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Aliases for CCDC102B Gene

Aliases for CCDC102B Gene

  • Coiled-Coil Domain Containing 102B 2 3 5
  • C18orf14 3 4
  • Coiled-Coil Domain-Containing Protein 102B 3
  • Chromosome 18 Open Reading Frame 14 2
  • Aminoacylase 1-Like 2
  • HsT1731 3
  • ACY1L 3
  • AN 3

External Ids for CCDC102B Gene

Previous HGNC Symbols for CCDC102B Gene

  • C18orf14
  • ACY1L

Previous GeneCards Identifiers for CCDC102B Gene

  • GC18P064616
  • GC18P064533
  • GC18P066382
  • GC18P063100

Summaries for CCDC102B Gene

GeneCards Summary for CCDC102B Gene

CCDC102B (Coiled-Coil Domain Containing 102B) is a Protein Coding gene. An important paralog of this gene is CCDC102A.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC102B Gene

Genomics for CCDC102B Gene

Regulatory Elements for CCDC102B Gene

Enhancers for CCDC102B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G068839 1.3 FANTOM5 Ensembl ENCODE 5.6 +126.1 126114 3.4 JUN BHLHE40 HLF CEBPB ZNF384 CEBPG EP300 JUND ATF3 CEBPA CCDC102B GC18M068825 GC18P068859
GH18G068837 0.8 Ensembl ENCODE 6 +122.8 122840 1.9 JUND SMARCA4 JUN CEBPB MNT FOS RNU6-39P CCDC102B GC18M068825 GC18P068859
GH18G068816 0.8 FANTOM5 ENCODE 4.4 +102.5 102527 1.6 BHLHE40 FOS NFE2L2 RNU6-39P CCDC102B GC18M068825 ENSG00000263637
GH18G068757 0.2 ENCODE 12 +42.2 42170 0.2 CCDC102B ENSG00000263637 GC18M068825
GH18G068713 1.1 ENCODE 0.7 -0.3 -341 2.0 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 SP3 SP5 MXD4 CCDC102B GC18P068615
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC102B on UCSC Golden Path with GeneCards custom track

Promoters for CCDC102B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000104723 -309 2600 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 SP3 SP5 MXD4

Genomic Location for CCDC102B Gene

Chromosome:
18
Start:
68,715,209 bp from pter
End:
69,171,081 bp from pter
Size:
455,873 bases
Orientation:
Plus strand

Genomic View for CCDC102B Gene

Genes around CCDC102B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC102B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC102B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC102B Gene

Proteins for CCDC102B Gene

  • Protein details for CCDC102B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q68D86-C102B_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 102B
    Protein Accession:
    Q68D86
    Secondary Accessions:
    • Q7Z467
    • Q8NDK7
    • Q9H5C1

    Protein attributes for CCDC102B Gene

    Size:
    513 amino acids
    Molecular mass:
    60448 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH56269.1; Type=Miscellaneous discrepancy; Note=wrong intron-exon boundaries.; Evidence={ECO:0000305}; Sequence=BAB15706.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD38721.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD38721.2; Type=Frameshift; Positions=200; Evidence={ECO:0000305};

    Alternative splice isoforms for CCDC102B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CCDC102B Gene

Post-translational modifications for CCDC102B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CCDC102B Gene

Domains & Families for CCDC102B Gene

Protein Domains for CCDC102B Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CCDC102B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC102B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC102B Gene

Function for CCDC102B Gene

Phenotypes for CCDC102B Gene

genes like me logo Genes that share phenotypes with CCDC102B: view

Animal Model Products

CRISPR Products

miRNA for CCDC102B Gene

miRTarBase miRNAs that target CCDC102B

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC102B Gene

Localization for CCDC102B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC102B gene
Compartment Confidence
cytosol 4
mitochondrion 2
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CCDC102B Gene

Pathways & Interactions for CCDC102B Gene

SuperPathways for CCDC102B Gene

No Data Available

Interacting Proteins for CCDC102B Gene

Gene Ontology (GO) - Biological Process for CCDC102B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CCDC102B Gene

Drugs & Compounds for CCDC102B Gene

No Compound Related Data Available

Transcripts for CCDC102B Gene

Unigene Clusters for CCDC102B Gene

Coiled-coil domain containing 102B:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC102B Gene

No ASD Table

Relevant External Links for CCDC102B Gene

GeneLoc Exon Structure for
CCDC102B
ECgene alternative splicing isoforms for
CCDC102B

Expression for CCDC102B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC102B Gene

mRNA differential expression in normal tissues according to GTEx for CCDC102B Gene

This gene is overexpressed in Lung (x6.9).

Protein differential expression in normal tissues from HIPED for CCDC102B Gene

This gene is overexpressed in Esophagus (63.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CCDC102B Gene



Protein tissue co-expression partners for CCDC102B Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC102B Gene:

CCDC102B

SOURCE GeneReport for Unigene cluster for CCDC102B Gene:

Hs.280781
genes like me logo Genes that share expression patterns with CCDC102B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC102B Gene

Orthologs for CCDC102B Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC102B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC102B 34 35
  • 98.77 (n)
dog
(Canis familiaris)
Mammalia CCDC102B 34 35
  • 83.3 (n)
cow
(Bos Taurus)
Mammalia CCDC102B 34 35
  • 81.33 (n)
oppossum
(Monodelphis domestica)
Mammalia CCDC102B 35
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC102B 35
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC102B 35
  • 42 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea F53F10.1 35
  • 32 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 30 (a)
OneToMany
-- 35
  • 29 (a)
OneToMany
Species where no ortholog for CCDC102B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for CCDC102B Gene

ENSEMBL:
Gene Tree for CCDC102B (if available)
TreeFam:
Gene Tree for CCDC102B (if available)

Paralogs for CCDC102B Gene

Paralogs for CCDC102B Gene

(1) SIMAP similar genes for CCDC102B Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with CCDC102B: view

Variants for CCDC102B Gene

Sequence variations from dbSNP and Humsavar for CCDC102B Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000007056 -- 68,734,501(+) ATTTT(A/G)TGCGT intron-variant
rs1000009952 -- 69,115,344(+) AGCTG(G/T)TATTA intron-variant
rs1000012259 -- 69,157,264(+) GGAAT(G/T)TTTAA intron-variant
rs1000017956 -- 68,793,328(+) CTAAG(C/G)TCCAC intron-variant
rs1000019162 -- 69,054,797(+) ATCTG(A/G)ATAGA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CCDC102B Gene

Variant ID Type Subtype PubMed ID
dgv3390n100 CNV gain 25217958
dgv6022n54 CNV loss 21841781
dgv6023n54 CNV loss 21841781
dgv6024n54 CNV loss 21841781
dgv6025n54 CNV loss 21841781
dgv6026n54 CNV gain 21841781
esv1283313 CNV insertion 17803354
esv1339608 CNV insertion 17803354
esv1721304 CNV insertion 17803354
esv2094660 CNV deletion 18987734
esv2597360 CNV insertion 19546169
esv2653298 CNV deletion 19546169
esv2717282 CNV deletion 23290073
esv2717283 CNV deletion 23290073
esv2758736 CNV gain+loss 17122850
esv3400309 CNV insertion 20981092
esv3404232 CNV insertion 20981092
esv3404524 CNV insertion 20981092
esv3424253 CNV insertion 20981092
esv3574164 CNV gain 25503493
esv3583130 CNV loss 25503493
esv3642948 CNV loss 21293372
esv3642952 CNV loss 21293372
esv3642954 CNV loss 21293372
esv3642955 CNV loss 21293372
esv3642957 CNV loss 21293372
esv3893127 CNV gain 25118596
esv3893130 CNV loss 25118596
esv9513 CNV gain 19470904
nsv1058755 CNV gain 25217958
nsv1065082 CNV loss 25217958
nsv1123189 CNV deletion 24896259
nsv1133064 OTHER inversion 24896259
nsv1138639 CNV deletion 24896259
nsv1139686 CNV duplication 24896259
nsv131067 CNV insertion 16902084
nsv458117 CNV gain 19166990
nsv458144 CNV gain 19166990
nsv458147 CNV loss 19166990
nsv458168 CNV loss 19166990
nsv458171 CNV gain 19166990
nsv470431 CNV gain 18288195
nsv470432 CNV loss 18288195
nsv507880 OTHER sequence alteration 20534489
nsv510463 OTHER sequence alteration 20534489
nsv520275 CNV loss 19592680
nsv524761 CNV loss 19592680
nsv526548 CNV loss 19592680
nsv527349 CNV loss 19592680
nsv528146 CNV loss 19592680
nsv577329 CNV gain 21841781
nsv577369 CNV gain 21841781
nsv577370 CNV gain 21841781
nsv577371 CNV loss 21841781
nsv577372 CNV loss 21841781
nsv577373 CNV loss 21841781
nsv577374 CNV loss 21841781
nsv577375 CNV loss 21841781
nsv577376 CNV loss 21841781
nsv577378 CNV loss 21841781
nsv577382 CNV loss 21841781
nsv577388 CNV loss 21841781
nsv577390 CNV loss 21841781
nsv577394 CNV loss 21841781
nsv577395 CNV gain 21841781
nsv833684 CNV loss 17160897

Variation tolerance for CCDC102B Gene

Residual Variation Intolerance Score: 94.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 12.25; 94.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC102B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CCDC102B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC102B Gene

Disorders for CCDC102B Gene

Relevant External Links for CCDC102B

Genetic Association Database (GAD)
CCDC102B
Human Genome Epidemiology (HuGE) Navigator
CCDC102B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC102B

No disorders were found for CCDC102B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC102B Gene

Publications for CCDC102B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for CCDC102B Gene

Sources for CCDC102B Gene

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