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Aliases for CCDC102A Gene

Aliases for CCDC102A Gene

  • Coiled-Coil Domain Containing 102A 2 3 5

External Ids for CCDC102A Gene

Previous GeneCards Identifiers for CCDC102A Gene

  • GC16M056104
  • GC16M043413

Summaries for CCDC102A Gene

GeneCards Summary for CCDC102A Gene

CCDC102A (Coiled-Coil Domain Containing 102A) is a Protein Coding gene. An important paralog of this gene is CCDC102B.

Additional gene information for CCDC102A Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCDC102A Gene

Genomics for CCDC102A Gene

Regulatory Elements for CCDC102A Gene

Enhancers for CCDC102A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H057531 1.8 FANTOM5 Ensembl ENCODE dbSUPER 15.2 +1.3 1317 8.1 HDGF PKNOX1 ZFP64 ARID4B GLIS2 ZNF143 ZNF207 ATF7 KLF7 FOS CCDC102A DOK4 ADGRG5 PIR39147
GH16H058391 1.2 ENCODE 19.4 -855.6 -855572 1.8 HDGF ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 CNOT1 CCDC102A POLR2C SETD6 LINC02137 ENSG00000276131 RNU6-1110P
GH16H057542 1.5 Ensembl ENCODE dbSUPER 14.7 -6.8 -6828 4 HDGF PKNOX1 ATF1 SIN3A TCF12 ZNF766 CBX5 ZNF143 ZNF207 ATF7 CCDC102A ADGRG5 DOK4 GC16P057566
GH16H056997 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11 +537.2 537232 4 BCOR HDGF PKNOX1 KLF1 RB1 ZMYM3 EBF1 RELA FOSL1 POLR2A CETP NLRC5 CCDC102A GC16M057013
GH16H057688 1.6 Ensembl ENCODE dbSUPER 11 -152.5 -152548 2.1 HNRNPUL1 HDGF PKNOX1 ARNT ZNF766 CBX5 REST ZNF592 MEF2D SMARCA4 DRC7 CNOT1 ENSG00000260467 CCDC102A RSPRY1 ADGRG3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CCDC102A on UCSC Golden Path with GeneCards custom track

Promoters for CCDC102A Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000086450 730 1601 HDGF PKNOX1 ZFP64 ARID4B GLIS2 ZNF143 ZNF207 KLF7 FOS RUNX3

Genomic Locations for CCDC102A Gene

Genomic Locations for CCDC102A Gene
24,953 bases
Minus strand

Genomic View for CCDC102A Gene

Genes around CCDC102A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCDC102A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCDC102A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCDC102A Gene

Proteins for CCDC102A Gene

  • Protein details for CCDC102A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Coiled-coil domain-containing protein 102A
    Protein Accession:
    Secondary Accessions:
    • Q9BT74

    Protein attributes for CCDC102A Gene

    550 amino acids
    Molecular mass:
    62596 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CCDC102A Gene

Post-translational modifications for CCDC102A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CCDC102A Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CCDC102A Gene

Domains & Families for CCDC102A Gene

Gene Families for CCDC102A Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CCDC102A Gene


Suggested Antigen Peptide Sequences for CCDC102A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCDC102A: view

No data available for UniProtKB/Swiss-Prot for CCDC102A Gene

Function for CCDC102A Gene

Phenotypes From GWAS Catalog for CCDC102A Gene

Gene Ontology (GO) - Molecular Function for CCDC102A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003774 motor activity IEA --
genes like me logo Genes that share ontologies with CCDC102A: view

Phenotypes for CCDC102A Gene

genes like me logo Genes that share phenotypes with CCDC102A: view

Animal Model Products

miRNA for CCDC102A Gene

miRTarBase miRNAs that target CCDC102A

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CCDC102A Gene

Localization for CCDC102A Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CCDC102A gene
Compartment Confidence
nucleus 4
cytoskeleton 2
mitochondrion 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear bodies (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CCDC102A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016459 myosin complex IEA --
genes like me logo Genes that share ontologies with CCDC102A: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CCDC102A Gene

Pathways & Interactions for CCDC102A Gene

SuperPathways for CCDC102A Gene

No Data Available

Gene Ontology (GO) - Biological Process for CCDC102A Gene


No data available for Pathways by source and SIGNOR curated interactions for CCDC102A Gene

Drugs & Compounds for CCDC102A Gene

No Compound Related Data Available

Transcripts for CCDC102A Gene

mRNA/cDNA for CCDC102A Gene

Unigene Clusters for CCDC102A Gene

Coiled-coil domain containing 102A:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CCDC102A Gene

No ASD Table

Relevant External Links for CCDC102A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCDC102A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CCDC102A Gene

Protein differential expression in normal tissues from HIPED for CCDC102A Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (32.0) and Heart (24.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for CCDC102A Gene

NURSA nuclear receptor signaling pathways regulating expression of CCDC102A Gene:


SOURCE GeneReport for Unigene cluster for CCDC102A Gene:


Evidence on tissue expression from TISSUES for CCDC102A Gene

  • Nervous system(4.2)
  • Liver(4.1)
genes like me logo Genes that share expression patterns with CCDC102A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCDC102A Gene

Orthologs for CCDC102A Gene

This gene was present in the common ancestor of animals.

Orthologs for CCDC102A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CCDC102A 34
  • 99 (a)
(Bos Taurus)
Mammalia CCDC102A 33 34
  • 91.14 (n)
(Canis familiaris)
Mammalia CCDC102A 33 34
  • 88.91 (n)
(Rattus norvegicus)
Mammalia Ccdc102a 33
  • 86.58 (n)
(Mus musculus)
Mammalia Ccdc102a 33 16 34
  • 86.04 (n)
(Monodelphis domestica)
Mammalia CCDC102A 34
  • 64 (a)
(Gallus gallus)
Aves CCDC102A 33 34
  • 78.27 (n)
(Anolis carolinensis)
Reptilia CCDC102A 34
  • 88 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc102a 33
  • 64.16 (n)
(Danio rerio)
Actinopterygii ccdc102a 33 34
  • 68.7 (n)
wufc66e01 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007348 33
  • 56.09 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG31638 34 33
  • 55.36 (n)
Species where no ortholog for CCDC102A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CCDC102A Gene

Gene Tree for CCDC102A (if available)
Gene Tree for CCDC102A (if available)

Paralogs for CCDC102A Gene

Paralogs for CCDC102A Gene

(2) SIMAP similar genes for CCDC102A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with CCDC102A: view

Variants for CCDC102A Gene

Sequence variations from dbSNP and Humsavar for CCDC102A Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000067157 -- 57,514,265(+) GATCA(C/T)AGCTC intron-variant
rs1000413130 -- 57,517,312(+) TACCA(A/G)TTAAC intron-variant
rs1000418529 -- 57,513,993(+) GGCCA(C/T)GGAAA intron-variant
rs1000512748 -- 57,523,467(+) AAGGC(A/G)TTATA intron-variant
rs1000566574 -- 57,523,145(+) CCTGG(G/T)CAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CCDC102A Gene

Variant ID Type Subtype PubMed ID
nsv952683 CNV deletion 24416366
nsv833245 CNV loss 17160897
nsv572723 CNV loss 21841781
nsv1055537 CNV loss 25217958
esv28778 CNV loss 19812545

Variation tolerance for CCDC102A Gene

Residual Variation Intolerance Score: 41.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.57; 30.31% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CCDC102A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CCDC102A Gene

Disorders for CCDC102A Gene

Relevant External Links for CCDC102A

Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCDC102A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCDC102A Gene

Publications for CCDC102A Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 60

Products for CCDC102A Gene

Sources for CCDC102A Gene

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