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Aliases for CCAT2 Gene

Subcategory (RNA class) for CCAT2 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CCAT2 Gene

  • Colon Cancer Associated Transcript 2 (Non-Protein Coding) 2 3 5
  • Non-Coding RNA Involved In Cancer Predisposition 1 2 3
  • Long Intergenic Non-Protein Coding RNA 873 2 3
  • LINC00873 3
  • NCCP1 3

External Ids for CCAT2 Gene

Previous GeneCards Identifiers for CCAT2 Gene

  • GC08U901766

Summaries for CCAT2 Gene

GeneCards Summary for CCAT2 Gene

CCAT2 (Colon Cancer Associated Transcript 2 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCAT2 Gene

Genomics for CCAT2 Gene

Regulatory Elements for CCAT2 Gene

Enhancers for CCAT2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around CCAT2 on UCSC Golden Path with GeneCards custom track

Genomic Location for CCAT2 Gene

127,400,399 bp from pter
127,402,150 bp from pter
1,752 bases
Plus strand

Genomic View for CCAT2 Gene

Genes around CCAT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CCAT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CCAT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CCAT2 Gene

Proteins for CCAT2 Gene

Post-translational modifications for CCAT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CCAT2 Gene

Domains & Families for CCAT2 Gene

Gene Families for CCAT2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CCAT2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCAT2 Gene

Function for CCAT2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCAT2 Gene

Localization for CCAT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCAT2 Gene

Pathways & Interactions for CCAT2 Gene

SuperPathways for CCAT2 Gene

No Data Available

Interacting Proteins for CCAT2 Gene

Gene Ontology (GO) - Biological Process for CCAT2 Gene


No data available for Pathways by source and SIGNOR curated interactions for CCAT2 Gene

Drugs & Compounds for CCAT2 Gene

No Compound Related Data Available

Transcripts for CCAT2 Gene

mRNA/cDNA for CCAT2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CCAT2 Gene

No ASD Table

Relevant External Links for CCAT2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CCAT2 Gene

NURSA nuclear receptor signaling pathways regulating expression of CCAT2 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CCAT2 Gene

Orthologs for CCAT2 Gene

Evolution for CCAT2 Gene

Gene Tree for CCAT2 (if available)
Gene Tree for CCAT2 (if available)

No data available for Orthologs for CCAT2 Gene

Paralogs for CCAT2 Gene

No data available for Paralogs for CCAT2 Gene

Variants for CCAT2 Gene

Structural Variations from Database of Genomic Variants (DGV) for CCAT2 Gene

Variant ID Type Subtype PubMed ID
nsv499795 OTHER inversion 21111241
nsv7419 OTHER inversion 18451855

Relevant External Links for CCAT2 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for CCAT2 Gene

Disorders for CCAT2 Gene

Relevant External Links for CCAT2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CCAT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCAT2 Gene

Publications for CCAT2 Gene

  1. CCAT2 is a lung adenocarcinoma-specific long non-coding RNA and promotes invasion of non-small cell lung cancer. (PMID: 24504682) Qiu M. … Yin R. (Tumour Biol. 2014) 2 3 65
  2. CCAT2, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer. (PMID: 23796952) Ling H. … Calin G.A. (Genome Res. 2013) 2 3 65
  3. Allele-Specific Reprogramming of Cancer Metabolism by the Long Non-coding RNA CCAT2. (PMID: 26853146) Redis R.S. … Calin G.A. (Mol. Cell 2016) 3 65
  4. Long noncoding RNA CCAT2 correlates with smoking in esophageal squamous cell carcinoma. (PMID: 25677908) Wang J. … Xu L. (Tumour Biol. 2015) 3 65
  5. Long non-coding RNA CCAT2 is up-regulated in gastric cancer and associated with poor prognosis. (PMID: 25755774) Wang C.Y. … Hu J.H. (Int J Clin Exp Pathol 2015) 3 65

Products for CCAT2 Gene

Sources for CCAT2 Gene

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