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Aliases for CC2D2B Gene

Aliases for CC2D2B Gene

  • Coiled-Coil And C2 Domain Containing 2B 2 3
  • C10orf130 3 4
  • Chromosome 10 Open Reading Frame 130 2
  • Protein CC2D2B 3
  • BA248J23.4 3

External Ids for CC2D2B Gene

Previous Symbols for CC2D2B Gene

  • C10orf130

Summaries for CC2D2B Gene

GeneCards Summary for CC2D2B Gene

CC2D2B (Coiled-Coil And C2 Domain Containing 2B) is a Protein Coding gene. Diseases associated with CC2D2B include alcohol dependence and alzheimer disease. An important paralog of this gene is C10orf131.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CC2D2B Gene

Genomics for CC2D2B Gene

Genomic Location for CC2D2B Gene

Start:
95,938,103 bp from pter
End:
96,033,739 bp from pter
Size:
95,637 bases
Orientation:
Plus strand

Genomic View for CC2D2B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CC2D2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CC2D2B Gene

Regulatory Elements for CC2D2B Gene

Proteins for CC2D2B Gene

  • Protein details for CC2D2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6DHV5-C2D2B_HUMAN
    Recommended name:
    Protein CC2D2B
    Protein Accession:
    Q6DHV5
    Secondary Accessions:
    • A2A3E9
    • B4DYD4
    • E9PCC3
    • Q5VUS0

    Protein attributes for CC2D2B Gene

    Size:
    322 amino acids
    Molecular mass:
    37073 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CC2D2B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CC2D2B Gene

Proteomics data for CC2D2B Gene at MOPED

Post-translational modifications for CC2D2B Gene

No Post-translational modifications

Other Protein References for CC2D2B Gene

No data available for DME Specific Peptides for CC2D2B Gene

Domains for CC2D2B Gene

Protein Domains for CC2D2B Gene

ProtoNet:
genes like me logo Genes that share domains with CC2D2B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CC2D2B Gene

Function for CC2D2B Gene

miRNA for CC2D2B Gene

miRTarBase miRNAs that target CC2D2B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CC2D2B Gene

Localization for CC2D2B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CC2D2B Gene COMPARTMENTS Subcellular localization image for CC2D2B gene
Compartment Confidence
cytosol 2
nucleus 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for CC2D2B Gene

Pathways for CC2D2B Gene

SuperPathways for CC2D2B Gene

No Data Available

Interacting Proteins for CC2D2B Gene

Gene Ontology (GO) - Biological Process for CC2D2B Gene

None

No data available for Pathways by source for CC2D2B Gene

Transcripts for CC2D2B Gene

mRNA/cDNA for CC2D2B Gene

(9) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CC2D2B Gene

Coiled-coil and C2 domain containing 2B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CC2D2B Gene

No ASD Table

Relevant External Links for CC2D2B Gene

GeneLoc Exon Structure for
CC2D2B
ECgene alternative splicing isoforms for
CC2D2B

Expression for CC2D2B Gene

mRNA expression in normal human tissues for CC2D2B Gene

mRNA differential expression in normal tissues according to GTEx for CC2D2B Gene

This gene is overexpressed in Testis (9.0).

SOURCE GeneReport for Unigene cluster for CC2D2B Gene Hs.652240

genes like me logo Genes that share expressions with CC2D2B: view

Orthologs for CC2D2B Gene

This gene was present in the common ancestor of animals.

Orthologs for CC2D2B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 99 (a)
OneToMany
CC2D2B 36
  • 99.75 (n)
  • 99.25 (a)
dog
(Canis familiaris)
Mammalia CC2D2B 36
  • 89.03 (n)
  • 84.04 (a)
mouse
(Mus musculus)
Mammalia Cc2d2b 16
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 13 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 15 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG43370 37
  • 6 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea mks-6 37
  • 7 (a)
OneToMany
Species with no ortholog for CC2D2B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for CC2D2B Gene

ENSEMBL:
Gene Tree for CC2D2B (if available)
TreeFam:
Gene Tree for CC2D2B (if available)

Paralogs for CC2D2B Gene

Paralogs for CC2D2B Gene

Selected SIMAP similar genes for CC2D2B Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for CC2D2B Gene

genes like me logo Genes that share paralogs with CC2D2B: view

Variants for CC2D2B Gene

Sequence variations from dbSNP and Humsavar for CC2D2B Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
VAR_050697 -
VAR_050698 -
VAR_050699 -

Relevant External Links for CC2D2B Gene

HapMap Linkage Disequilibrium report
CC2D2B

No data available for Structural Variations from Database of Genomic Variants (DGV) for CC2D2B Gene

Disorders for CC2D2B Gene

(2) University of Copenhagen DISEASES for CC2D2B Gene

Relevant External Links for CC2D2B

Genetic Association Database (GAD)
CC2D2B
Human Genome Epidemiology (HuGE) Navigator
CC2D2B
genes like me logo Genes that share disorders with CC2D2B: view

No data available for UniProtKB/Swiss-Prot for CC2D2B Gene

Publications for CC2D2B Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 49
  5. A genome-wide association study of alcohol dependence. (PMID: 20202923) Bierut L.J. … Rice J.P. (Proc. Natl. Acad. Sci. U.S.A. 2010) 49

Products for CC2D2B Gene

  • antibodies-online proteins for CC2D2B
  • antibodies-online antibodies for CC2D2B
  • antibodies-online kits for CC2D2B

Sources for CC2D2B Gene

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