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Aliases for CCDC144CP Gene

Aliases for CCDC144CP Gene

  • Coiled-Coil Domain Containing 144C, Pseudogene 2 3 5
  • CCDC144C 3 4
  • Coiled-Coil Domain-Containing Protein 144C Pseudogene 4
  • Coiled-Coil Domain Containing 144 Pseudogene 3
  • Coiled-Coil Domain Containing 144C 2

External Ids for CCDC144CP Gene

Previous HGNC Symbols for CCDC144CP Gene

  • CCDC144C

Previous GeneCards Identifiers for CCDC144CP Gene

  • GC17P020234
  • GC17P020237

Summaries for CCDC144CP Gene

GeneCards Summary for CCDC144CP Gene

CCDC144CP (Coiled-Coil Domain Containing 144C, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144CP Gene

Genomics for CCDC144CP Gene

Regulatory Elements for CCDC144CP Gene

Enhancers for CCDC144CP Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F019866 0.9 ENCODE 5.9 -453.7 -453666 2.0 SIN3A ZNF2 RAD21 KAT2B GLIS2 EGR2 SP3 CEBPB REST ZEB2 AKAP10 CCDC144CP ULK2 TRG-CCC3-1
GH17F019729 0.4 ENCODE 4.8 -591.4 -591433 0.3 NR3C1 ENSG00000252349 CCDC144CP ENSG00000264785 ENSG00000262681
GH17F019723 1.6 FANTOM5 Ensembl ENCODE 4.6 -596.3 -596267 2.2 ZNF146 USF1 KLF4 MYC TCF7L2 CHD2 ENSG00000252349 SLC47A2 ENSG00000262319 CCDC144CP MAPK7 ENSG00000262681 ENSG00000264785
GH17F020898 0.2 ENCODE 4.3 +577.8 577808 1.1 HDAC1 ATF1 SREBF2 SIN3A RAD21 CHAMP1 SCRT2 ZNF391 CREM ZNF654 CCDC144NL CCDC144CP RNASEH1P1
GH17F020911 0.4 FANTOM5 4.3 +590.4 590387 0.2 CCDC144NL-AS1 KCNJ18 CCDC144CP RNASEH1P1 LOC105369205
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC144CP on UCSC Golden Path with GeneCards custom track

Promoters for CCDC144CP Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805835 36 1600 CTCF ATF1 PKNOX1 SIN3A ZIC2 RAD21 ZNF2 ZNF121 GATA3 ZNF143

Genomic Location for CCDC144CP Gene

Chromosome:
17
Start:
20,321,164 bp from pter
End:
20,403,557 bp from pter
Size:
82,394 bases
Orientation:
Plus strand

Genomic View for CCDC144CP Gene

Genes around CCDC144CP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC144CP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC144CP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC144CP Gene

Proteins for CCDC144CP Gene

  • Protein details for CCDC144CP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IYA2-C144C_HUMAN
    Recommended name:
    Putative coiled-coil domain-containing protein 144C
    Protein Accession:
    Q8IYA2
    Secondary Accessions:
    • B7WNP5

    Protein attributes for CCDC144CP Gene

    Size:
    1237 amino acids
    Molecular mass:
    143112 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC144CP Gene

Post-translational modifications for CCDC144CP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC144CP Gene

Domains & Families for CCDC144CP Gene

Protein Domains for CCDC144CP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC144CP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IYA2

UniProtKB/Swiss-Prot:

C144C_HUMAN :
  • Belongs to the CCDC144 family.
Family:
  • Belongs to the CCDC144 family.
genes like me logo Genes that share domains with CCDC144CP: view

No data available for Gene Families for CCDC144CP Gene

Function for CCDC144CP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144CP Gene

Localization for CCDC144CP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC144CP Gene

Pathways & Interactions for CCDC144CP Gene

SuperPathways for CCDC144CP Gene

No Data Available

Interacting Proteins for CCDC144CP Gene

Gene Ontology (GO) - Biological Process for CCDC144CP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC144CP Gene

Transcripts for CCDC144CP Gene

mRNA/cDNA for CCDC144CP Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC144CP Gene

Coiled-coil domain containing 144C, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144CP Gene

No ASD Table

Relevant External Links for CCDC144CP Gene

GeneLoc Exon Structure for
CCDC144CP
ECgene alternative splicing isoforms for
CCDC144CP

Expression for CCDC144CP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC144CP Gene

mRNA differential expression in normal tissues according to GTEx for CCDC144CP Gene

This gene is overexpressed in Brain - Cerebellum (x8.7) and Testis (x7.9).

Protein differential expression in normal tissues from HIPED for CCDC144CP Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC144CP Gene



Protein tissue co-expression partners for CCDC144CP Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCDC144CP Gene:

CCDC144CP

SOURCE GeneReport for Unigene cluster for CCDC144CP Gene:

Hs.462475
genes like me logo Genes that share expression patterns with CCDC144CP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC144CP Gene

Orthologs for CCDC144CP Gene

Evolution for CCDC144CP Gene

ENSEMBL:
Gene Tree for CCDC144CP (if available)
TreeFam:
Gene Tree for CCDC144CP (if available)

No data available for Orthologs for CCDC144CP Gene

Paralogs for CCDC144CP Gene

(5) SIMAP similar genes for CCDC144CP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CCDC144CP: view

No data available for Paralogs for CCDC144CP Gene

Variants for CCDC144CP Gene

Sequence variations from dbSNP and Humsavar for CCDC144CP Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10451315 -- 20,348,502(+) TTTTT(A/T)ATTTG intron-variant
rs111255624 -- 20,377,034(+) GAGGC(A/T)GATTT intron-variant
rs111319512 -- 20,400,843(-) AGAAC(C/T)GTTTC intron-variant
rs111435431 -- 20,375,503(+) TGGTA(A/T)AATCT intron-variant
rs111467928 -- 20,390,228(+) GCAGT(C/T)CTGCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC144CP Gene

Variant ID Type Subtype PubMed ID
esv2672480 CNV deletion 23128226
esv2758680 CNV gain 17122850
esv2761953 CNV gain 21179565
esv32786 CNV gain+loss 17666407
esv3572476 CNV gain 25503493
esv3582569 CNV loss 25503493
esv3640197 CNV loss 21293372
esv3640198 CNV loss 21293372
esv3640199 CNV gain 21293372
nsv1055600 CNV loss 25217958
nsv1057389 CNV loss 25217958
nsv1059504 CNV gain 25217958
nsv1061317 CNV gain 25217958
nsv1064854 CNV gain 25217958
nsv1066679 CNV gain 25217958
nsv1116193 CNV deletion 24896259
nsv2004 CNV insertion 18451855
nsv2005 CNV deletion 18451855
nsv428338 CNV gain 18775914
nsv469852 CNV gain 16826518
nsv471495 CNV gain 19718026
nsv520772 CNV loss 19592680
nsv521025 CNV gain 19592680
nsv574581 CNV loss 21841781
nsv833397 CNV loss 17160897
nsv833398 CNV loss 17160897
nsv962286 CNV duplication 23825009
nsv978388 CNV duplication 23825009
nsv978389 CNV duplication 23825009

Relevant External Links for CCDC144CP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC144CP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC144CP Gene

Disorders for CCDC144CP Gene

Relevant External Links for CCDC144CP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC144CP

No disorders were found for CCDC144CP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144CP Gene

Publications for CCDC144CP Gene

  1. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CCDC144CP Gene

Sources for CCDC144CP Gene

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