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Aliases for CCDC125 Gene

Aliases for CCDC125 Gene

  • Coiled-Coil Domain Containing 125 2 3 5
  • Kenae 3 4
  • Coiled-Coil Domain-Containing Protein 125 3
  • Protein Kenae 4

External Ids for CCDC125 Gene

Previous GeneCards Identifiers for CCDC125 Gene

  • GC05M068613
  • GC05M068576
  • GC05M065532

Summaries for CCDC125 Gene

GeneCards Summary for CCDC125 Gene

CCDC125 (Coiled-Coil Domain Containing 125) is a Protein Coding gene.

UniProtKB/Swiss-Prot for CCDC125 Gene

  • May be involved in the regulation of cell migration.

Additional gene information for CCDC125 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC125 Gene

Genomics for CCDC125 Gene

Regulatory Elements for CCDC125 Gene

Enhancers for CCDC125 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H069414 1.5 FANTOM5 Ensembl ENCODE 16.6 -83.0 -83033 3 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF121 GLIS2 ELK1 ZNF207 DEK CCDC125 MARVELD2 GC05M069454
GH05H069334 1.2 Ensembl ENCODE 20.7 -2.8 -2831 2.2 RB1 ARID4B RAD21 CHAMP1 YY1 ZNF366 SCRT2 ZNF143 RCOR1 FOS CCDC125 MARVELD2 CENPH GC05P069334 NDUFB9P1
GH05H069330 1.1 ENCODE 22 +0.6 562 2.9 HDGF FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CCDC125 ENSG00000198237 ENSG00000254701 GTF2H2C SLC30A5 SMA4 AK6 CDK7 ENSG00000179978 CFL1P5
GH05H069166 1.1 ENCODE 21.8 +165.4 165440 2.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 FOS SP3 CCDC125 GTF2H2C RAD17 CCNB1 PIR41528
GH05H069449 1.4 Ensembl ENCODE dbSUPER 16.2 -120.0 -120006 6.2 HDAC1 ELF3 FOXA2 ARID4B RAD21 RARA YY1 FOS CREM MIXL1 OCLN CCDC125 RAD17 LOC101928924 MARVELD2 GTF2H2C ENSG00000250138 ENSG00000198237 SMN2 GC05M069454
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC125 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC125 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000182014 -148 2400 HDGF FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Locations for CCDC125 Gene

Genomic Locations for CCDC125 Gene
59,752 bases
Minus strand

Genomic View for CCDC125 Gene

Genes around CCDC125 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC125 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC125 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC125 Gene

Proteins for CCDC125 Gene

  • Protein details for CCDC125 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 125
    Protein Accession:
    Secondary Accessions:
    • Q86Z19

    Protein attributes for CCDC125 Gene

    511 amino acids
    Molecular mass:
    58629 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC125 Gene


neXtProt entry for CCDC125 Gene

Post-translational modifications for CCDC125 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC125 Gene

Domains & Families for CCDC125 Gene

Gene Families for CCDC125 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC125 Gene


Suggested Antigen Peptide Sequences for CCDC125 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC125: view

No data available for UniProtKB/Swiss-Prot for CCDC125 Gene

Function for CCDC125 Gene

Molecular function for CCDC125 Gene

UniProtKB/Swiss-Prot Function:
May be involved in the regulation of cell migration.

Phenotypes From GWAS Catalog for CCDC125 Gene

Gene Ontology (GO) - Molecular Function for CCDC125 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with CCDC125: view
genes like me logo Genes that share phenotypes with CCDC125: view

Animal Model Products

miRNA for CCDC125 Gene

miRTarBase miRNAs that target CCDC125

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC125 Gene

Localization for CCDC125 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC125 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC125 gene
Compartment Confidence
nucleus 4
cytoskeleton 2
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Intermediate filaments (1)
  • Nuclear membrane (1)
  • Nucleoplasm (1)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CCDC125 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA 19787194
genes like me logo Genes that share ontologies with CCDC125: view

Pathways & Interactions for CCDC125 Gene

SuperPathways for CCDC125 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC125 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0035024 negative regulation of Rho protein signal transduction IDA 19787194
GO:0090630 activation of GTPase activity IDA 19787194
GO:2000145 regulation of cell motility IEA --
GO:2000146 negative regulation of cell motility IDA 19787194
genes like me logo Genes that share ontologies with CCDC125: view

No data available for Pathways by source and SIGNOR curated interactions for CCDC125 Gene

Drugs & Compounds for CCDC125 Gene

No Compound Related Data Available

Transcripts for CCDC125 Gene

Unigene Clusters for CCDC125 Gene

Coiled-coil domain containing 125:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC125 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1: -
SP2: -
SP4: - -

Relevant External Links for CCDC125 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC125 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC125 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CCDC125 Gene

This gene is overexpressed in Plasma (28.7), Fetal heart (15.2), Stomach (11.4), and Breast (8.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC125 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC125 Gene:


SOURCE GeneReport for Unigene cluster for CCDC125 Gene:


Evidence on tissue expression from TISSUES for CCDC125 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with CCDC125: view

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC125 Gene

Orthologs for CCDC125 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC125 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCDC125 33 34
  • 99.59 (n)
(Bos Taurus)
Mammalia CCDC125 33 34
  • 85.7 (n)
(Canis familiaris)
Mammalia CCDC125 33 34
  • 82.91 (n)
(Mus musculus)
Mammalia Ccdc125 33 16 34
  • 79.25 (n)
(Rattus norvegicus)
Mammalia Ccdc125 33
  • 78.35 (n)
(Monodelphis domestica)
Mammalia CCDC125 34
  • 59 (a)
(Ornithorhynchus anatinus)
Mammalia CCDC125 34
  • 54 (a)
(Gallus gallus)
Aves CCDC125 33 34
  • 65.83 (n)
(Anolis carolinensis)
Reptilia CCDC125 34
  • 52 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc125 33
  • 62.25 (n)
(Danio rerio)
Actinopterygii ccdc125 33 34
  • 54.42 (n)
Species where no ortholog for CCDC125 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC125 Gene

Gene Tree for CCDC125 (if available)
Gene Tree for CCDC125 (if available)

Paralogs for CCDC125 Gene

No data available for Paralogs for CCDC125 Gene

Variants for CCDC125 Gene

Sequence variations from dbSNP and Humsavar for CCDC125 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1030910276 -- 69,299,108(+) CTTTC(-/TTTCT)TTTTT intron-variant
rs10471774 --
rs111487084 -- 69,278,205(+) TTCAC(-/TTTAT)CTTTA intron-variant
rs11451510 -- 69,299,112(+) CTTTC(-/T)TTTTT intron-variant
rs11460860 -- 69,315,263(+) AAAAT(-/A)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC125 Gene

Variant ID Type Subtype PubMed ID
nsv968921 CNV duplication 23825009
nsv821643 CNV loss 15273396
esv3605381 CNV gain 21293372
esv3605380 CNV gain 21293372
esv3575855 CNV gain 25503493
dgv5694n100 CNV gain 25217958

Variation tolerance for CCDC125 Gene

Residual Variation Intolerance Score: 70.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.16; 90.36% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC125 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC125 Gene

Disorders for CCDC125 Gene

Relevant External Links for CCDC125

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC125 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC125 Gene

Publications for CCDC125 Gene

  1. Role of Kenae/CCDC125 in cell motility through the deregulation of RhoGTPase. (PMID: 19787194) Araya N … Nakajima T (International journal of molecular medicine 2009) 3 4 60
  2. Toward a comprehensive characterization of a human cancer cell phosphoproteome. (PMID: 23186163) Zhou H … Mohammed S (Journal of proteome research 2013) 4 60
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L … Andersson-Svahn H (Molecular & cellular proteomics : MCP 2008) 3 60
  4. A quantitative atlas of mitotic phosphorylation. (PMID: 18669648) Dephoure N … Gygi SP (Proceedings of the National Academy of Sciences of the United States of America 2008) 4 60
  5. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J … Rubin EM (Nature 2004) 4 60

Products for CCDC125 Gene

Sources for CCDC125 Gene

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