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CCDC137 Gene

protein-coding GIFtS: 42
GCID: GC17P079633

Coiled-Coil Domain Containing 137

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MalaCards

disease database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Coiled-Coil Domain Containing 137¹ ²
Coiled-Coil Domain-Containing Protein 137²
Hepatocellular Carcinoma Related Protein 2²

External Ids:	HGNC: 33451¹	Entrez Gene: 339230²	Ensembl: ENSG00000185298⁷	OMIM: 614271⁵	UniProtKB: Q6PK04³

ORGUL members:

Export aliases for CCDC137 gene to outside databases

Previous GC identifers: GC17U900828 GC17P077245 GC17P075079

(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC137 Gene:

CCDC137 (coiled-coil domain containing 137) is a protein-coding gene.

Gene Wiki entry for CCDC137 Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
About This Section

Regulatory elements:

Regulatory transcription factor binding sites in the CCDC137 gene promoter:
HFH-3 HTF SREBP-1c SREBP-1b C/EBPalpha FOXI1 SREBP-1a ATF6 RSRFC4
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search Chromatin IP Primers for CCDC137

Epigenetics:

DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC137

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q25.3 Ensembl cytogenetic band: 17q25.3 HGNC cytogenetic band: 17q25.3

CCDC137 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC137 gene location

GeneLoc information about chromosome 17 GeneLoc Exon Structure

GeneLoc location for GC17P079633: view genomic region (about GC identifiers)

Start:	79,633,394 bp from pter	End:	79,640,937 bp from pter
Size:	7,544 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, ²neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, antibodies-online, and/or GeneTex,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
About This Section

UniProtKB/Swiss-Prot: CC137_HUMAN, Q6PK04 (See protein sequence)

Recommended Name: Coiled-coil domain-containing protein 137

Size: 289 amino acids; 33231 Da

Explore the universe of human proteins at neXtProt for CCDC137: NX_Q6PK04

Explore proteomics data for CCDC137 at MOPED

Post-translational modifications:

Modification sites at neXtProt

Modification sites at PhosphoSitePlus

See CCDC137 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_954981.1

ENSEMBL proteins:

ENSP00000329360 ENSP00000458884 ENSP00000458350 ENSP00000461207 ENSP00000460261

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GenesLikeMe)
About This Section

1 InterPro protein domain:

IPR026680 CCDC137

Graphical View of Domain Structure for InterPro Entry Q6PK04

ProtoNet protein and cluster: Q6PK04

Find genes that share domains with CCDC137 About GenesLikeMe

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
About This Section

Gene Ontology (GO): 1 molecular function term: About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0044822	poly(A) RNA binding	IDA	--

Find genes that share ontologies with CCDC137 About GenesLikeMe

Phenotypes:
2 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Ccdc137):

cellular

mortality/aging

Find genes that share phenotypes with CCDC137 About GenesLikeMe

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genOway: Develop your customized and physiologically relevant rodent model for CCDC137

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
About This Section

Subcellular locations from COMPARTMENTS:

Compartment	Confidence
nucleus	3
mitochondrion	2
cytosol	1

About this image

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GenesLikeMe, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene, Sets of similar genes according to GenesLikeMe)
About This Section

Custom Pathway & Disease-focused RT² Profiler PCR Arrays for CCDC137
Interactions:

Search GeneGlobe Interaction Network for CCDC137

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

5 Interacting proteins for CCDC137 (Q6PK04³ ENSP00000329360⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ATP5J2	P56134³, ENSP00000292475⁴	I2D: score=4 STRING: ENSP00000292475
MPP3	Q13368³, ENSP00000381425⁴	I2D: score=4 STRING: ENSP00000381425
NSMAF	Q92636³	I2D: score=1
PRKAA1	Q13131³	I2D: score=1
TERF2	ENSP00000254942⁴	STRING: ENSP00000254942

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, Sets of similar genes according to GenesLikeMe)
About This Section

Browse Small Molecules at EMD Millipore

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
About This Section

REFSEQ mRNAs for CCDC137 gene:

NM_199287.2

6 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000329214(uc002kbc.4) ENST00000575223 ENST00000574107 ENST00000574200

ENST00000571916 ENST00000572531

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Selected AceView cDNA sequences (see all 154):

BG056095 BM798021 N56867 AW445033 CA422682 AI991334 CR596466 BG056030

BM798403 BC052272 BM548065 BG055723 AI093140 BF115231 AA554311 BG230563

BQ575236 CR606833 AI278136 AA598792 BF195200 AI201901 BG056094 BM701908

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC137 About this scheme

ExUns:	1a	·	1b	·	1c	·	1d	^	2	^	3	^	4a	·	4b	·	4c	^	5	^	6	^	7
SP1:							-
SP2:							-				-
SP3:											-

ECgene alternative splicing isoforms for CCDC137

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GenesLikeMe, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

CCDC137 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: GTGAAACTGC

About this image

CCDC137 Protein expression data from MOPED¹, PaxDb² and MaxQB³:

About this image

CCDC137 Protein Expression

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for CCDC137 gene from Selected species (see all 11) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Ccdc137^{1 , 5}	coiled-coil domain containing 137^{1, 5}	76.87(n)¹ 74.25(a)¹		11 (84.15 cM)⁵ 67291¹ NM_152807.3¹ NP_690020.1¹ 120458115⁵
chicken (Gallus gallus)	Aves	CCDC137¹	coiled-coil domain containing 137	60.52(n) 47.93(a)		417454 XM_415702.4 XP_415702.3
lizard (Anolis carolinensis)	Reptilia	CCDC137⁶	coiled-coil domain containing 137	44(a)	1 ↔ 1	2(98479574-98487757)
tropical clawed frog (Xenopus tropicalis)	Amphibia	LOC100485278¹	coiled-coil domain-containing protein 137-like	59.03(n) 50.93(a)		100485278 XM_002937587.2 XP_002937633.1
zebrafish (Danio rerio)	Actinopterygii	ccdc137¹	coiled-coil domain containing 137	54.29(n) 44.29(a)		767789 NM_001076756.1 NP_001070224.1

ENSEMBL Gene Tree for CCDC137 (if available)
TreeFam Gene Tree for CCDC137 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68,Sets of similar genes according to GenesLikeMe)
About This Section

Paralogs for CCDC137 gene

Find genes that share paralogs with CCDC137 About GenesLikeMe

2 Pseudogenes.org Pseudogenes for CCDC137
PGOHUM00000238060 PGOHUM00000238061

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section

SNP ID	Valid	Clinical significance	Chr 17 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs34631866^1,2	C,F	--	80744809(+)	`ACCCGG/TCTGGG`	1	--	us2k¹		6		NA WA EA	364
rs35955182^1,2	C,F	--	80744839(+)	`TCGGCT/CGGGGG`	1	--	us2k¹		12		NA WA CSA EA	376
rs35842897^1,2	C,F	--	80744862(+)	`CTCATG/AGCAGG`	1	--	us2k¹		13		NA WA CSA EA	377
rs35092522^1,2	C,F	--	80744975(+)	`TTGAGG/CCCAAA`	1	--	us2k¹		7		NA WA EA	366
rs150327141^1,2	C	--	80745038(+)	`AAAAA-/AAA AAAAACCCTCC`	1	--	cds¹		0	--	--	--	--
rs202131274^1,2	C	--	80745166(+)	`GCGTCA/C/TTGGAC`	1	--	us2k¹		0	--	--	--	--
rs137869680^1,2	C	--	80745222(+)	`ACCTGA/C/GTGTGC`	1	--	us2k¹		0	--	--	--	--
rs200385200^1,2	C	--	80745252(+)	`GGAAGG/CCCTTG`	1	--	us2k¹		1		EU	1221
rs147105203^1,2	C	--	80745283(+)	`CTCCTC/TCAGGG`	1	--	us2k¹		1		NA	4534
rs137928765^1,2	F	--	80745302(+)	`GCCCGC/TTCCCC`	1	--	us2k¹		1		NA	4514

HapMap Linkage Disequilibrium report for CCDC137 (79633394 - 79640937 bp)

Structural Variations
Database of Genomic Variants (DGV) 10 variations for CCDC137: About this table

Variant ID	Type	Subtype	PubMed ID
dgv3330n71	CNV	Loss	21882294
dgv3333n71	CNV	Loss	21882294
nsv828128	CNV	Loss	20364138
nsv909109	CNV	Loss	21882294
nsv909052	CNV	Loss	21882294
dgv3332n71	CNV	Loss	21882294
nsv470620	CNV	Loss	18288195
nsv909111	CNV	Loss	21882294
nsv428351	CNV	Gain	18775914
esv26223	CNV	Gain+Loss	19812545

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB, Sets of similar genes according to GenesLikeMe)
About This Section

OMIM gene information: 614271 OMIM disorders: --

Find genes that share disorders with CCDC137 About GenesLikeMe

Export disorders for CCDC137 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for CCDC137 gene, integrated from 10 sources (see all 13):
(articles sorted by number of sources associating them with CCDC137)

The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)¹ Varjosalo M....Gstaiger M. (Cell Rep 2013)
Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)¹ Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
Initial characterization of the human central proteome. (PubMed id 21269460)² Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)² Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PubMed id 21044950)¹ Lee O.H....Songyang Z. (amp 2011)
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)² Olsen J.V....Mann M. (Sci. Signal. 2010)
Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)² Mayya V.... Han D.K. (Sci. Signal. 2009)
Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336)² Cantin G.T....Yates J.R. III (J. Proteome Res. 2008)
A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)² Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)¹ Lamesch P.... Vidal M. (Genomics 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 339230	HGNC: 33451	AceView: MGC16597	Ensembl:ENSG00000185298	euGenes: HUgn339230
ECgene: CCDC137	H-InvDB: CCDC137

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for CCDC137	Pharmacogenomics, SNPs, Pathways

Intellectual Property for CCDC137 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for CCDC137 gene:
Search GeneIP for patents involving CCDC137

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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About This Section


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CCDC137 Gene

Coiled-Coil Domain Containing 137

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Export list of displayed genes

CCDC137 Gene

Coiled-Coil Domain Containing 137

Aliasesfor CCDC137 gene

Summariesfor CCDC137 gene

Genomic Viewsfor CCDC137 gene

Proteinsfor CCDC137 gene

CCDC137 Human Recombinant Protein Products:

CCDC137 Antibody Products:

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Localizationfor CCDC137 gene

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Drugs & Compoundsfor CCDC137 gene

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Expression for CCDC137 gene

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Genomic Variantsfor CCDC137 gene

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Genome Databases showing CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

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for CCDC137 gene

Genomic Variants
for CCDC137 gene

Disorders / Diseases
for CCDC137 gene

Publications
for CCDC137 gene

Intellectual Property
for CCDC137 gene

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for CCDC137 gene