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Aliases for CCDC122 Gene

Aliases for CCDC122 Gene

  • Coiled-Coil Domain Containing 122 2 3

External Ids for CCDC122 Gene

Summaries for CCDC122 Gene

GeneCards Summary for CCDC122 Gene

CCDC122 (Coiled-Coil Domain Containing 122) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC122 Gene

Genomics for CCDC122 Gene

Genomic Location for CCDC122 Gene

Start:
43,823,909 bp from pter
End:
43,879,727 bp from pter
Size:
55,819 bases
Orientation:
Minus strand

Genomic View for CCDC122 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC122 Gene

Regulatory Elements for CCDC122 Gene

Proteins for CCDC122 Gene

  • Protein details for CCDC122 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0U0-CC122_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 122
    Protein Accession:
    Q5T0U0
    Secondary Accessions:
    • B2RP70
    • B7ZMI9
    • Q96MV0

    Protein attributes for CCDC122 Gene

    Size:
    273 amino acids
    Molecular mass:
    32206 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC122 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC122 Gene

Proteomics data for CCDC122 Gene at MOPED

Post-translational modifications for CCDC122 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC122 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC122 Gene

Domains for CCDC122 Gene

Protein Domains for CCDC122 Gene

ProtoNet:
genes like me logo Genes that share domains with CCDC122: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC122 Gene

Function for CCDC122 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CCDC122 Gene

Localization for CCDC122 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC122 Gene COMPARTMENTS Subcellular localization image for CCDC122 gene
Compartment Confidence
cytosol 3
nucleus 3
peroxisome 2

No data available for Gene Ontology (GO) - Cellular Components for CCDC122 Gene

Pathways for CCDC122 Gene

SuperPathways for CCDC122 Gene

No Data Available

Interacting Proteins for CCDC122 Gene

Gene Ontology (GO) - Biological Process for CCDC122 Gene

None

No data available for Pathways by source for CCDC122 Gene

Transcripts for CCDC122 Gene

Unigene Clusters for CCDC122 Gene

Coiled-coil domain containing 122:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC122 Gene

No ASD Table

Relevant External Links for CCDC122 Gene

GeneLoc Exon Structure for
CCDC122
ECgene alternative splicing isoforms for
CCDC122

Expression for CCDC122 Gene

mRNA expression in normal human tissues for CCDC122 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CCDC122 Gene

SOURCE GeneReport for Unigene cluster for CCDC122 Gene Hs.170849

genes like me logo Genes that share expressions with CCDC122: view

Orthologs for CCDC122 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC122 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC122 36
  • 97.13 (n)
  • 95.88 (a)
CCDC122 37
  • 79 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC122 36
  • 87.01 (n)
  • 80.88 (a)
CCDC122 37
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC122 36
  • 89.13 (n)
  • 82.42 (a)
CCDC122 37
  • 82 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc122 36
  • 82.28 (n)
  • 70.26 (a)
Ccdc122 16
Ccdc122 37
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC122 37
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 64 (a)
OneToMany
-- 37
  • 54 (a)
OneToMany
-- 37
  • 59 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ccdc122 36
  • 80.7 (n)
  • 68.42 (a)
chicken
(Gallus gallus)
Aves CCDC122 36
  • 67.06 (n)
  • 56.13 (a)
CCDC122 37
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC122 37
  • 49 (a)
OneToOne
Species with no ortholog for CCDC122:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC122 Gene

ENSEMBL:
Gene Tree for CCDC122 (if available)
TreeFam:
Gene Tree for CCDC122 (if available)

Paralogs for CCDC122 Gene

Selected SIMAP similar genes for CCDC122 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC122: view

No data available for Paralogs for CCDC122 Gene

Variants for CCDC122 Gene

Sequence variations from dbSNP and Humsavar for CCDC122 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs587558 -- 43,860,226(-) TGTGT(G/T)TATTG intron-variant
rs587570 -- 43,860,215(-) CATGT(G/T)TCCTT intron-variant
rs618179 -- 43,867,897(+) TTAAA(A/G)CCAGT intron-variant
rs620030 -- 43,839,299(-) aatgt(A/G)tacaa intron-variant
rs621815 -- 43,852,597(+) accta(G/T)ctaga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC122 Gene

Variant ID Type Subtype PubMed ID
nsv832595 CNV Gain 17160897
esv273426 CNV Insertion 20981092

Relevant External Links for CCDC122 Gene

HapMap Linkage Disequilibrium report
CCDC122

Disorders for CCDC122 Gene

(1) University of Copenhagen DISEASES for CCDC122 Gene

Relevant External Links for CCDC122

Genetic Association Database (GAD)
CCDC122
Human Genome Epidemiology (HuGE) Navigator
CCDC122
genes like me logo Genes that share disorders with CCDC122: view

No data available for UniProtKB/Swiss-Prot for CCDC122 Gene

Publications for CCDC122 Gene

  1. Genomewide association study of leprosy. (PMID: 20018961) Zhang F.R. … Liu J.J. (N. Engl. J. Med. 2009) 3 49
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. (PMID: 17672918) Szafranski K. … Platzer M. (Genome Biol. 2007) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CCDC122 Gene

Sources for CCDC122 Gene

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