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CCDC144B Gene(Pseudogene)

Coiled-Coil Domain Containing 144B (Pseudogene)

GCID:
GC17M018802
GIFtS:
29
Genes Participants
UDN Logo

Aliases for CCDC144B Gene

Aliases for CCDC144B Gene

  • Coiled-Coil Domain Containing 144B (Pseudogene) 2 3 5
  • Coiled-Coil Domain Containing 144B 2

External Ids for CCDC144B Gene

Previous GeneCards Identifiers for CCDC144B Gene

  • GC17M018384
  • GC17M018427
  • GC17M018486
  • GC17M018127
  • GC17M018433
  • GC17M018436
  • GC17M018475
  • GC17M018576
  • GC17M018643
  • GC17M018678
  • GC17M018718
  • GC17M018757

Summaries for CCDC144B Gene

GeneCards Summary for CCDC144B Gene

CCDC144B (Coiled-Coil Domain Containing 144B (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC144B Gene

Genomics for CCDC144B Gene

Products:

  1. Regulatory Element

Regulatory Elements for CCDC144B Gene

Enhancers for CCDC144B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G017833 1.9 FANTOM5 ENCODE dbSUPER 4.2 +787.2 787163 8.9 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 ENSG00000264885 DRG2 SMCR8 TOM1L2 FOXO3B MPRIP-AS1 FAM106A RPL13P12 LOC100419436 FLCN
GH17G018625 1 ENCODE 0.7 +0.0 12 0.7 HDGF PKNOX1 ATF1 SIN3A GLI4 ZNF2 ZNF143 ZNF207 KLF7 ZNF263 USP32P2 ENSG00000264885 DRG2 FOXO3B FAM106A SHMT1 LOC100419436 CCDC144B ENSG00000276532
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC144B on UCSC Golden Path with GeneCards custom track

Promoters for CCDC144B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000092106 316 1400 HDGF PKNOX1 ATF1 SIN3A FEZF1 GLI4 ZNF2 ZNF143 ZNF207 KLF7

Transcription factor binding sites by QIAGEN in the CCDC144B gene promoter:

Genomic Location for CCDC144B Gene

Chromosome:
17
Start:
18,537,800 bp from pter
End:
18,625,617 bp from pter
Size:
87,818 bases
Orientation:
Minus strand

Genomic View for CCDC144B Gene

Genes around CCDC144B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC144B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC144B Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CCDC144B Gene

Proteins for CCDC144B Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CCDC144B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3MJ40-C144B_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 144B
    Protein Accession:
    Q3MJ40
    Secondary Accessions:
    • Q6P5Q3
    • Q8N200

    Protein attributes for CCDC144B Gene

    Size:
    725 amino acids
    Molecular mass:
    82951 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH62767.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC144B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC144B Gene

Post-translational modifications for CCDC144B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC144B Gene

Domains & Families for CCDC144B Gene

Protein Domains for CCDC144B Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC144B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3MJ40

UniProtKB/Swiss-Prot:

C144B_HUMAN :
  • Belongs to the CCDC144 family.
Family:
  • Belongs to the CCDC144 family.
genes like me logo Genes that share domains with CCDC144B: view

No data available for Gene Families for CCDC144B Gene

Function for CCDC144B Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for CCDC144B Gene

GenomeRNAi human phenotypes for CCDC144B:
genes like me logo Genes that share phenotypes with CCDC144B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC144B Gene

Localization for CCDC144B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC144B Gene

Pathways & Interactions for CCDC144B Gene

SuperPathways for CCDC144B Gene

PathCards logo More details on SuperPathways for CCDC144B
No Data Available

Interacting Proteins for CCDC144B Gene

Gene Ontology (GO) - Biological Process for CCDC144B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC144B Gene

Drugs & Compounds for CCDC144B Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CCDC144B Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for CCDC144B Gene

(13) Additional mRNA sequences :
(95) Selected AceView cDNA sequences:
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC144B Gene

Coiled-coil domain containing 144B (pseudogene):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC144B Gene

No ASD Table

Relevant External Links for CCDC144B Gene

GeneLoc Exon Structure for
CCDC144B
ECgene alternative splicing isoforms for
CCDC144B

Expression for CCDC144B Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC144B Gene

mRNA expression in normal human tissues for CCDC144B Gene
mRNA expression by BioGPS for CCDC144B GenemRNA expression by GTEx for CCDC144B Gene

mRNA differential expression in normal tissues according to GTEx for CCDC144B Gene

This gene is overexpressed in Brain - Cerebellum (x7.5).

NURSA nuclear receptor signaling pathways regulating expression of CCDC144B Gene:

CCDC144B

SOURCE GeneReport for Unigene cluster for CCDC144B Gene:

Hs.448012
genes like me logo Genes that share expression patterns with CCDC144B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC144B Gene

Orthologs for CCDC144B Gene

Evolution for CCDC144B Gene

ENSEMBL:
Gene Tree for CCDC144B (if available)
TreeFam:
Gene Tree for CCDC144B (if available)

No data available for Orthologs for CCDC144B Gene

Paralogs for CCDC144B Gene

(4) SIMAP similar genes for CCDC144B Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC144B: view

No data available for Paralogs for CCDC144B Gene

Variants for CCDC144B Gene

Sequence variations from dbSNP and Humsavar for CCDC144B Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000012956 -- 18,563,348(+) AAACA(A/T)TTTTT intron-variant
rs1000137509 -- 18,582,519(+) ATGTA(-/TATGTGTGTGTG)TGTGT intron-variant
rs1000195087 -- 18,582,886(+) AGTAG(A/C)CTGTT intron-variant
rs1000277099 -- 18,620,680(+) ACAGC(A/C)TATCT intron-variant
rs1000389017 -- 18,559,599(+) AAATA(C/T)AATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC144B Gene

Variant ID Type Subtype PubMed ID
dgv27e213 CNV loss 24956385
dgv3110n100 CNV gain 25217958
dgv3111n100 CNV gain 25217958
dgv3112n100 CNV gain+loss 25217958
dgv3113n100 CNV loss 25217958
dgv3114n100 CNV gain+loss 25217958
dgv3115n100 CNV gain 25217958
dgv5489n54 CNV loss 21841781
dgv55e203 CNV gain+loss 21179565
esv2670394 CNV deletion 23128226
esv2758677 CNV gain+loss 17122850
esv29176 CNV gain 19812545
esv3640153 CNV loss 21293372
esv3640155 CNV loss 21293372
esv3640156 CNV loss 21293372
esv3640157 CNV gain 21293372
nsv1057803 CNV loss 25217958
nsv1076439 CNV duplication 25765185
nsv1121932 CNV deletion 24896259
nsv1132449 CNV duplication 24896259
nsv1144794 CNV deletion 24896259
nsv1153805 CNV duplication 26484159
nsv1160460 OTHER complex 26073780
nsv1160461 CNV deletion 26073780
nsv1160462 CNV deletion 26073780
nsv428333 CNV gain 18775914
nsv442738 CNV gain+loss 18776908
nsv469661 CNV gain 16826518
nsv499818 OTHER inversion 21111241
nsv511052 OTHER complex 20534489
nsv511593 CNV loss 21212237
nsv827913 CNV gain 20364138
nsv833388 CNV loss 17160897
nsv9504 CNV gain+loss 18304495
nsv953840 CNV deletion 24416366
nsv953841 CNV duplication 24416366
nsv960067 CNV duplication 23825009
nsv960069 CNV duplication 23825009
nsv962275 CNV duplication 23825009
nsv962276 CNV duplication 23825009

Relevant External Links for CCDC144B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC144B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC144B Gene

Disorders for CCDC144B Gene

Relevant External Links for CCDC144B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC144B

No disorders were found for CCDC144B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC144B Gene

Publications for CCDC144B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. (PMID: 11997339) Park S.S. … Lupski J.R. (Genome Res. 2002) 2 3 64
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64

Products for CCDC144B Gene

Sources for CCDC144B Gene

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