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Aliases for CCDC13-AS1 Gene

Subcategory (RNA class) for CCDC13-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CCDC13-AS1 Gene

  • CCDC13 Antisense RNA 1 2 3 5
  • CCDC13 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for CCDC13-AS1 Gene

Previous GeneCards Identifiers for CCDC13-AS1 Gene

  • GC00U933605
  • GC03P042775

Summaries for CCDC13-AS1 Gene

GeneCards Summary for CCDC13-AS1 Gene

CCDC13-AS1 (CCDC13 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CCDC13-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC13-AS1 Gene

Genomics for CCDC13-AS1 Gene

Regulatory Elements for CCDC13-AS1 Gene

Enhancers for CCDC13-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H042759 1.3 Ensembl ENCODE dbSUPER 34.6 +29.0 29048 3.6 SOX13 ZFP64 MAX CEBPG ZNF644 ZNF697 RARA ZNF7 YY1 TEAD3 CCDC13-AS1 KRBOX1 SEC22C POMGNT2 ZNF662 HIGD1A LINC02158
GH03H042739 1.4 FANTOM5 Ensembl ENCODE dbSUPER 21.6 +7.5 7461 1.5 SCRT1 TFE3 SCRT2 ZNF623 ATF2 ZKSCAN1 CCDC13-AS1 HHATL LINC02158
GH03H042755 0.9 ENCODE 25.1 +23.9 23874 1.8 FOXA2 ZNF133 DMAP1 YY1 TCF12 ZNF143 FOS ATF7 REST PPARG CCDC13-AS1 HIGD1A LINC02158
GH03H042772 0.9 ENCODE 23 +40.6 40576 1.4 PKNOX1 ATF1 SIN3A BMI1 YY1 RFX5 ZNF143 ZNF207 RCOR1 ATF7 CCDC13-AS1 HIGD1A CCDC13 LINC02158
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC13-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CCDC13-AS1 Gene

Genomic Locations for CCDC13-AS1 Gene
14,194 bases
Plus strand

Genomic View for CCDC13-AS1 Gene

Genes around CCDC13-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC13-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC13-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC13-AS1 Gene

Proteins for CCDC13-AS1 Gene

Post-translational modifications for CCDC13-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC13-AS1 Gene

Domains & Families for CCDC13-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCDC13-AS1 Gene

Function for CCDC13-AS1 Gene

Phenotypes From GWAS Catalog for CCDC13-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCDC13-AS1 Gene

Localization for CCDC13-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CCDC13-AS1 Gene

Pathways & Interactions for CCDC13-AS1 Gene

SuperPathways for CCDC13-AS1 Gene

No Data Available

Interacting Proteins for CCDC13-AS1 Gene

Gene Ontology (GO) - Biological Process for CCDC13-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC13-AS1 Gene

Drugs & Compounds for CCDC13-AS1 Gene

No Compound Related Data Available

Transcripts for CCDC13-AS1 Gene

mRNA/cDNA for CCDC13-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC13-AS1 Gene

No ASD Table

Relevant External Links for CCDC13-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC13-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC13-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CCDC13-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.6).
genes like me logo Genes that share expression patterns with CCDC13-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC13-AS1 Gene

Orthologs for CCDC13-AS1 Gene

Evolution for CCDC13-AS1 Gene

Gene Tree for CCDC13-AS1 (if available)
Gene Tree for CCDC13-AS1 (if available)

No data available for Orthologs for CCDC13-AS1 Gene

Paralogs for CCDC13-AS1 Gene

No data available for Paralogs for CCDC13-AS1 Gene

Variants for CCDC13-AS1 Gene

Sequence variations from dbSNP and Humsavar for CCDC13-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000127617 -- 42,732,241(+) TTTTC(A/G)GGGAT intron-variant, upstream-variant-2KB
rs1000459528 -- 42,730,645(+) TAACA(C/T)TTACC intron-variant, upstream-variant-2KB
rs1000495342 -- 42,731,055(+) CATTT(A/G)GCTTT intron-variant, upstream-variant-2KB
rs1000555669 -- 42,743,449(+) GTCTT(G/T)CTCTG intron-variant
rs1000740998 -- 42,737,072(+) CCCCA(A/C)CCACC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC13-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv3782 CNV insertion 18451855
dgv4728n100 CNV loss 25217958

Relevant External Links for CCDC13-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCDC13-AS1 Gene

Disorders for CCDC13-AS1 Gene

Relevant External Links for CCDC13-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC13-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC13-AS1 Gene

Publications for CCDC13-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for CCDC13-AS1 Gene

Sources for CCDC13-AS1 Gene

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