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Aliases for CCDC122 Gene

Aliases for CCDC122 Gene

  • Coiled-Coil Domain Containing 122 2 3 5

External Ids for CCDC122 Gene

Previous GeneCards Identifiers for CCDC122 Gene

  • GC13M043309
  • GC13M044398
  • GC13M025212

Summaries for CCDC122 Gene

GeneCards Summary for CCDC122 Gene

CCDC122 (Coiled-Coil Domain Containing 122) is a Protein Coding gene. Diseases associated with CCDC122 include Leprosy.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC122 Gene

Genomics for CCDC122 Gene

Regulatory Elements for CCDC122 Gene

Enhancers for CCDC122 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F043847 1.1 Ensembl ENCODE 39 +31.4 31427 1.4 SOX13 ELF3 SOX5 JUN HLF CEBPB ZNF384 CEBPG EP300 JUND CCDC122 LACC1 ENSG00000274001 LOC105370181
GH13F043878 0.2 ENCODE 31.5 +0.3 259 2.3 ARID4B SIN3A FEZF1 DMAP1 ZNF48 BRCA1 YY1 ZNF121 GLIS2 SP3 CCDC122 LACC1
GH13F043864 1 FANTOM5 ENCODE 30.3 +13.8 13849 2.6 OSR2 KLF1 CEBPB NFE2 MAFK ZBTB20 ZBTB17 NFE2L2 CCDC122 LACC1 ENSG00000274001 LOC105370181
GH13F043881 0.2 Ensembl 27.8 -2.0 -1974 0.2 ZNF316 MAFK CCDC122 LACC1 ENSG00000281883
GH13F043895 0.6 ENCODE 26.6 -16.3 -16299 1.2 BHLHE40 MAFK YY1 CCDC122 ENSG00000280060 GC13M043879
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CCDC122 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC122 Gene

Chromosome:
13
Start:
43,823,909 bp from pter
End:
43,879,727 bp from pter
Size:
55,819 bases
Orientation:
Minus strand

Genomic View for CCDC122 Gene

Genes around CCDC122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC122 Gene

Proteins for CCDC122 Gene

  • Protein details for CCDC122 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0U0-CC122_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 122
    Protein Accession:
    Q5T0U0
    Secondary Accessions:
    • B2RP70
    • B7ZMI9
    • Q96MV0

    Protein attributes for CCDC122 Gene

    Size:
    273 amino acids
    Molecular mass:
    32206 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC122 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC122 Gene

Post-translational modifications for CCDC122 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC122 Gene

No data available for DME Specific Peptides for CCDC122 Gene

Domains & Families for CCDC122 Gene

Protein Domains for CCDC122 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC122 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC122: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC122 Gene

Function for CCDC122 Gene

genes like me logo Genes that share phenotypes with CCDC122: view

Animal Models for CCDC122 Gene

MGI Knock Outs for CCDC122:

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CCDC122 Gene

Localization for CCDC122 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC122 Gene COMPARTMENTS Subcellular localization image for CCDC122 gene
Compartment Confidence
cytosol 3
nucleus 3
peroxisome 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC122 Gene

Pathways & Interactions for CCDC122 Gene

SuperPathways for CCDC122 Gene

No Data Available

Interacting Proteins for CCDC122 Gene

Selected Interacting proteins: Q5T0U0-CC122_HUMAN for CCDC122 Gene via IID

Symbol External ID(s) Details
BORCS6
DLG1

Gene Ontology (GO) - Biological Process for CCDC122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC122 Gene

Transcripts for CCDC122 Gene

Unigene Clusters for CCDC122 Gene

Coiled-coil domain containing 122:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC122 Gene

No ASD Table

Relevant External Links for CCDC122 Gene

GeneLoc Exon Structure for
CCDC122
ECgene alternative splicing isoforms for
CCDC122

Expression for CCDC122 Gene

mRNA expression in normal human tissues for CCDC122 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CCDC122 Gene

This gene is overexpressed in Prostate (40.4), Rectum (21.0), and Urinary Bladder (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC122 Gene



Protein tissue co-expression partners for CCDC122 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCDC122 Gene:

CCDC122

SOURCE GeneReport for Unigene cluster for CCDC122 Gene:

Hs.170849
genes like me logo Genes that share expression patterns with CCDC122: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC122 Gene

Orthologs for CCDC122 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC122 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC122 34 35
  • 97.13 (n)
dog
(Canis familiaris)
Mammalia CCDC122 34 35
  • 89.13 (n)
cow
(Bos Taurus)
Mammalia CCDC122 34 35
  • 87.01 (n)
mouse
(Mus musculus)
Mammalia Ccdc122 34 16 35
  • 82.28 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc122 34
  • 80.7 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC122 35
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 64 (a)
OneToMany
-- 35
  • 59 (a)
OneToMany
-- 35
  • 54 (a)
OneToMany
chicken
(Gallus gallus)
Aves CCDC122 34 35
  • 67.06 (n)
lizard
(Anolis carolinensis)
Reptilia CCDC122 35
  • 49 (a)
OneToOne
Species where no ortholog for CCDC122 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC122 Gene

ENSEMBL:
Gene Tree for CCDC122 (if available)
TreeFam:
Gene Tree for CCDC122 (if available)

Paralogs for CCDC122 Gene

(17) SIMAP similar genes for CCDC122 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC122: view

No data available for Paralogs for CCDC122 Gene

Variants for CCDC122 Gene

Sequence variations from dbSNP and Humsavar for CCDC122 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10161647 -- 43,829,800(+) AATCT(G/T)CCTAA intron-variant
rs10220157 -- 43,833,903(+) CCACT(A/G)AGCAA intron-variant
rs10507521 -- 43,867,698(+) ATAAA(C/G)TCTAT intron-variant
rs1054686 -- 43,859,845(-) ATGCA(C/T)ATTAT reference, missense
rs10565681 -- 43,833,773(+) ATGAC(-/ACA)ACAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC122 Gene

Variant ID Type Subtype PubMed ID
esv3309153 CNV mobile element insertion 20981092
esv3348757 CNV insertion 20981092
esv3631927 CNV gain 21293372
nsv832595 CNV gain 17160897

Variation tolerance for CCDC122 Gene

Residual Variation Intolerance Score: 51.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.98; 36.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC122 Gene

Disorders for CCDC122 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CCDC122 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
leprosy
  • leprosy 2
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CCDC122

Genetic Association Database (GAD)
CCDC122
Human Genome Epidemiology (HuGE) Navigator
CCDC122
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC122
genes like me logo Genes that share disorders with CCDC122: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCDC122 Gene

Publications for CCDC122 Gene

  1. Genomewide association study of leprosy. (PMID: 20018961) Zhang F.R. … Liu J.J. (N. Engl. J. Med. 2009) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. NOD2 and CCDC122-LACC1 genes are associated with leprosy susceptibility in Brazilians. (PMID: 25367361) Sales-Marques C. … Pereira Latini A.C. (Hum. Genet. 2014) 3 64
  5. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. (PMID: 17672918) Szafranski K. … Platzer M. (Genome Biol. 2007) 3 64

Products for CCDC122 Gene

Sources for CCDC122 Gene

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