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Aliases for CCDC102B Gene

Aliases for CCDC102B Gene

  • Coiled-Coil Domain Containing 102B 2 3
  • C18orf14 3 4
  • Coiled-Coil Domain-Containing Protein 102B 3
  • Chromosome 18 Open Reading Frame 14 2
  • Aminoacylase 1-Like 2
  • HsT1731 3
  • ACY1L 3
  • AN 3

External Ids for CCDC102B Gene

Previous Symbols for CCDC102B Gene

  • C18orf14
  • ACY1L

Summaries for CCDC102B Gene

GeneCards Summary for CCDC102B Gene

CCDC102B (Coiled-Coil Domain Containing 102B) is a Protein Coding gene. An important paralog of this gene is CCDC102A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC102B Gene

Genomics for CCDC102B Gene

Genomic Location for CCDC102B Gene

Start:
68,715,209 bp from pter
End:
69,089,280 bp from pter
Size:
374,072 bases
Orientation:
Plus strand

Genomic View for CCDC102B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC102B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC102B Gene

Regulatory Elements for CCDC102B Gene

Proteins for CCDC102B Gene

  • Protein details for CCDC102B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q68D86-C102B_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 102B
    Protein Accession:
    Q68D86
    Secondary Accessions:
    • Q7Z467
    • Q8NDK7
    • Q9H5C1

    Protein attributes for CCDC102B Gene

    Size:
    513 amino acids
    Molecular mass:
    60448 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH56269.1; Type=Miscellaneous discrepancy; Note=wrong intron-exon boundaries.; Evidence={ECO:0000305}; Sequence=BAB15706.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD38721.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD38721.2; Type=Frameshift; Positions=200; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC102B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC102B Gene

Proteomics data for CCDC102B Gene at MOPED

Post-translational modifications for CCDC102B Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCDC102B Gene

Domains for CCDC102B Gene

Protein Domains for CCDC102B Gene

ProtoNet:
genes like me logo Genes that share domains with CCDC102B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC102B Gene

Function for CCDC102B Gene

Phenotypes for CCDC102B Gene

genes like me logo Genes that share phenotypes with CCDC102B: view

miRNA for CCDC102B Gene

miRTarBase miRNAs that target CCDC102B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CCDC102B Gene

Localization for CCDC102B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC102B Gene COMPARTMENTS Subcellular localization image for CCDC102B gene
Compartment Confidence
cytosol 3
nucleus 2
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for CCDC102B Gene

Pathways for CCDC102B Gene

SuperPathways for CCDC102B Gene

No Data Available

Interacting Proteins for CCDC102B Gene

Gene Ontology (GO) - Biological Process for CCDC102B Gene

None

No data available for Pathways by source for CCDC102B Gene

Transcripts for CCDC102B Gene

Unigene Clusters for CCDC102B Gene

Coiled-coil domain containing 102B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC102B Gene

No ASD Table

Relevant External Links for CCDC102B Gene

GeneLoc Exon Structure for
CCDC102B
ECgene alternative splicing isoforms for
CCDC102B

Expression for CCDC102B Gene

mRNA expression in normal human tissues for CCDC102B Gene

mRNA differential expression in normal tissues according to GTEx for CCDC102B Gene

This gene is overexpressed in Lung (6.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CCDC102B Gene

SOURCE GeneReport for Unigene cluster for CCDC102B Gene Hs.280781

genes like me logo Genes that share expressions with CCDC102B: view

Orthologs for CCDC102B Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC102B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC102B 36
  • 98.77 (n)
  • 97.66 (a)
CCDC102B 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC102B 36
  • 81.33 (n)
  • 73.57 (a)
CCDC102B 37
  • 67 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC102B 36
  • 83.3 (n)
  • 77.22 (a)
CCDC102B 37
  • 75 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC102B 37
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC102B 37
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC102B 37
  • 42 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F53F10.1 37
  • 32 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 29 (a)
OneToMany
-- 37
  • 30 (a)
OneToMany
Species with no ortholog for CCDC102B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for CCDC102B Gene

ENSEMBL:
Gene Tree for CCDC102B (if available)
TreeFam:
Gene Tree for CCDC102B (if available)

Paralogs for CCDC102B Gene

Paralogs for CCDC102B Gene

Selected SIMAP similar genes for CCDC102B Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with CCDC102B: view

Variants for CCDC102B Gene

Sequence variations from dbSNP and Humsavar for CCDC102B Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type MAF
rs4105 -- 68,855,602(+) TCAGT(A/G)TATAT intron-variant
rs309229 -- 68,729,257(-) gtatc(C/T)tgtga intron-variant
rs309230 -- 68,728,946(-) ttttt(A/T)aaaaa intron-variant
rs309231 -- 68,728,279(-) TTATA(C/T)GTTAG intron-variant
rs309232 -- 68,727,946(-) GGGGT(A/C)TCTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC102B Gene

Variant ID Type Subtype PubMed ID
nsv458117 CNV Gain 19166990
esv847 CNV CNV 17122850
dgv1044e1 CNV Complex 17122850
dgv3446n71 CNV Gain 21882294
esv268163 CNV Insertion 20981092
esv274202 CNV Insertion 20981092
esv1283313 CNV Insertion 17803354
esv2094660 CNV Deletion 18987734
esv2717282 CNV Deletion 23290073
nsv909809 CNV Gain 21882294
nsv833684 CNV Loss 17160897
nsv507880 CNV Insertion 20534489
nsv458144 CNV Gain 19166990
esv1339608 CNV Insertion 17803354
nsv520275 CNV Loss 19592680
esv9513 CNV Gain 19470904
esv2597360 CNV Insertion 19546169
esv273600 CNV Insertion 20981092
esv271308 CNV Insertion 20981092
nsv131067 CNV Insertion 16902084
esv1721304 CNV Insertion 17803354
nsv528146 CNV Loss 19592680
nsv510463 CNV Loss 20534489
esv2717283 CNV Deletion 23290073
nsv909810 CNV Loss 21882294
nsv909811 CNV Loss 21882294
nsv909812 CNV Loss 21882294
dgv3447n71 CNV Loss 21882294
nsv524761 CNV Loss 19592680
nsv470431 CNV Gain 18288195
nsv909817 CNV Loss 21882294
nsv458147 CNV Loss 19166990
dgv3448n71 CNV Loss 21882294
nsv470432 CNV Loss 18288195
nsv526548 CNV Loss 19592680
nsv527349 CNV Loss 19592680
nsv458168 CNV Loss 19166990
esv2653298 CNV Deletion 19546169
nsv458171 CNV Gain 19166990

Relevant External Links for CCDC102B Gene

HapMap Linkage Disequilibrium report
CCDC102B

Disorders for CCDC102B Gene

(1) University of Copenhagen DISEASES for CCDC102B Gene

Relevant External Links for CCDC102B

Genetic Association Database (GAD)
CCDC102B
Human Genome Epidemiology (HuGE) Navigator
CCDC102B
genes like me logo Genes that share disorders with CCDC102B: view

No data available for UniProtKB/Swiss-Prot for CCDC102B Gene

Publications for CCDC102B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49
  4. Genome-wide association study of liver enzymes in korean children. (PMID: 24124411) Park T.J. … Lee J.Y. (Genomics Inform 2013) 3
  5. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3

Products for CCDC102B Gene

Sources for CCDC102B Gene

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