Aliases for CCDC144CP Gene
Aliases for CCDC144CP Gene
External Ids for CCDC144CP Gene
- HGNC: 29073
- Entrez Gene: 348254
- Ensembl: ENSG00000154898
- UniProtKB: Q8IYA2
Previous HGNC Symbols for CCDC144CP Gene
- CCDC144C
Previous GeneCards Identifiers for CCDC144CP Gene
- GC17P020234
- GC17P020237
Summaries for CCDC144CP Gene
GeneCards Summary for CCDC144CP Gene
CCDC144CP (Coiled-Coil Domain Containing 144C, Pseudogene) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144CP Gene
Genomics for CCDC144CP Gene
Regulatory Elements for CCDC144CP Gene
Enhancers for CCDC144CP Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH17G019723 | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 4.6 | -596.5 | -596530 | 1.5 | USF1 MAX KLF4 YY1 ZNF579 HNF4A MYC CHD2 TCF7L2 | ENSG00000252349 SLC47A2 ENSG00000262319 CCDC144CP MAPK7 ENSG00000262681 ENSG00000264785 |
| GH17G019867 | 0.9 | ENCODE | 5.9 | -453.7 | -453666 | 2.0 | SIN3A ZNF2 RAD21 GLIS2 GATA2 EGR2 SP3 CEBPB REST ZEB2 | AKAP10 CCDC144CP ULK2 TRG-CCC3-1 |
| GH17G019550 | 1.1 | ENCODE dbSUPER | 4.1 | -769.6 | -769627 | 2.5 | ELF3 TBP FOXA2 ATF1 THRB ZSCAN9 RAD21 RARA YY1 SLC30A9 | ENSG00000231625 AKAP10 CCDC144CP SNORA59B TRW-CCA2-1 |
| GH17G020898 | 0.9 | ENCODE | 4.3 | +577.8 | 577808 | 1.1 | HDAC1 ATF1 RB1 SREBF2 E2F7 SIN3A RAD21 CHAMP1 SCRT2 ZNF391 | CCDC144NL CCDC144CP RNASEH1P1 |
| GH17G019729 | 0.4 | ENCODE | 4.8 | -591.4 | -591433 | 0.3 | NR3C1 | ENSG00000252349 CCDC144CP ENSG00000264785 ENSG00000262681 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CCDC144CP on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CCDC144CP Gene
- Chromosome:
- 17
- Start:
- 20,321,164 bp from pter
- End:
- 20,403,557 bp from pter
- Size:
- 82,394 bases
- Orientation:
- Plus strand
Genomic View for CCDC144CP Gene
Genes around CCDC144CP on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17p11.2 by Ensembl
- 17p11.2 by Entrez Gene
- 17p11.2 by HGNC
CCDC144CP Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CCDC144CP Gene
Proteins for CCDC144CP Gene
-
Protein details for CCDC144CP Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q8IYA2-C144C_HUMAN
- Recommended name:
- Putative coiled-coil domain-containing protein 144C
- Protein Accession:
- Q8IYA2
- B7WNP5
Protein attributes for CCDC144CP Gene
- Size:
- 1237 amino acids
- Molecular mass:
- 143112 Da
- Quaternary structure:
- No Data Available
Protein Expression for CCDC144CP Gene
Post-translational modifications for CCDC144CP Gene
Antibody Products
-
Abcam antibodies for CCDC144CP
- Invitrogen Antibodies for CCDC144CP
- Search GeneTex for Antibodies for CCDC144CP
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCDC144CP
- Origene Custom Protein Services for CCDC144CP
- Search GeneTex for Proteins for CCDC144CP
Assay Products
No data available for DME Specific Peptides for CCDC144CP Gene
Domains & Families for CCDC144CP Gene
Suggested Antigen Peptide Sequences for CCDC144CP Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q8IYA2- Family:
-
- Belongs to the CCDC144 family.
No data available for Gene Families for CCDC144CP Gene
Function for CCDC144CP Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC144CP
-
- Search ViGene Biosciences for CCDC144CP
CRISPR Products
- Browse CRISPR knockouts for CCDC144CP
miRNA Products
- Search ViGene Biosciences for CCDC144CP
Inhibitory RNA Products
- Search ViGene Biosciences for CCDC144CP
Clone Products
- GenScript: Custom all cDNA clones Services for CCDC144CP
- VectorBuilder custom plasmid, inducible vectors for CCDC144CP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC144CP
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CCDC144CP
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144CP Gene
Localization for CCDC144CP Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC144CP Gene
Transcripts for CCDC144CP Gene
mRNA/cDNA for CCDC144CP Gene
- (3) Additional mRNA sequences :
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CCDC144CP Gene
CRISPR Products
- Browse CRISPR knockouts for CCDC144CP
miRNA Products
- Search ViGene Biosciences for CCDC144CP
Inhibitory RNA Products
- Search ViGene Biosciences for CCDC144CP
Clone Products
- GenScript: Custom all cDNA clones Services for CCDC144CP
- VectorBuilder custom plasmid, inducible vectors for CCDC144CP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC144CP
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CCDC144CP Gene
mRNA differential expression in normal tissues according to GTEx for CCDC144CP Gene
This gene is overexpressed in Brain - Cerebellum (x8.7) and Testis (x7.9).
This gene is overexpressed in Heart (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC144CP Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of CCDC144CP Gene:
CCDC144CPSOURCE GeneReport for Unigene cluster for CCDC144CP Gene:
Hs.462475Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144CP Gene
Orthologs for CCDC144CP Gene
No data available for Orthologs for CCDC144CP Gene
Paralogs for CCDC144CP Gene
(5) SIMAP similar genes for CCDC144CP Gene using alignment to 1 proteins:
No data available for Paralogs for CCDC144CP Gene
Variants for CCDC144CP Gene
| SNP ID | Clin | Chr 17 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000094745 | -- | 20,329,211(+) | TTACT(A/G)AAATG | intron-variant | |
| rs1000113055 | -- | 20,400,947(+) | TTACA(G/T)TTTAT | intron-variant | |
| rs1000150017 | -- | 20,355,002(+) | CACGC(C/T)TGTAA | intron-variant | |
| rs1000203517 | -- | 20,348,505(+) | TTTAT(-/TTG)TTATC | intron-variant | |
| rs1000238630 | -- | 20,369,479(+) | ATGCC(C/T)AGCCT | intron-variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2672480 | CNV | deletion | 23128226 |
| esv2758680 | CNV | gain | 17122850 |
| esv2761953 | CNV | gain | 21179565 |
| esv32786 | CNV | gain+loss | 17666407 |
| esv3572476 | CNV | gain | 25503493 |
| esv3582569 | CNV | loss | 25503493 |
| esv3640197 | CNV | loss | 21293372 |
| esv3640198 | CNV | loss | 21293372 |
| esv3640199 | CNV | gain | 21293372 |
| nsv1055600 | CNV | loss | 25217958 |
| nsv1057389 | CNV | loss | 25217958 |
| nsv1059504 | CNV | gain | 25217958 |
| nsv1061317 | CNV | gain | 25217958 |
| nsv1064854 | CNV | gain | 25217958 |
| nsv1066679 | CNV | gain | 25217958 |
| nsv1116193 | CNV | deletion | 24896259 |
| nsv2004 | CNV | insertion | 18451855 |
| nsv2005 | CNV | deletion | 18451855 |
| nsv428338 | CNV | gain | 18775914 |
| nsv469852 | CNV | gain | 16826518 |
| nsv471495 | CNV | gain | 19718026 |
| nsv520772 | CNV | loss | 19592680 |
| nsv521025 | CNV | gain | 19592680 |
| nsv574581 | CNV | loss | 21841781 |
| nsv833397 | CNV | loss | 17160897 |
| nsv833398 | CNV | loss | 17160897 |
| nsv962286 | CNV | duplication | 23825009 |
| nsv978388 | CNV | duplication | 23825009 |
| nsv978389 | CNV | duplication | 23825009 |
Relevant External Links for CCDC144CP Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CCDC144CP
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC144CP Gene
Disorders for CCDC144CP Gene
Relevant External Links for CCDC144CP
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CCDC144CP
No disorders were found for CCDC144CP Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144CP Gene
Publications for CCDC144CP Gene
- Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
- DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for CCDC144CP Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
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- Browse cDNA Clones
- Browse Cell Culture Products
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- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCDC144CP
- Origene Custom Protein Services for CCDC144CP
- Browse OriGene Inhibitory RNA Products For CCDC144CP
- Browse OriGene qPCR primer pairs and template standards
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Custom all cDNA clones Services for CCDC144CP
- GenScript Custom Purified and Recombinant Proteins Services for CCDC144CP
- GenScript Custom Assay Services for CCDC144CP
- GenScript Custom overexpressing Cell Line Services for CCDC144CP
- Browse GenScript CRISPR for CCDC144CP
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
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- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
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- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Invitrogen Antibodies for CCDC144CP
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCDC144CP
- VectorBuilder custom plasmid, inducible vectors for CCDC144CP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCDC144CP
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CCDC144CP Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer