Aliases for CCAT1 Gene
Subcategory (RNA class) for CCAT1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
Aliases for CCAT1 Gene
External Ids for CCAT1 Gene
- HGNC: 45128
- Entrez Gene: 100507056
- Ensembl: ENSG00000247844
Previous GeneCards Identifiers for CCAT1 Gene
- GC08M128221
Summaries for CCAT1 Gene
GeneCards Summary for CCAT1 Gene
CCAT1 (Colon Cancer Associated Transcript 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CCAT1 Gene
Genomics for CCAT1 Gene
Regulatory Elements for CCAT1 Gene
Enhancers for CCAT1 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH08G126318 | 0.8 | Ensembl | 4.7 | +900.4 | 900368 | 0.2 | LEF1 CREB3L1 NFRKB CEBPG ZBTB40 E2F1 POLR2A NCOR1 TRIM24 L3MBTL2 | CCAT1 LOC101927657 RFPL4AP5 |
| GH08G127204 | 2 | FANTOM5 Ensembl ENCODE dbSUPER | 0.7 | +2.6 | 2612 | 24.9 | HDGF FOXA2 PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 YBX1 ZBTB7B | CCAT1 CASC19 |
| GH08G127241 | 0.9 | FANTOM5 dbSUPER | 0.3 | -21.9 | -21943 | 0.2 | HDGF ZNF687 NFIB HLF SIN3A DPF2 ZNF592 NONO CTBP1 FOXK2 | CASC21 CCAT1 |
| GH08G127233 | 0.6 | dbSUPER | 0.4 | -15.6 | -15577 | 2.0 | MTA2 CHD1 JUNB ATF2 ZKSCAN1 ARID3A FOXK2 MLLT1 | CASC21 CCAT1 |
| GH08G127239 | 0.8 | dbSUPER | 0.3 | -20.5 | -20497 | 1.4 | PKNOX1 JUN MAX ZBTB7B FOSL1 ZFHX2 EGR1 FOSL2 FOS IKZF2 | CASC21 CCAT1 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CCAT1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for CCAT1 Gene
- Chromosome:
- 8
- Start:
- 127,207,382 bp from pter
- End:
- 127,219,268 bp from pter
- Size:
- 11,887 bases
- Orientation:
- Minus strand
Genomic View for CCAT1 Gene
Genes around CCAT1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 8q24.21 by Ensembl
- 8q24.21 by Entrez Gene
- 8q24.21 by HGNC
CCAT1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CCAT1 Gene
Proteins for CCAT1 Gene
Post-translational modifications for CCAT1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for CCAT1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCAT1
- Origene Custom Protein Services for CCAT1
- Search GeneTex for Proteins for CCAT1
Assay Products
No data available for DME Specific Peptides for CCAT1 Gene
Domains & Families for CCAT1 Gene
Gene Families for CCAT1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CCAT1 Gene
Function for CCAT1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCAT1
-
- Search ViGene Biosciences for CCAT1
CRISPR Products
- Browse CRISPR knockouts for CCAT1
miRNA Products
- Search ViGene Biosciences for CCAT1
Inhibitory RNA Products
- Search ViGene Biosciences for CCAT1
Clone Products
- GenScript: Custom all cDNA clones Services for CCAT1
- VectorBuilder custom plasmid, inducible vectors for CCAT1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCAT1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
- Search ViGene Biosciences for CCAT1
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CCAT1 Gene
Localization for CCAT1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CCAT1 Gene
Transcripts for CCAT1 Gene
mRNA/cDNA for CCAT1 Gene
- (7) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CCAT1 Gene
CRISPR Products
- Browse CRISPR knockouts for CCAT1
miRNA Products
- Search ViGene Biosciences for CCAT1
Inhibitory RNA Products
- Search ViGene Biosciences for CCAT1
Clone Products
- GenScript: Custom all cDNA clones Services for CCAT1
- VectorBuilder custom plasmid, inducible vectors for CCAT1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCAT1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CCAT1 Gene
mRNA differential expression in normal tissues according to GTEx for CCAT1 Gene
This gene is overexpressed in Esophagus - Mucosa (x23.4) and Liver (x18.0).
NURSA nuclear receptor signaling pathways regulating expression of CCAT1 Gene:
CCAT1SOURCE GeneReport for Unigene cluster for CCAT1 Gene:
Hs.343864Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CCAT1 Gene
Orthologs for CCAT1 Gene
No data available for Orthologs for CCAT1 Gene
Paralogs for CCAT1 Gene
No data available for Paralogs for CCAT1 Gene
Variants for CCAT1 Gene
| SNP ID | Clin | Chr 08 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000111217 | -- | 127,215,519(+) | ATAAG(G/T)GTGCC | intron-variant | |
| rs1000203645 | -- | 127,207,197(+) | CCCAG(C/G)ACAGT | downstream-variant-500B | |
| rs1000575419 | -- | 127,207,460(+) | TACAC(A/G)GTAGA | nc-transcript-variant | |
| rs1000694899 | -- | 127,209,582(+) | GAAGA(C/T)GGATG | nc-transcript-variant | |
| rs1000962611 | -- | 127,214,662(+) | ACCTC(C/T)AACAC | intron-variant |
Relevant External Links for CCAT1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CCAT1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CCAT1 Gene
Disorders for CCAT1 Gene
Relevant External Links for CCAT1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- CCAT1
No disorders were found for CCAT1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CCAT1 Gene
Publications for CCAT1 Gene
- Long-range interaction and correlation between MYC enhancer and oncogenic long noncoding RNA CARLo-5. (PMID: 24594601) Kim T. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 2014) 2 3 64
- Long noncoding RNA CCAT1, which could be activated by c-Myc, promotes the progression of gastric carcinoma. (PMID: 23143645) Yang F. … Fang G. (J. Cancer Res. Clin. Oncol. 2013) 2 3 64
- Detection of a long non-coding RNA (CCAT1) in living cells and human adenocarcinoma of colon tissues using FIT-PNA molecular beacons. (PMID: 23416875) Kam Y. … Yavin E. (Cancer Lett. 2013) 2 3 64
- Colon cancer associated transcript-1: a novel RNA expressed in malignant and pre-malignant human tissues. (PMID: 21547902) Nissan A. … Gure A.O. (Int. J. Cancer 2012) 2 3 64
- CCAT1: an oncogenic long noncoding RNA in human cancers. (PMID: 27638771) Guo X. … Hua Y. (J. Cancer Res. Clin. Oncol. 2017) 3 64
Products for CCAT1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
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- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CCAT1
- Origene Custom Protein Services for CCAT1
- Browse OriGene Inhibitory RNA Products For CCAT1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CCAT1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CCAT1
- GenScript: Custom all cDNA clones Services for CCAT1
- GenScript Custom Purified and Recombinant Proteins Services for CCAT1
- GenScript Custom Assay Services for CCAT1
- GenScript Custom overexpressing Cell Line Services for CCAT1
- Browse GenScript CRISPR for CCAT1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for CCAT1
- Browse Sino Biological cDNA Clones
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- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search ViGene Biosciences for CCAT1
- Cyagen custom Knockout/knockin (KOKI) mouse models for CCAT1
- VectorBuilder custom plasmid, inducible vectors for CCAT1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CCAT1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CCAT1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer