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Aliases for CCDC122 Gene

Aliases for CCDC122 Gene

  • Coiled-Coil Domain Containing 122 2 3 5

External Ids for CCDC122 Gene

Previous GeneCards Identifiers for CCDC122 Gene

  • GC13M043309
  • GC13M044398
  • GC13M025212

Summaries for CCDC122 Gene

Entrez Gene Summary for CCDC122 Gene

  • This gene encodes a protein that contains a coiled-coil domain. Naturally occurring mutations in this gene are associated with leprosy. [provided by RefSeq, Apr 2017]

GeneCards Summary for CCDC122 Gene

CCDC122 (Coiled-Coil Domain Containing 122) is a Protein Coding gene. Diseases associated with CCDC122 include Leprosy.

Additional gene information for CCDC122 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC122 Gene

Genomics for CCDC122 Gene

Regulatory Elements for CCDC122 Gene

Enhancers for CCDC122 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H043878 1 ENCODE 31.5 +0.3 259 2 ARID4B SIN3A FEZF1 DMAP1 BRCA1 YY1 ZNF121 GLIS2 RUNX3 SP3 CCDC122 LACC1
GH13H043864 0.9 FANTOM5 ENCODE 30.3 +13.8 13849 2 MAFG CEBPB FOS NFE2 MAFK NFE2L2 CCDC122 LACC1 ENSG00000274001 LOC105370181
GH13H043908 0.9 Ensembl ENCODE 25.6 -29.4 -29350 0 CTCF ZNF654 RFX1 ZNF384 RAD21 SMC3 FOS MAFK CCDC122 LACC1 LINC00284 GC13P043936
GH13H043804 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +74.5 74503 1 TBP CTCF ZFP64 RAD21 POLR2A SMC3 ZNF143 FOSL2 FOS ZBTB20 CCDC122 LACC1 ENOX1 LOC105370181 GC13P043791
GH13H043847 0.9 Ensembl ENCODE 18.8 +31.5 31526 0 ELF3 SOX5 SOX13 JUN CEBPB CEBPG ZNF384 EP300 JUND CEBPA LACC1 CCDC122 ENSG00000274001 LOC105370181
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC122 on UCSC Golden Path with GeneCards custom track

Promoters for CCDC122 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000062061 27 1801 ARID4B SIN3A DMAP1 BRCA1 YY1 ZNF121 GLIS2 RUNX3 SP3 MXD4

Genomic Location for CCDC122 Gene

Chromosome:
13
Start:
43,823,909 bp from pter
End:
43,879,727 bp from pter
Size:
55,819 bases
Orientation:
Minus strand

Genomic View for CCDC122 Gene

Genes around CCDC122 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC122 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC122 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC122 Gene

Proteins for CCDC122 Gene

  • Protein details for CCDC122 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0U0-CC122_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 122
    Protein Accession:
    Q5T0U0
    Secondary Accessions:
    • B2RP70
    • B7ZMI9
    • Q96MV0

    Protein attributes for CCDC122 Gene

    Size:
    273 amino acids
    Molecular mass:
    32206 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CCDC122 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC122 Gene

Post-translational modifications for CCDC122 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC122 Gene

No data available for DME Specific Peptides for CCDC122 Gene

Domains & Families for CCDC122 Gene

Gene Families for CCDC122 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC122 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC122 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC122: view

No data available for UniProtKB/Swiss-Prot for CCDC122 Gene

Function for CCDC122 Gene

Phenotypes From GWAS Catalog for CCDC122 Gene

genes like me logo Genes that share phenotypes with CCDC122: view

Animal Models for CCDC122 Gene

MGI Knock Outs for CCDC122:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC122
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CCDC122 Gene

Localization for CCDC122 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC122 gene
Compartment Confidence
nucleus 3
cytosol 3
peroxisome 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleus (2)
  • Vesicles (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC122 Gene

Pathways & Interactions for CCDC122 Gene

SuperPathways for CCDC122 Gene

No Data Available

Interacting Proteins for CCDC122 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000407763%0d%0a9606.ENSP00000373669%0d%0a
Selected Interacting proteins: ENSP00000407763 Q5T0U0-CC122_HUMAN for CCDC122 Gene via STRING IID

Gene Ontology (GO) - Biological Process for CCDC122 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC122 Gene

Drugs & Compounds for CCDC122 Gene

No Compound Related Data Available

Transcripts for CCDC122 Gene

Unigene Clusters for CCDC122 Gene

Coiled-coil domain containing 122:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CCDC122
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC122 Gene

No ASD Table

Relevant External Links for CCDC122 Gene

GeneLoc Exon Structure for
CCDC122
ECgene alternative splicing isoforms for
CCDC122

Expression for CCDC122 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC122 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CCDC122 Gene

This gene is overexpressed in Prostate (40.4), Rectum (21.0), and Urinary Bladder (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CCDC122 Gene



Protein tissue co-expression partners for CCDC122 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CCDC122 Gene:

CCDC122

SOURCE GeneReport for Unigene cluster for CCDC122 Gene:

Hs.170849
genes like me logo Genes that share expression patterns with CCDC122: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC122 Gene

Orthologs for CCDC122 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CCDC122 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC122 33 34
  • 97.13 (n)
dog
(Canis familiaris)
Mammalia CCDC122 33 34
  • 89.13 (n)
cow
(Bos Taurus)
Mammalia CCDC122 33 34
  • 87.01 (n)
mouse
(Mus musculus)
Mammalia Ccdc122 33 16 34
  • 82.28 (n)
rat
(Rattus norvegicus)
Mammalia Ccdc122 33
  • 80.7 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC122 34
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 64 (a)
OneToMany
-- 34
  • 59 (a)
OneToMany
-- 34
  • 54 (a)
OneToMany
chicken
(Gallus gallus)
Aves CCDC122 33 34
  • 67.06 (n)
lizard
(Anolis carolinensis)
Reptilia CCDC122 34
  • 49 (a)
OneToOne
Species where no ortholog for CCDC122 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC122 Gene

ENSEMBL:
Gene Tree for CCDC122 (if available)
TreeFam:
Gene Tree for CCDC122 (if available)

Paralogs for CCDC122 Gene

(17) SIMAP similar genes for CCDC122 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC122: view

No data available for Paralogs for CCDC122 Gene

Variants for CCDC122 Gene

Sequence variations from dbSNP and Humsavar for CCDC122 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000144778 -- 43,854,931(+) CGATT(C/G)ATGTT intron-variant
rs1000225338 -- 43,857,977(+) ATTTA(C/T)TGTTT intron-variant
rs1000296455 -- 43,848,386(+) GTCCT(C/T)TGTCT intron-variant
rs1000316463 -- 43,852,915(+) TAAGA(C/T)CCTTT intron-variant
rs1000340031 -- 43,868,488(+) TTGCA(A/G)TGACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC122 Gene

Variant ID Type Subtype PubMed ID
esv3309153 CNV mobile element insertion 20981092
esv3348757 CNV insertion 20981092
esv3631927 CNV gain 21293372
nsv832595 CNV gain 17160897

Variation tolerance for CCDC122 Gene

Residual Variation Intolerance Score: 51.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.98; 36.58% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC122 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC122

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC122 Gene

Disorders for CCDC122 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CCDC122 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
leprosy
  • leprosy 2
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CCDC122

Genetic Association Database (GAD)
CCDC122
Human Genome Epidemiology (HuGE) Navigator
CCDC122
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC122
genes like me logo Genes that share disorders with CCDC122: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CCDC122 Gene

Publications for CCDC122 Gene

  1. Genomewide association study of leprosy. (PMID: 20018961) Zhang FR … Liu JJ (The New England journal of medicine 2009) 3 45 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. An organelle-specific protein landscape identifies novel diseases and molecular mechanisms. (PMID: 27173435) Boldt K … UK10K Rare Diseases Group (Nature communications 2016) 3 60
  5. Association between genetic variants in NOD2, C13orf31, and CCDC122 genes and leprosy among the Chinese Yi population. (PMID: 26235265) Xiong JH … Ning Y (International journal of dermatology 2016) 3 60

Products for CCDC122 Gene

Sources for CCDC122 Gene

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