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Aliases for CCDC142 Gene

Aliases for CCDC142 Gene

  • Coiled-Coil Domain Containing 142 2 3

External Ids for CCDC142 Gene

Summaries for CCDC142 Gene

GeneCards Summary for CCDC142 Gene

CCDC142 (Coiled-Coil Domain Containing 142) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC142 Gene

Genomics for CCDC142 Gene

Genomic Location for CCDC142 Gene

Start:
74,471,986 bp from pter
End:
74,483,408 bp from pter
Size:
11,423 bases
Orientation:
Minus strand

Genomic View for CCDC142 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC142 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC142 Gene

Regulatory Elements for CCDC142 Gene

Proteins for CCDC142 Gene

  • Protein details for CCDC142 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q17RM4-CC142_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 142
    Protein Accession:
    Q17RM4
    Secondary Accessions:
    • B7ZKV5
    • Q8NBJ3
    • Q8NBV2
    • Q96KA7

    Protein attributes for CCDC142 Gene

    Size:
    750 amino acids
    Molecular mass:
    81643 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC11474.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC142 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC142 Gene

Proteomics data for CCDC142 Gene at MOPED

Post-translational modifications for CCDC142 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC142 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC142 Gene

Domains for CCDC142 Gene

Protein Domains for CCDC142 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC142 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC142: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC142 Gene

Function for CCDC142 Gene

Phenotypes for CCDC142 Gene

GenomeRNAi human phenotypes for CCDC142:
genes like me logo Genes that share phenotypes with CCDC142: view

miRNA for CCDC142 Gene

miRTarBase miRNAs that target CCDC142

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC142 Gene

Localization for CCDC142 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC142 Gene COMPARTMENTS Subcellular localization image for CCDC142 gene
Compartment Confidence
extracellular 2
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC142 Gene

Pathways for CCDC142 Gene

SuperPathways for CCDC142 Gene

No Data Available

Interacting Proteins for CCDC142 Gene

Gene Ontology (GO) - Biological Process for CCDC142 Gene

None

No data available for Pathways by source for CCDC142 Gene

Transcripts for CCDC142 Gene

Unigene Clusters for CCDC142 Gene

Coiled-coil domain containing 142:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC142 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b · 8c ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b ^ 13a · 13b
SP1: - - - -
SP2:
SP3:
SP4:
SP5: -
SP6:
SP7: - -
SP8:
SP9:

Relevant External Links for CCDC142 Gene

GeneLoc Exon Structure for
CCDC142
ECgene alternative splicing isoforms for
CCDC142

Expression for CCDC142 Gene

mRNA expression in normal human tissues for CCDC142 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC142 Gene

SOURCE GeneReport for Unigene cluster for CCDC142 Gene Hs.430199

genes like me logo Genes that share expressions with CCDC142: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC142 Gene

Orthologs for CCDC142 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC142 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC142 35
  • 99.28 (n)
  • 99.19 (a)
CCDC142 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC142 35
  • 82.99 (n)
  • 77.34 (a)
CCDC142 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC142 35
  • 84.75 (n)
  • 78.41 (a)
CCDC142 36
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc142 35
  • 76.14 (n)
  • 73.26 (a)
Ccdc142 16
Ccdc142 36
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC142 36
  • 54 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc142 35
  • 76.65 (n)
  • 73.4 (a)
lizard
(Anolis carolinensis)
Reptilia CCDC142 36
  • 35 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CCDC142 36
  • 21 (a)
OneToOne
Species with no ortholog for CCDC142:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC142 Gene

ENSEMBL:
Gene Tree for CCDC142 (if available)
TreeFam:
Gene Tree for CCDC142 (if available)

Paralogs for CCDC142 Gene

No data available for Paralogs for CCDC142 Gene

Variants for CCDC142 Gene

Sequence variations from dbSNP and Humsavar for CCDC142 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs2108212 -- 74,477,292(-) aaaaa(A/T)acaaa intron-variant
rs2158830 -- 74,476,557(-) AGAAC(A/G)TTCAA intron-variant
rs3049536 -- 74,477,674(+) CGTTC(-/GTTC)TTTAA intron-variant
rs5832132 -- 74,477,669(+) TGGAG(-/CGTT)CGTTC intron-variant
rs6759423 -- 74,477,999(+) AAAAa(A/T)atata intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC142 Gene

Variant ID Type Subtype PubMed ID
dgv1199e1 CNV Complex 17122850
nsv458185 CNV Loss 19166990
nsv515851 CNV Loss 19592680
dgv4166n71 CNV Loss 21882294

Relevant External Links for CCDC142 Gene

HapMap Linkage Disequilibrium report
CCDC142

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC142 Gene

Disorders for CCDC142 Gene

No disorders were found for CCDC142 Gene.

No data available for UniProtKB/Swiss-Prot for CCDC142 Gene

Publications for CCDC142 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3 4
  3. [Novel bidirectional promoter from human genome]. (PMID: 21790010) Orekhova A.S. … Rubtsov P.M. (Mol. Biol. (Mosk.) 2011) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for CCDC142 Gene

Sources for CCDC142 Gene

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