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Aliases for CCDC140 Gene

Aliases for CCDC140 Gene

  • Coiled-Coil Domain Containing 140 2 3 5

External Ids for CCDC140 Gene

Previous GeneCards Identifiers for CCDC140 Gene

  • GC02P222872
  • GC02P223162
  • GC02P215016

Summaries for CCDC140 Gene

Entrez Gene Summary for CCDC140 Gene

  • This gene encodes a protein that appears to be restricted to select higher primate species. This protein contains a C-terminal coiled-coil domain, which is a versatile structural motif consisting of multiple amphipathic alpha-helices that twist around each other to form a supercoil. [provided by RefSeq, Aug 2011]

GeneCards Summary for CCDC140 Gene

CCDC140 (Coiled-Coil Domain Containing 140) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC140 Gene

Genomics for CCDC140 Gene

Regulatory Elements for CCDC140 Gene

Enhancers for CCDC140 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F222289 1.1 FANTOM5 Ensembl ENCODE 4.2 -7.1 -7122 3.4 RNF2 SUZ12 CBX2 OSR2 CBX8 CTBP2 KDM1A PRDM1 EZH2 TCF7L2 PAX3 CCDC140 GC02P222238
GH02F222795 0.8 FANTOM5 Ensembl ENCODE 1.2 +498.6 498583 3.3 PKNOX1 ATF1 MLX ARID4B DMAP1 ZNF48 SLC30A9 FOS SP5 NFYC SGPP2 CCDC140 LOC105373903 ACSL3
GH02F222293 0.8 Ensembl ENCODE 0.8 -1.2 -1202 5.9 ZNF76 ZNF48 GLIS2 ZNF366 SCRT2 ZNF263 SP3 CBX8 GLIS1 KDM1A CCDC140 GC02P222238
GH02F222301 1 ENCODE 0.8 +2.9 2930 0.2 CBX8 RNF2 SUZ12 CBX2 EZH2 FARSB CCDC140 LOC440934
GH02F222304 0.4 Ensembl 0.4 +7.3 7254 2.4 RFX1 RNF2 SUZ12 CBX2 BMI1 CBX8 HDAC2 MBD1 CTBP2 KDM1A FARSB CCDC140 LOC440934
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC140 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC140 Gene

222,298,147 bp from pter
222,305,217 bp from pter
7,071 bases
Plus strand

Genomic View for CCDC140 Gene

Genes around CCDC140 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC140 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC140 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC140 Gene

Proteins for CCDC140 Gene

  • Protein details for CCDC140 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 140
    Protein Accession:

    Protein attributes for CCDC140 Gene

    163 amino acids
    Molecular mass:
    18252 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC140 Gene

Post-translational modifications for CCDC140 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC140 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC140 Gene

Domains & Families for CCDC140 Gene

Protein Domains for CCDC140 Gene


Suggested Antigen Peptide Sequences for CCDC140 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC140: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC140 Gene

Function for CCDC140 Gene

Phenotypes for CCDC140 Gene

GenomeRNAi human phenotypes for CCDC140:
genes like me logo Genes that share phenotypes with CCDC140: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC140 Gene

Localization for CCDC140 Gene

Subcellular locations from

Jensen Localization Image for CCDC140 Gene COMPARTMENTS Subcellular localization image for CCDC140 gene
Compartment Confidence
nucleus 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC140 Gene

Pathways & Interactions for CCDC140 Gene

SuperPathways for CCDC140 Gene

No Data Available

Interacting Proteins for CCDC140 Gene

Gene Ontology (GO) - Biological Process for CCDC140 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC140 Gene

Transcripts for CCDC140 Gene

mRNA/cDNA for CCDC140 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CCDC140 Gene

Coiled-coil domain containing 140:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC140 Gene

No ASD Table

Relevant External Links for CCDC140 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC140 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC140 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC140 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x8.4), Minor Salivary Gland (x7.4), Muscle - Skeletal (x6.8), and Brain - Cerebellum (x5.6).

Protein differential expression in normal tissues from HIPED for CCDC140 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC140 Gene

Protein tissue co-expression partners for CCDC140 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC140 Gene:


SOURCE GeneReport for Unigene cluster for CCDC140 Gene:

genes like me logo Genes that share expression patterns with CCDC140: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CCDC140 Gene

Orthologs for CCDC140 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CCDC140 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCDC140 34 35
  • 99.59 (n)
Species where no ortholog for CCDC140 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC140 Gene

Gene Tree for CCDC140 (if available)
Gene Tree for CCDC140 (if available)

Paralogs for CCDC140 Gene

No data available for Paralogs for CCDC140 Gene

Variants for CCDC140 Gene

Sequence variations from dbSNP and Humsavar for CCDC140 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs104893650 Pathogenic 222,297,150(-) CAGGC(C/T)GCTGC upstream-variant-2KB, reference, missense
rs104893651 Pathogenic 222,297,048(-) CGTCT(C/T)CAAGA upstream-variant-2KB, reference, missense
rs104893652 Pathogenic 222,297,158(-) ATCAA(C/G)GGCAG upstream-variant-2KB, reference, missense
rs104893653 Pathogenic 222,297,160(-) TTATC(A/C)ACGGC upstream-variant-2KB, reference, missense
rs104893654 Pathogenic 222,297,031(-) GCAGG(C/T)ACCAG upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for CCDC140 Gene

Variant ID Type Subtype PubMed ID
nsv834550 CNV gain 17160897

Variation tolerance for CCDC140 Gene

Residual Variation Intolerance Score: 55.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.20; 24.08% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC140 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC140 Gene

Disorders for CCDC140 Gene

Relevant External Links for CCDC140

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC140 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC140 Gene

Publications for CCDC140 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4 64
  3. Coiled coil domains: stability, specificity, and biological implications. (PMID: 14760737) Mason J.M. … Arndt K.M. (Chembiochem 2004) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CCDC140 Gene

Sources for CCDC140 Gene

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