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Aliases for CCDC13-AS1 Gene

Subcategory (RNA class) for CCDC13-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CCDC13-AS1 Gene

  • CCDC13 Antisense RNA 1 2 3 5
  • CCDC13 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CCDC13-AS1 Gene

Previous GeneCards Identifiers for CCDC13-AS1 Gene

  • GC00U933605

Summaries for CCDC13-AS1 Gene

GeneCards Summary for CCDC13-AS1 Gene

CCDC13-AS1 (CCDC13 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC13-AS1 Gene

Genomics for CCDC13-AS1 Gene

Regulatory Elements for CCDC13-AS1 Gene

Enhancers for CCDC13-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F042759 1.4 Ensembl ENCODE 34.6 +29.7 29748 5.0 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 CCDC13-AS1 CCDC13 SEC22C RN7SL567P RPL36P20 GEMIN2P2 POMGNT2 HIGD1A LOC729083
GH03F042739 1.3 FANTOM5 Ensembl ENCODE 21.6 +7.4 7419 1.6 CTCF ZNF792 ZNF2 RAD21 YY1 ZKSCAN1 TEAD3 POLR2A GATAD1 SCRT2 CCDC13-AS1 HHATL LOC729083
GH03F042744 1.1 Ensembl ENCODE 22.2 +12.0 12026 1.2 HDAC1 TBP PKNOX1 TBL1XR1 SIN3A ZNF2 RAD21 ZNF121 GATA2 POLR3A CCDC13-AS1 LOC729083 CCDC13 HHATL
GH03F042772 1 ENCODE 22.9 +40.6 40576 1.4 ATF1 PKNOX1 SIN3A FEZF1 YY1 GATA2 ZNF143 ZNF207 FOS ZNF263 CCDC13-AS1 HIGD1A CCDC13 LOC729083
GH03F042755 0.9 ENCODE 25.1 +23.9 23874 1.8 ZNF133 DMAP1 ZNF48 RAD21 RARA YY1 CREM MIXL1 THAP11 CEBPB CCDC13-AS1 HIGD1A LOC729083
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC13-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC13-AS1 Gene

Chromosome:
3
Start:
42,732,575 bp from pter
End:
42,746,768 bp from pter
Size:
14,194 bases
Orientation:
Plus strand

Genomic View for CCDC13-AS1 Gene

Genes around CCDC13-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC13-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC13-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC13-AS1 Gene

Proteins for CCDC13-AS1 Gene

Post-translational modifications for CCDC13-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC13-AS1 Gene

Domains & Families for CCDC13-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC13-AS1 Gene

Function for CCDC13-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC13-AS1 Gene

Localization for CCDC13-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCDC13-AS1 Gene

Pathways & Interactions for CCDC13-AS1 Gene

SuperPathways for CCDC13-AS1 Gene

No Data Available

Interacting Proteins for CCDC13-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC13-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC13-AS1 Gene

Transcripts for CCDC13-AS1 Gene

mRNA/cDNA for CCDC13-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC13-AS1 Gene

No ASD Table

Relevant External Links for CCDC13-AS1 Gene

GeneLoc Exon Structure for
CCDC13-AS1
ECgene alternative splicing isoforms for
CCDC13-AS1

Expression for CCDC13-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CCDC13-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC13-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).
genes like me logo Genes that share expression patterns with CCDC13-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCDC13-AS1 Gene

Orthologs for CCDC13-AS1 Gene

Evolution for CCDC13-AS1 Gene

ENSEMBL:
Gene Tree for CCDC13-AS1 (if available)
TreeFam:
Gene Tree for CCDC13-AS1 (if available)

No data available for Orthologs for CCDC13-AS1 Gene

Paralogs for CCDC13-AS1 Gene

No data available for Paralogs for CCDC13-AS1 Gene

Variants for CCDC13-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC13-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10865921 -- 42,730,688(+) CAGGG(C/T)GAATG intron-variant, upstream-variant-2KB
rs10865922 -- 42,740,040(+) CTAAC(C/G)CATGA intron-variant
rs111292252 -- 42,739,758(+) ACTTC(C/T)TTTTT intron-variant, nc-transcript-variant, reference, missense
rs11129969 -- 42,732,240(+) CTTTT(C/T)GGGGA intron-variant, upstream-variant-2KB
rs11129970 -- 42,732,380(+) CATGG(C/T)TCCAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC13-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv4728n100 CNV loss 25217958
nsv3782 CNV insertion 18451855

Relevant External Links for CCDC13-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC13-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC13-AS1 Gene

Disorders for CCDC13-AS1 Gene

Relevant External Links for CCDC13-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC13-AS1

No disorders were found for CCDC13-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC13-AS1 Gene

Publications for CCDC13-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for CCDC13-AS1 Gene

Sources for CCDC13-AS1 Gene

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