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Aliases for CCDC102A Gene

Aliases for CCDC102A Gene

  • Coiled-Coil Domain Containing 102A 2 3

External Ids for CCDC102A Gene

Previous GeneCards Identifiers for CCDC102A Gene

  • GC16M056104
  • GC16M043413

Summaries for CCDC102A Gene

GeneCards Summary for CCDC102A Gene

CCDC102A (Coiled-Coil Domain Containing 102A) is a Protein Coding gene. An important paralog of this gene is CCDC102B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC102A Gene

Genomics for CCDC102A Gene

Regulatory Elements for CCDC102A Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CCDC102A Gene

Chromosome:
16
Start:
57,512,178 bp from pter
End:
57,537,130 bp from pter
Size:
24,953 bases
Orientation:
Minus strand

Genomic View for CCDC102A Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CCDC102A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC102A Gene

Proteins for CCDC102A Gene

  • Protein details for CCDC102A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96A19-C102A_HUMAN
    Recommended name:
    Coiled-coil domain-containing protein 102A
    Protein Accession:
    Q96A19
    Secondary Accessions:
    • Q9BT74

    Protein attributes for CCDC102A Gene

    Size:
    550 amino acids
    Molecular mass:
    62596 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC102A Gene

Proteomics data for CCDC102A Gene at MOPED

Post-translational modifications for CCDC102A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC102A Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for CCDC102A Gene

Domains & Families for CCDC102A Gene

Protein Domains for CCDC102A Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CCDC102A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC102A: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CCDC102A Gene

Function for CCDC102A Gene

Gene Ontology (GO) - Molecular Function for CCDC102A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003774 motor activity IEA --
genes like me logo Genes that share ontologies with CCDC102A: view

Phenotypes for CCDC102A Gene

genes like me logo Genes that share phenotypes with CCDC102A: view

Animal Model Products

CRISPR Products

miRNA for CCDC102A Gene

miRTarBase miRNAs that target CCDC102A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC102A Gene

Localization for CCDC102A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CCDC102A Gene COMPARTMENTS Subcellular localization image for CCDC102A gene
Compartment Confidence
nucleus 2

Gene Ontology (GO) - Cellular Components for CCDC102A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016459 myosin complex IEA --
genes like me logo Genes that share ontologies with CCDC102A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCDC102A Gene

Pathways & Interactions for CCDC102A Gene

SuperPathways for CCDC102A Gene

No Data Available

Interacting Proteins for CCDC102A Gene

Gene Ontology (GO) - Biological Process for CCDC102A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with CCDC102A: view

No data available for Pathways by source and SIGNOR curated interactions for CCDC102A Gene

Drugs & Compounds for CCDC102A Gene

No Compound Related Data Available

Transcripts for CCDC102A Gene

mRNA/cDNA for CCDC102A Gene

Unigene Clusters for CCDC102A Gene

Coiled-coil domain containing 102A:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CCDC102A

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC102A Gene

No ASD Table

Relevant External Links for CCDC102A Gene

GeneLoc Exon Structure for
CCDC102A
ECgene alternative splicing isoforms for
CCDC102A

Expression for CCDC102A Gene

mRNA expression in normal human tissues for CCDC102A Gene

Protein differential expression in normal tissues from HIPED for CCDC102A Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (32.0) and Heart (24.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MOPED, and MaxQB for CCDC102A Gene



SOURCE GeneReport for Unigene cluster for CCDC102A Gene Hs.644611

genes like me logo Genes that share expression patterns with CCDC102A: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CCDC102A Gene

Orthologs for CCDC102A Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC102A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CCDC102A 35
  • 91.14 (n)
  • 95.08 (a)
CCDC102A 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC102A 35
  • 88.91 (n)
  • 90.55 (a)
CCDC102A 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc102a 35
  • 86.04 (n)
  • 92.53 (a)
Ccdc102a 16
Ccdc102a 36
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc102a 35
  • 86.58 (n)
  • 91.8 (a)
oppossum
(Monodelphis domestica)
Mammalia CCDC102A 36
  • 64 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CCDC102A 36
  • 99 (a)
OneToOne
chicken
(Gallus gallus)
Aves CCDC102A 35
  • 78.27 (n)
  • 77.09 (a)
CCDC102A 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC102A 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc102a 35
  • 64.16 (n)
  • 69.17 (a)
zebrafish
(Danio rerio)
Actinopterygii ccdc102a 35
  • 68.7 (n)
  • 70.66 (a)
wufc66e01 35
ccdc102a 36
  • 63 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007348 35
  • 56.09 (n)
  • 48.18 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG31638 35
  • 55.36 (n)
  • 47.42 (a)
CG31638 36
  • 30 (a)
OneToOne
Species with no ortholog for CCDC102A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC102A Gene

ENSEMBL:
Gene Tree for CCDC102A (if available)
TreeFam:
Gene Tree for CCDC102A (if available)

Paralogs for CCDC102A Gene

Paralogs for CCDC102A Gene

(2) SIMAP similar genes for CCDC102A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC102A: view

Variants for CCDC102A Gene

Sequence variations from dbSNP and Humsavar for CCDC102A Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs635173 -- 57,524,138(-) ACATG(G/T)TTCTG intron-variant
rs636002 -- 57,521,763(+) TAGGT(A/T)ACAAG intron-variant
rs676991 -- 57,524,596(-) TCTCT(A/C)TATAT intron-variant
rs677983 -- 57,524,341(-) GTTCC(A/C)GAGCA intron-variant
rs867142 -- 57,513,474(+) GAGGG(G/T)CACAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC102A Gene

Variant ID Type Subtype PubMed ID
nsv833245 CNV Loss 17160897
nsv906725 CNV Loss 21882294
nsv906726 CNV Loss 21882294
nsv906727 CNV Loss 21882294
nsv906728 CNV Loss 21882294
esv28778 CNV Loss 19812545

Variation tolerance for CCDC102A Gene

Residual Variation Intolerance Score: 41.24% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.57; 30.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC102A Gene

HapMap Linkage Disequilibrium report
CCDC102A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC102A Gene

Disorders for CCDC102A Gene

Relevant External Links for CCDC102A

Human Genome Epidemiology (HuGE) Navigator
CCDC102A
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CCDC102A
genes like me logo Genes that share disorders with CCDC102A: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC102A Gene

Publications for CCDC102A Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  3. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 67
  4. Novel susceptibility genes associated with diabetic cataract in a Taiwanese population. (PMID: 23137000) Lin H.J. … Tsai F.J. (Ophthalmic Genet. 2013) 67
  5. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PMID: 20068231) Olsen J.V. … Mann M. (Sci. Signal. 2010) 67

Products for CCDC102A Gene

Sources for CCDC102A Gene

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