gene

    Orthologs for CCDC144CP Gene

    Evolution for CCDC144CP Gene

    ENSEMBL:
    Gene Tree for CCDC144CP (if available)
    TreeFam:
    Gene Tree for CCDC144CP (if available)

    No data available for Orthologs for CCDC144CP Gene

    Paralogs for CCDC144CP Gene

    Selected SIMAP similar genes for CCDC144CP Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with CCDC144CP: view

    No data available for Paralogs for CCDC144CP Gene

    Variants for CCDC144CP Gene

    Sequence variations from dbSNP and Humsavar for CCDC144CP Gene

    SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
    rs895101 -- 20,328,448(-) CCCTG(C/T)TTTAT intron-variant
    rs1143332 -- 20,371,880(+) acagt(A/G)atatt intron-variant
    rs1811453 -- 20,328,880(-) TAAAT(G/T)AAAAA intron-variant
    rs1814285 -- 20,327,812(-) gtcac(C/T)caggc intron-variant
    rs1814286 -- 20,327,804(-) ggctg(C/G)agtgc intron-variant

    Relevant External Links for CCDC144CP Gene

    HapMap Linkage Disequilibrium report
    CCDC144CP

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CCDC144CP Gene

    Disorders for CCDC144CP Gene

    No disorders were found for CCDC144CP Gene.

    No data available for UniProtKB/Swiss-Prot for CCDC144CP Gene

    Publications for CCDC144CP Gene

    1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4

    Products for CCDC144CP Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate CCDC144CP
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC144CP
      • Block miRNA regulation of CCDC144CP using miScript Target Protectors

      Sources for CCDC144CP Gene

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