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CCDC110 Gene

protein-coding   GIFtS: 45
GCID: GC04M186366

Coiled-Coil Domain Containing 110

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disease database 

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Coiled-Coil Domain Containing 1101 2     CT522 3
Cancer/Testis Antigen 521 2 3     KM-HN-12
KMHN12 3 5     Coiled-Coil Domain-Containing Protein 1102
Cancer/Testis Antigen KM-HN-12 3     

External Ids:    HGNC: 285041   Entrez Gene: 2563092   Ensembl: ENSG000001684917   OMIM: 6094885   UniProtKB: Q8TBZ03   

Export aliases for CCDC110 gene to outside databases

Previous GC identifers: GC04M186604 GC04M182120


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for CCDC110 Gene:
CCDC110 (coiled-coil domain containing 110) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NT_016354.20  NC_018915.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the CCDC110 gene promoter:
         MEF-2A   FAC1   AML1a   Sox9   aMEF-2   GATA-1   Gfi-1   RSRFC4   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidCCDC110 promoter sequence
   Search Chromatin IP Primers for CCDC110

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat CCDC110


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q35.1   Ensembl cytogenetic band:  4q35.1   HGNC cytogenetic band: 4q35.1

CCDC110 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CCDC110 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M186366:  view genomic region     (about GC identifiers)

Start:
186,366,336 bp from pter      End:
186,392,913 bp from pter
Size:
26,578 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: CC110_HUMAN, Q8TBZ0 (See protein sequence)
Recommended Name: Coiled-coil domain-containing protein 110  
Size: 833 amino acids; 96726 Da
Secondary accessions: Q86YI9 Q8N7W0
Alternative splicing: 2 isoforms:  Q8TBZ0-1   Q8TBZ0-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for CCDC110: NX_Q8TBZ0

Explore proteomics data for CCDC110 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See CCDC110 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001138883.1  NP_689988.1  

    ENSEMBL proteins: 
     ENSP00000377172   ENSP00000306776   ENSP00000424878   ENSP00000427246   ENSP00000424520  
     ENSP00000425276   ENSP00000425547  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: Q8TBZ0


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Phenotypes:
         1 GenomeRNAi human phenotype for CCDC110:
     Increased G2M DNA content 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for CCDC110
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    hsa-mir-335-5p (MIRT018095)

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    1 qRT-PCR Assays for microRNA that regulate CCDC110:
    hsa-miR-590-3p
    SwitchGear 3'UTR luciferase reporter plasmidCCDC110 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    CC110_HUMAN, Q8TBZ0: Nucleus
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus5
    golgi apparatus4
    plasma membrane4
    cytosol3

    Gene Ontology (GO): Selected cellular component terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005730nucleolus ----
    GO:0005737cytoplasm ----
    GO:0005794Golgi apparatus ----
    GO:0005886plasma membrane ----

    Find genes that share ontologies with CCDC110           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for CCDC110
    Interactions:

        Search GeneGlobe Interaction Network for CCDC110

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for CCDC110 (CC110)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for CCDC110 gene (2 alternative transcripts): 
    NM_001145411.1  NM_152775.3  

    Unigene Cluster for CCDC110:

    Coiled-coil domain containing 110
    Hs.41101  [show with all ESTs]
    Unigene Representative Sequence: AL833337
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000393540 ENST00000307588(uc003ixu.4 uc003ixv.4) ENST00000508538
    ENST00000510617(uc011ckt.1) ENST00000510481 ENST00000506876 ENST00000507501
    ENST00000506962 ENST00000504020
    miRNA
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    1 qRT-PCR Assays for microRNA that regulate CCDC110:
    hsa-miR-590-3p
    SwitchGear 3'UTR luciferase reporter plasmidCCDC110 3' UTR sequence
    Inhib. RNA
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    Additional mRNA sequence: 

    AB080722.1 AK097605.1 AK302815.1 AL833337.1 BC028419.1 BC038515.1 BX641119.1 

    6 DOTS entries:

    DT.208954  DT.95156887  DT.100751661  DT.97800405  DT.99984503  DT.208953 

    Selected AceView cDNA sequences (see all 63):

    AK097605 AI201289 BU854088 BU160051 BQ439923 BQ428725 BQ438408 BU854677 
    BU561479 AI223408 AW303582 CD557413 BQ435564 BQ286758 BG722000 BQ429436 
    CA393845 BQ428779 BI464244 BC028419 AW959242 AI949455 AI139838 BQ435578 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for CCDC110 (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b
    SP1:              -                                                                     
    SP2:              -           -                                                         
    SP3:                                                                                    
    SP4:                                      -     -                                       
    SP5:                                                                                    


    ECgene alternative splicing isoforms for CCDC110

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    CCDC110 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GAAGGAGCTG
    CCDC110 Expression
    About this image

    CCDC110 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    CCDC110 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.41101

    UniProtKB/Swiss-Prot: CC110_HUMAN, Q8TBZ0
    Tissue specificity: Expressed specifically in testis. Also expressed in tumors of different origins

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for CCDC110 gene from Selected species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Ccdc1101 , 5 coiled-coil domain containing 1101, 5 75.04(n)1
    70.17(a)1
      8 (25.92 cM)5
    2123921  NM_001033246.21  NP_001028418.11 
     459346195 
    chicken
    (Gallus gallus)
    Aves CCDC1101 coiled-coil domain containing 110 56.15(n)
    36.93(a)
      101750861  XM_004935976.1  XP_004936033.1 
    lizard
    (Anolis carolinensis)
    Reptilia CCDC1106
    coiled-coil domain containing 110
    26(a)
    1 ↔ 1
    5(112811696-112829413)


    ENSEMBL Gene Tree for CCDC110 (if available)
    TreeFam Gene Tree for CCDC110 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for CCDC110 gene
    1 SIMAP similar gene for CCDC110 using alignment to 6 protein entries:     CC110_HUMAN (see all proteins):
    KM-HN-1

    Find genes that share paralogs with CCDC110           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for CCDC110 (see all 603)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1454350951,2
    --186371333(+) ATAACA/GTGCCC 2 -- int10--------
    rs1919483171,2
    --186371354(+) ACTTAC/TGTAAA 2 -- int10--------
    rs581756661,2
    C,F--186371356(+) TTATGT/CAAAGC 2 -- int13Minor allele frequency- C:0.05WA CSA 122
    rs1829665681,2
    --186371379(+) AGCCAA/GTGGCA 2 -- int10--------
    rs1874792721,2
    --186371431(+) TAGTTC/GAGTAT 2 -- int10--------
    rs753139721,2
    C,F--186371433(+) GTTGAG/ATATCT 2 -- int11Minor allele frequency- A:0.04NA 120
    rs1932402751,2
    --186371674(+) GAGTCC/GGGTGG 2 -- int10--------
    rs100319731,2
    C--186371703(+) cgagaC/Tcagcc 2 -- int10--------
    rs598484951,2
    --186371736(+) TCTCTA/GCTAAC 2 -- int10--------
    rs1430331701,2
    --186371769(+) GGTGGC/TGTGTG 2 -- int10--------

    HapMap Linkage Disequilibrium report for CCDC110 (186366336 - 186392913 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 9 variations for CCDC110:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv4638CNV Insertion18451855
    esv267647CNV Insertion20981092
    esv2575908CNV Insertion19546169
    esv272660CNV Insertion20981092
    nsv881506CNV Gain21882294
    nsv527026CNV Gain19592680
    nsv517035CNV Gain+Loss19592680
    nsv428456CNV Gain+Loss18775914
    dgv1724e1CNV Complex17122850

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 609488    OMIM disorders: --


    Find genes that share disorders with CCDC110           About GenesLikeMe


    Export disorders for CCDC110 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for CCDC110 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with CCDC110)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The centrosomal localization of KM-HN-1 (MGC33607) depends on the leucine zipper motif and the C-terminal coiled-coil domain. (PubMed id 18160854)1, 3 Park H.J....Seong Y.S. (amp 2007)
    2. Identification of a novel human cancer/testis antigen, KM-HN-1, recognized by cellular and humoral immune responses. (PubMed id 15447989)1, 2 Monji M.... Nishimura Y. (Clin. Cancer Res. 2004)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    5. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (Cell 2010)
    6. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 256309 HGNC: 28504 AceView: MGC33607 Ensembl:ENSG00000168491 euGenes: HUgn256309
    ECgene: CCDC110 H-InvDB: CCDC110

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for CCDC110 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for CCDC110 gene:
    Search GeneIP for patents involving CCDC110

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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