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CCDC137 Gene

protein-coding   GIFtS: 42
GCID: GC17P079633

Coiled-Coil Domain Containing 137

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Coiled-Coil Domain Containing 1371 2
Coiled-Coil Domain-Containing Protein 1372
Hepatocellular Carcinoma Related Protein 22

External Ids:    HGNC: 334511   Entrez Gene: 3392302   Ensembl: ENSG000001852987   OMIM: 6142715   UniProtKB: Q6PK043   
ORGUL members:         

Export aliases for CCDC137 gene to outside databases

Previous GC identifers: GC17U900828 GC17P077245 GC17P075079


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CCDC137 Gene:
CCDC137 (coiled-coil domain containing 137) is a protein-coding gene.

Gene Wiki entry for CCDC137 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the CCDC137 gene promoter:
         HFH-3   HTF   SREBP-1c   SREBP-1b   C/EBPalpha   FOXI1   SREBP-1a   ATF6   RSRFC4   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for CCDC137

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC137


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q25.3   Ensembl cytogenetic band:  17q25.3   HGNC cytogenetic band: 17q25.3

CCDC137 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC137 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P079633:  view genomic region     (about GC identifiers)

Start:
79,633,394 bp from pter      End:
79,640,937 bp from pter
Size:
7,544 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: CC137_HUMAN, Q6PK04 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 137  
Size: 289 amino acids; 33231 Da

Explore the universe of human proteins at neXtProt for CCDC137: NX_Q6PK04

Explore proteomics data for CCDC137 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CCDC137 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_954981.1  
    ENSEMBL proteins: 
     ENSP00000329360   ENSP00000458884   ENSP00000458350   ENSP00000461207   ENSP00000460261  

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    Cloud-Clone Corp. Proteins for CCDC137

     
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    antibodies-online proteins for CCDC137 (3 products) 

     
    antibodies-online peptides for CCDC137

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    antibodies-online kits for CCDC137 (18 products) 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR026680 CCDC137

    Graphical View of Domain Structure for InterPro Entry Q6PK04

    ProtoNet protein and cluster: Q6PK04


    Find genes that share domains with CCDC137           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with CCDC137           About GenesLikeMe


    Phenotypes:
         2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Ccdc137):
     cellular  mortality/aging 

    Find genes that share phenotypes with CCDC137           About GenesLikeMe

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for CCDC137

    miRNA
    Products:
        
    miRTarBase miRNAs that target CCDC137:
    hsa-mir-877-3p (MIRT037097), hsa-mir-155-5p (MIRT020508), hsa-mir-615-3p (MIRT040105)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    mitochondrion2
    cytosol1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCDC137
    Interactions:

        Search GeneGlobe Interaction Network for CCDC137

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for CCDC137 (Q6PK043 ENSP000003293604) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATP5J2P561343, ENSP000002924754I2D: score=4 STRING: ENSP00000292475
    MPP3Q133683, ENSP000003814254I2D: score=4 STRING: ENSP00000381425
    NSMAFQ926363I2D: score=1 
    PRKAA1Q131313I2D: score=1 
    TERF2ENSP000002549424STRING: ENSP00000254942
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CCDC137 (CC137)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CCDC137 gene: 
    NM_199287.2  

    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000329214(uc002kbc.4) ENST00000575223 ENST00000574107 ENST00000574200
    ENST00000571916 ENST00000572531
    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat CCDC137

    Selected AceView cDNA sequences (see all 154):

    BG056095 BM798021 N56867 AW445033 CA422682 AI991334 CR596466 BG056030 
    BM798403 BC052272 BM548065 BG055723 AI093140 BF115231 AA554311 BG230563 
    BQ575236 CR606833 AI278136 AA598792 BF195200 AI201901 BG056094 BM701908 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC137    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7
    SP1:                    -                                                   
    SP2:                    -           -                                       
    SP3:                                -                                       


    ECgene alternative splicing isoforms for CCDC137

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CCDC137 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGAAACTGC
    CCDC137 Expression
    About this image

    CCDC137 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CCDC137 Protein Expression
        Custom PCR Arrays for CCDC137
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC137

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC137 gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc1371 , 5 coiled-coil domain containing 1371, 5 76.87(n)1
    74.25(a)1
      11 (84.15 cM)5
    672911  NM_152807.31  NP_690020.11 
     1204581155 
    chicken
    (Gallus gallus)
    Aves CCDC1371 coiled-coil domain containing 137 60.52(n)
    47.93(a)
      417454  XM_415702.4  XP_415702.3 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC1376
    coiled-coil domain containing 137
    44(a)
    1 ↔ 1
    2(98479574-98487757)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia LOC1004852781 coiled-coil domain-containing protein 137-like 59.03(n)
    50.93(a)
      100485278  XM_002937587.2  XP_002937633.1 
    zebrafish
    (Danio rerio)
    Actinopterygii ccdc1371 coiled-coil domain containing 137 54.29(n)
    44.29(a)
      767789  NM_001076756.1  NP_001070224.1 


    ENSEMBL Gene Tree for CCDC137 (if available)
    TreeFam Gene Tree for CCDC137 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CCDC137 gene

    Find genes that share paralogs with CCDC137           About GenesLikeMe


    2 Pseudogenes.org Pseudogenes for CCDC137
    PGOHUM00000238060 PGOHUM00000238061


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CCDC137 (see all 281)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs346318661,2
    C,F--80744809(+) ACCCGG/TCTGGG 1 -- us2k16Minor allele frequency- T:0.18NA WA EA 364
    rs359551821,2
    C,F--80744839(+) TCGGCT/CGGGGG 1 -- us2k112Minor allele frequency- C:0.39NA WA CSA EA 376
    rs358428971,2
    C,F--80744862(+) CTCATG/AGCAGG 1 -- us2k113Minor allele frequency- A:0.39NA WA CSA EA 377
    rs350925221,2
    C,F--80744975(+) TTGAGG/CCCAAA 1 -- us2k17Minor allele frequency- C:0.18NA WA EA 366
    rs1503271411,2
    C--80745038(+) AAAAA-/AAA   
      AAAAAC
    CCTCC
    1 -- cds10--------
    rs2021312741,2
    C--80745166(+) GCGTCA/C/TTGGAC 1 -- us2k10--------
    rs1378696801,2
    C--80745222(+) ACCTGA/C/GTGTGC 1 -- us2k10--------
    rs2003852001,2
    C--80745252(+) GGAAGG/CCCTTG 1 -- us2k11Minor allele frequency- C:0.00EU 1221
    rs1471052031,2
    C--80745283(+) CTCCTC/TCAGGG 1 -- us2k11Minor allele frequency- T:0.00NA 4534
    rs1379287651,2
    F--80745302(+) GCCCGC/TTCCCC 1 -- us2k11Minor allele frequency- T:0.00NA 4514

    HapMap Linkage Disequilibrium report for CCDC137 (79633394 - 79640937 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10 variations for CCDC137:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv3330n71CNV Loss21882294
    dgv3333n71CNV Loss21882294
    nsv828128CNV Loss20364138
    nsv909109CNV Loss21882294
    nsv909052CNV Loss21882294
    dgv3332n71CNV Loss21882294
    nsv470620CNV Loss18288195
    nsv909111CNV Loss21882294
    nsv428351CNV Gain18775914
    esv26223CNV Gain+Loss19812545

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing CCDC137
    DNA2.0 Custom Variant and Variant Library Synthesis for CCDC137

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 614271    OMIM disorders: --


    Find genes that share disorders with CCDC137           About GenesLikeMe


    Export disorders for CCDC137 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CCDC137 gene, integrated from 10 sources (see all 13):
    (articles sorted by number of sources associating them with CCDC137)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)1 Varjosalo M....Gstaiger M. (Cell Rep 2013)
    2. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (Nat. Cell Biol. 2012)
    3. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    4. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    5. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PubMed id 21044950)1 Lee O.H....Songyang Z. (amp 2011)
    6. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)
    7. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (Sci. Signal. 2009)
    8. Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336)2 Cantin G.T....Yates J.R. III (J. Proteome Res. 2008)
    9. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    10. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 339230 HGNC: 33451 AceView: MGC16597 Ensembl:ENSG00000185298 euGenes: HUgn339230
    ECgene: CCDC137 H-InvDB: CCDC137

    (According to HUGE)
    About This Section

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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
    About This Section

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    NameDescription
    PharmGKB entry for CCDC137 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CCDC137 gene:
    Search GeneIP for patents involving CCDC137

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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