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Aliases for CCDC107 Gene

Aliases for CCDC107 Gene

  • Coiled-Coil Domain Containing 107 2 3 5
  • PSEC0222 3

External Ids for CCDC107 Gene

Previous GeneCards Identifiers for CCDC107 Gene

  • GC09P035649
  • GC09P035613

Summaries for CCDC107 Gene

Entrez Gene Summary for CCDC107 Gene

  • This gene encodes a membrane protein which contains a coiled-coil domain in the central region. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2013]

GeneCards Summary for CCDC107 Gene

CCDC107 (Coiled-Coil Domain Containing 107) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC107 Gene

Genomics for CCDC107 Gene

Regulatory Elements for CCDC107 Gene

Promoters for CCDC107 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CCDC107 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCDC107 Gene

Chromosome:
9
Start:
35,658,282 bp from pter
End:
35,661,511 bp from pter
Size:
3,230 bases
Orientation:
Plus strand

Genomic View for CCDC107 Gene

Genes around CCDC107 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC107 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC107 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC107 Gene

Proteins for CCDC107 Gene

  • Protein details for CCDC107 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WV48-CC107_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 107
    Protein Accession:
    Q8WV48
    Secondary Accessions:
    • A6XND6
    • Q5T4R5
    • Q5T4R8
    • Q5T4R9
    • Q86VB6
    • Q8N2E4

    Protein attributes for CCDC107 Gene

    Size:
    283 amino acids
    Molecular mass:
    30509 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI13448.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC107 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC107 Gene

Proteomics data for CCDC107 Gene at MOPED

Post-translational modifications for CCDC107 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Antibody Products

No data available for DME Specific Peptides for CCDC107 Gene

Domains & Families for CCDC107 Gene

Protein Domains for CCDC107 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC107 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC107: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC107 Gene

Function for CCDC107 Gene

genes like me logo Genes that share phenotypes with CCDC107: view

Animal Model Products

CRISPR Products

miRNA for CCDC107 Gene

miRTarBase miRNAs that target CCDC107

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC107 Gene

Localization for CCDC107 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CCDC107 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC107 Gene COMPARTMENTS Subcellular localization image for CCDC107 gene
Compartment Confidence
cytosol 2
nucleus 2
plasma membrane 2
endoplasmic reticulum 1
extracellular 1

No data available for Gene Ontology (GO) - Cellular Components for CCDC107 Gene

Pathways & Interactions for CCDC107 Gene

SuperPathways for CCDC107 Gene

No Data Available

Interacting Proteins for CCDC107 Gene

Gene Ontology (GO) - Biological Process for CCDC107 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC107 Gene

Drugs & Compounds for CCDC107 Gene

No Compound Related Data Available

Transcripts for CCDC107 Gene

Unigene Clusters for CCDC107 Gene

Coiled-coil domain containing 107:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC107 Gene

No ASD Table

Relevant External Links for CCDC107 Gene

GeneLoc Exon Structure for
CCDC107
ECgene alternative splicing isoforms for
CCDC107

Expression for CCDC107 Gene

mRNA expression in normal human tissues for CCDC107 Gene

Protein differential expression in normal tissues from HIPED for CCDC107 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC107 Gene



SOURCE GeneReport for Unigene cluster for CCDC107 Gene Hs.745107

genes like me logo Genes that share expression patterns with CCDC107: view

Protein tissue co-expression partners for CCDC107 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CCDC107 Gene

Orthologs for CCDC107 Gene

This gene was present in the common ancestor of mammals.

Orthologs for CCDC107 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC107 35
  • 98.7 (n)
  • 97.66 (a)
CCDC107 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC107 36
  • 69 (a)
OneToOne
CCDC107 35
  • 81.7 (n)
  • 70.2 (a)
dog
(Canis familiaris)
Mammalia CCDC107 35
  • 85.19 (n)
  • 76.39 (a)
CCDC107 36
  • 61 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc107 36
  • 64 (a)
OneToOne
Ccdc107 16
Ccdc107 35
  • 76.68 (n)
  • 66.67 (a)
rat
(Rattus norvegicus)
Mammalia Ccdc107 35
  • 76.98 (n)
  • 69.92 (a)
Species with no ortholog for CCDC107:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CCDC107 Gene

ENSEMBL:
Gene Tree for CCDC107 (if available)
TreeFam:
Gene Tree for CCDC107 (if available)

Paralogs for CCDC107 Gene

Pseudogenes.org Pseudogenes for CCDC107 Gene

genes like me logo Genes that share paralogs with CCDC107: view

No data available for Paralogs for CCDC107 Gene

Variants for CCDC107 Gene

Sequence variations from dbSNP and Humsavar for CCDC107 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
VAR_031406 -
VAR_031407 -
VAR_031408 -
rs1934159 -- 35,656,830(-) TTTCA(C/T)TTTCT upstream-variant-2KB
rs1934160 -- 35,656,677(-) TCTCA(C/T)GAGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CCDC107 Gene

Variant ID Type Subtype PubMed ID
dgv8168n71 CNV Gain 21882294

Variation tolerance for CCDC107 Gene

Residual Variation Intolerance Score: 84.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.44; 71.41% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC107 Gene

HapMap Linkage Disequilibrium report
CCDC107

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC107 Gene

Disorders for CCDC107 Gene

Relevant External Links for CCDC107

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC107

No disorders were found for CCDC107 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC107 Gene

Publications for CCDC107 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  4. Toward an understanding of the protein interaction network of the human liver. (PMID: 21988832) Wang J. … Yang X. (Mol. Syst. Biol. 2011) 3
  5. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PMID: 16713569) Lim J. … Zoghbi H.Y. (Cell 2006) 3

Products for CCDC107 Gene

Sources for CCDC107 Gene

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