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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CCDC137 Gene

protein-coding   GIFtS: 42
GCID: GC17P079633

Coiled-Coil Domain Containing 137

  Search for CCDC137
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Coiled-Coil Domain Containing 1371 2
Coiled-Coil Domain-Containing Protein 1372
Hepatocellular Carcinoma Related Protein 22

External Ids:    HGNC: 334511   Entrez Gene: 3392302   Ensembl: ENSG000001852987   OMIM: 6142715   UniProtKB: Q6PK043   

Export aliases for CCDC137 gene to outside databases

Previous GC identifers: GC17U900828 GC17P077245 GC17P075079


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for CCDC137 Gene: 
CCDC137 (coiled-coil domain containing 137) is a protein-coding gene.

Gene Wiki entry for CCDC137 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NC_018928.2  NT_010783.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CCDC137 gene promoter:
         HFH-3   HTF   SREBP-1c   SREBP-1b   C/EBPalpha   FOXI1   SREBP-1a   ATF6   RSRFC4   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for CCDC137

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CCDC137


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q25.3   Ensembl cytogenetic band:  17q25.3   HGNC cytogenetic band: 17q25.3

CCDC137 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC137 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P079633:  view genomic region     (about GC identifiers)

Start:
79,633,394 bp from pter      End:
79,640,937 bp from pter
Size:
7,544 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CC137_HUMAN, Q6PK04 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 137  
Size: 289 amino acids; 33231 Da

Explore the universe of human proteins at neXtProt for CCDC137: NX_Q6PK04

Explore proteomics data for CCDC137 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6PK04

  • CCDC137 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    CCDC137 Protein Expression
    REFSEQ proteins: NP_954981.1  
    ENSEMBL proteins: 
     ENSP00000329360   ENSP00000458884   ENSP00000458350   ENSP00000461207   ENSP00000460261  

    Human Recombinant Protein Products for CCDC137: 
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    Cloud-Clone Corp. CLIAs for CCDC137


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR026680 CCDC137

    Graphical View of Domain Structure for InterPro Entry Q6PK04

    ProtoNet protein and cluster: Q6PK04


    CCDC137 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Ccdc137):
     mortality/aging 

    CCDC137 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for CCDC137 
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for CCDC137 
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC137


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CCDC137

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5 Interacting proteins for CCDC137 (Q6PK043 ENSP000003293604) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ATP5J2P561343, ENSP000002924754I2D: score=4 STRING: ENSP00000292475
    MPP3Q133683, ENSP000003814254I2D: score=4 STRING: ENSP00000381425
    NSMAFQ926363I2D: score=1 
    PRKAA1Q131313I2D: score=1 
    TERF2ENSP000002549424STRING: ENSP00000254942
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CCDC137 (CC137)

    Search CenterWatch for drugs/clinical trials and news about CCDC137 / CC137

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CCDC137 gene: 
    NM_199287.2  

    Unigene Cluster for CCDC137:

    Coiled-coil domain containing 137
    Hs.744125  [show with all ESTs]
    Unigene Representative Sequence: FJ649645
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000329214(uc002kbc.4) ENST00000575223 ENST00000574107 ENST00000574200
    ENST00000571916 ENST00000572531
    miRNA
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    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for CCDC137
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CCDC137
    Clone
    Products:
         
    OriGene clones in human, mouse for CCDC137 (see all 7)
    OriGene ORF clones in mouse, rat for CCDC137
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    GenScript: all cDNA clones in your preferred vector: CCDC137 (NM_199287)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for CCDC137
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CCDC137
    Sirion Biotech Customized lentivirus for stable overexpression of CCDC137 
                         Customized lentivirus expression plasmids for stable overexpression of CCDC137 
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC137
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CCDC137
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC137

    Additional mRNA sequence: 

    BC009369.2 BC052272.1 FJ649645.1 

    17 DOTS entries:

    DT.91828799  DT.95173536  DT.91665014  DT.115093  DT.100023589  DT.100812851  DT.95273536  DT.120892522 
    DT.100777399  DT.100812853  DT.100812854  DT.92414326  DT.100023591  DT.120892587  DT.91737208  DT.95255977 
    DT.100713426 

    24/154 AceView cDNA sequences (see all 154):

    CR606833 N56867 AI201901 BG056094 AW445033 BF195200 BU738073 BG056095 
    BG230563 AI093140 BM548065 AI991334 CA422682 BM701908 AA554311 BG056030 
    AA598792 BQ575236 CR596466 BF115231 AI278136 BC052272 BG055723 AI870937 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for CCDC137    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7
    SP1:                    -                                                   
    SP2:                    -           -                                       
    SP3:                                -                                       


    ECgene alternative splicing isoforms for CCDC137

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CCDC137 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGAAACTGC
    CCDC137 Expression
    About this image


    See CCDC137 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CCDC137

    SOURCE GeneReport for Unigene cluster: Hs.744125
        SABiosciences Custom PCR Arrays for CCDC137
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for CCDC137
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CCDC137
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CCDC137

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC137 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc1371 , 5 coiled-coil domain containing 1371, 5 76.08(n)1
    72.86(a)1
      11 (84.15 cM)5
    672911  NM_152807.31  NP_690020.11 
     1204581155 
    chicken
    (Gallus gallus)
    Aves CCDC1371 coiled-coil domain containing 137 58.27(n)
    46.9(a)
      417454  XM_415702.3  XP_415702.3 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC1376
    Uncharacterized protein
    44(a)
    1 ↔ 1
    2(98479574-98487757)
    zebrafish
    (Danio rerio)
    Actinopterygii zgc:1534771 zgc:153477 54.3(n)
    44.6(a)
      767789  NM_001076756.1  NP_001070224.1 


    ENSEMBL Gene Tree for CCDC137 (if available)
    TreeFam Gene Tree for CCDC137 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CCDC137 gene

    CCDC137 for paralogs           About GeneDecksing


    2 Pseudogenes.org Pseudogenes for CCDC137
    PGOHUM00000238060 PGOHUM00000238061


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/281 SNPs in CCDC137 are shown (see all 281)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs346318661,2
    C,F--80744809(+) ACCCGG/TCTGGG 1 -- us2k16Minor allele frequency- T:0.18NA WA EA 364
    rs359551821,2
    C,F--80744839(+) TCGGCT/CGGGGG 1 -- us2k112Minor allele frequency- C:0.39NA WA CSA EA 376
    rs358428971,2
    C,F--80744862(+) CTCATG/AGCAGG 1 -- us2k113Minor allele frequency- A:0.39NA WA CSA EA 377
    rs350925221,2
    C,F--80744975(+) TTGAGG/CCCAAA 1 -- us2k17Minor allele frequency- C:0.18NA WA EA 366
    rs1503271411,2
    C--80745038(+) AAAAA-/AAA   
      AAAAAC
    CCTCC
    1 -- cds10--------
    rs2021312741,2
    C--80745166(+) GCGTCA/C/TTGGAC 1 -- us2k10--------
    rs1378696801,2
    C--80745222(+) ACCTGA/C/GTGTGC 1 -- us2k10--------
    rs2003852001,2
    C--80745252(+) GGAAGG/CCCTTG 1 -- us2k11Minor allele frequency- C:0.00EU 1221
    rs1471052031,2
    C--80745283(+) CTCCTC/TCAGGG 1 -- us2k11Minor allele frequency- T:0.00NA 4534
    rs1379287651,2
    F--80745302(+) GCCCGC/TTCCCC 1 -- us2k11Minor allele frequency- T:0.00NA 4514

    HapMap Linkage Disequilibrium report for CCDC137 (79633394 - 79640937 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10 variations for CCDC137:    About this table     
    Variant IDTypeSubtypePubMed ID
    dgv3330n71CNV Loss21882294
    dgv3333n71CNV Loss21882294
    nsv828128CNV Loss20364138
    nsv909109CNV Loss21882294
    nsv909052CNV Loss21882294
    dgv3332n71CNV Loss21882294
    nsv470620CNV Loss18288195
    nsv909111CNV Loss21882294
    nsv428351CNV Gain18775914
    esv26223CNV Gain+Loss19812545

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CCDC137 for disorders           About MalaCards
    OMIM gene information: 614271    OMIM disorders: --


    CCDC137 for disorders           About GeneDecksing


    Export disorders for CCDC137 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CCDC137 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with CCDC137)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    2. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    3. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    4. Genome-wide YFP fluorescence complementation screen id entifies new regulators for telomere signaling in human cells. (PubMed id 21044950)1 Lee O.H....Songyang Z. (2011)
    5. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
    6. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)
    7. Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336)2 Cantin G.T....Yates J.R. III (2008)
    8. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
    9. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    10. A human protein-protein interaction network: a resource for annotating the proteome. (PubMed id 16169070)1 Stelzl U.... Wanker E.E. (2005)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 339230 HGNC: 33451 AceView: MGC16597 Ensembl:ENSG00000185298 euGenes: HUgn339230
    ECgene: CCDC137 H-InvDB: CCDC137

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CCDC137 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CCDC137 gene:
    Search GeneIP for patents involving CCDC137

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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